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The Oxytricha trifallax Macronuclear Genome: A Complex Eukaryotic Genome with 16,000 Tiny Chromosomes
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/dvg.1020130206openalex-snapshot
Rate of phenotypic assortment in Tetrahymena thermophila
inferredcites →https://doi.org/10.1002/jez.1400290305openalex-snapshot
An experimental study of an amicronucleate Oxytricha. I. Study of the normal animal, with an account of cannibalism
inferredcites →https://doi.org/10.1002/pmic.200300776openalex-snapshot
Predotar: A tool for rapidly screening proteomes for N ‐terminal targeting sequences
inferredcites →https://doi.org/10.1007/978-3-642-12683-3_28openalex-snapshot
IDBA – A Practical Iterative de Bruijn Graph De Novo Assembler
inferredcites →https://doi.org/10.1007/bf00283386openalex-snapshot
The development of the macronucleus in the ciliated protozoan Stylonychia mytilus
inferredcites →https://doi.org/10.1007/bf00285634openalex-snapshot
Morphology and development of the macronuclei of the ciliates Stylonychia mytilus and Euplotes aediculatus
inferredcites →https://doi.org/10.1007/bf00286789openalex-snapshot
Characterization of macronuclear DNA in five species of ciliates
inferredcites →https://doi.org/10.1007/bf00286790openalex-snapshot
RNA and Macronuclear transcription in the ciliate Stylonychia mytilus
inferredcites →https://doi.org/10.1007/bf00293312openalex-snapshot
Structural aspects of amitosis: a light and electron microscope study of the isolated macronuclei of Paramecium aurelia and Tetrahymena pyriformis
inferredcites →https://doi.org/10.1007/bf00329545openalex-snapshot
Arrangement of coding and non-coding sequences in the DNA molecules coding for rRNAs in Oxytricha sp.
inferredcites →https://doi.org/10.1007/bf00329546openalex-snapshot
Gene-sized DNA molecules of the macronuclei in three species of hypotrichs: Size distributions and absence of nicks
inferredcites →https://doi.org/10.1007/bf02509498openalex-snapshot
Timing of differential amplification of macronucleus-destined sequences during macronuclear development in the hypotrichous ciliate Euplotes crassus
inferredcites →https://doi.org/10.1007/s00239-008-9178-1openalex-snapshot
Analysis of the DDE Motif in the Mutator Superfamily
inferredcites →https://doi.org/10.1007/s00412-004-0295-3openalex-snapshot
Coding properties of Oxytricha trifallax (Sterkiella histriomuscorum) macronuclear chromosomes: analysis of a pilot genome project
inferredcites →https://doi.org/10.1007/s004120100154openalex-snapshot
Minichromosomal DNA replication in the macronucleus of the hypotrichous ciliate Stylonychia lemnae is independent of chromosome-internal sequences
inferredcites →https://doi.org/10.1016/0022-2836(92)90393-xopenalex-snapshot
A high degree of macronuclear chromosome polymorphism is generated by variable DNA rearrangements in Paramecium primaurelia during macronuclear differentiation
inferredcites →https://doi.org/10.1016/0092-8674(76)90256-7openalex-snapshot
DNA of ciliated protozoa: DNA sequence diminution during macronuclear development of oxytricha
inferredcites →https://doi.org/10.1016/0092-8674(81)90015-5openalex-snapshot
Feedback control of mitosis in budding yeast
inferredcites →https://doi.org/10.1016/0092-8674(84)90086-2openalex-snapshot
Telomeric properties of C4A4-homologous sequences in micronuclear DNA of Oxytricha fallax
inferredcites →https://doi.org/10.1016/0092-8674(85)90249-1openalex-snapshot
Mobile elements bounded by C4A4 telomeric repeats in oxytricha fallax
inferredcites →https://doi.org/10.1016/0092-8674(86)90442-3openalex-snapshot
Telomere proteins: Specific recognition and protection of the natural termini of Oxytricha macronuclear DNA
inferredcites →https://doi.org/10.1016/0092-8674(86)90445-9openalex-snapshot
Control of rDNA replication in Tetrahymena involves a cis-acting upstream repeat of a promoter element
inferredcites →https://doi.org/10.1016/0378-1119(91)90033-8openalex-snapshot
Overamplification of macronuclear linear DNA molecules during prolonged vegetative growth of Oxytricha nova
inferredcites →https://doi.org/10.1016/b978-0-12-385967-9.00004-9openalex-snapshot
Whole Genome Studies of Tetrahymena
inferredcites →https://doi.org/10.1016/j.cell.2006.04.044openalex-snapshot
Recent Expansion of the Telomeric Complex in Rodents: Two Distinct POT1 Proteins Protect Mouse Telomeres
inferredcites →https://doi.org/10.1016/j.cub.2005.07.033openalex-snapshot
Nowa1p and Nowa2p: Novel Putative RNA Binding Proteins Involved in trans-Nuclear Crosstalk in Paramecium tetraurelia
inferredcites →https://doi.org/10.1016/j.gene.2012.05.045openalex-snapshot
Copy number variations of 11 macronuclear chromosomes and their gene expression in Oxytricha trifallax
inferredcites →https://doi.org/10.1016/j.meegid.2005.02.004openalex-snapshot
Molecular epidemiology of clonal diploids: A quick overview and a short DIY (do it yourself) notice
inferredcites →https://doi.org/10.1016/j.protis.2011.12.006openalex-snapshot
Characterization and Taxonomic Validity of the Ciliate Oxytricha trifallax (Class Spirotrichea) Based on Multiple Gene Sequences: Limitations in Identifying Genera Solely by Morphology
inferredcites →https://doi.org/10.1016/s0079-6603(08)61001-6openalex-snapshot
Developmental Genome Reorganization in Ciliated Protozoa: The Transposon Link
inferredcites →https://doi.org/10.1023/a:1014957303627openalex-snapshot
Topological organization of DNA molecules in the macronucleus of hypotrichous ciliated protozoa
inferredcites →https://doi.org/10.1023/a:1021065512933openalex-snapshot
Organization of the macronuclear gene-sized pieces of stichotrichous ciliates into a higher order structure via telomere–matrix interactions
inferredcites →https://doi.org/10.1038/295430a0openalex-snapshot
Nucleotide sequence of a macronuclear gene for actin in Oxytricha fallax
inferredcites →https://doi.org/10.1038/nature01097openalex-snapshot
Genome sequence of the human malaria parasite Plasmodium falciparum
inferredcites →https://doi.org/10.1038/nature05230openalex-snapshot
Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia
inferredcites →https://doi.org/10.1038/nature05469openalex-snapshot
TPP1 is a homologue of ciliate TEBP-β and interacts with POT1 to recruit telomerase
inferredcites →https://doi.org/10.1038/nature06452openalex-snapshot
RNA-mediated epigenetic programming of a genome-rearrangement pathway
inferredcites →https://doi.org/10.1046/j.1365-313x.2003.01741.xopenalex-snapshot
The FHY3 and FAR1 genes encode transposase‐related proteins involved in regulation of gene expression by the phytochrome A‐signaling pathway
inferredcites →https://doi.org/10.1073/pnas.0700890104openalex-snapshot
Extreme genomic variation in a natural population
inferredcites →https://doi.org/10.1073/pnas.1009284107openalex-snapshot
RNA-dependent control of gene amplification
inferredcites →https://doi.org/10.1073/pnas.1012236107openalex-snapshot
RNA-mediated epigenetic regulation of DNA copy number
inferredcites →https://doi.org/10.1073/pnas.1110633108openalex-snapshot
Estimating the timing of early eukaryotic diversification with multigene molecular clocks
inferredcites →https://doi.org/10.1073/pnas.86.16.6264openalex-snapshot
Reordering of nine exons is necessary to form a functional actin gene in Oxytricha nova.
inferredcites →https://doi.org/10.1073/pnas.91.3.942openalex-snapshot
A proposed superfamily of transposase genes: transposon-like elements in ciliated protozoa and a common "D35E" motif.
inferredcites →https://doi.org/10.1073/pnas.92.9.3888openalex-snapshot
Scrambling of the actin I gene in two Oxytricha species.
inferredcites →https://doi.org/10.1073/pnas.93.24.13760openalex-snapshot
The Saccharomyces CDC 13 protein is a single-strand TG 1–3 telomeric DNA-binding protein in vitro that affects telomere behavior in vivo
inferredcites →https://doi.org/10.1078/1434461000163openalex-snapshot
Modeling Senescence in Hypotrichous Ciliates
inferredcites →https://doi.org/10.1078/143446104774199628openalex-snapshot
A Micronuclear Locus Containing Three Protein-Coding Genes Remains Linked During Macronuclear Development in the Spirotrichous Ciliate Holosticha
inferredcites →https://doi.org/10.1080/10635150390235520openalex-snapshot
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
inferredcites →https://doi.org/10.1086/282022openalex-snapshot
An Analysis of Nuclear Differentiation in the Selfers of Tetrahymena
inferredcites →https://doi.org/10.1086/282023openalex-snapshot
Appendix Model of Subnuclear Segregation in the Macronucleus of Ciliates
inferredcites →https://doi.org/10.1091/mbc.e09-12-1079openalex-snapshot
A Domesticated piggyBac Transposase Plays Key Roles in Heterochromatin Dynamics and DNA Cleavage during Programmed DNA Deletion in Tetrahymena thermophila
inferredcites →https://doi.org/10.1091/mbc.e11-06-0551openalex-snapshot
The Pot1a-associated proteins Tpt1 and Pat1 coordinate telomere protection and length regulation inTetrahymena
inferredcites →https://doi.org/10.1093/bib/bbn013openalex-snapshot
Recent developments in the MAFFT multiple sequence alignment program
inferredcites →https://doi.org/10.1093/bioinformatics/btg1080openalex-snapshot
Gene prediction with a hidden Markov model and a new intron submodel
inferredcites →https://doi.org/10.1093/bioinformatics/btl629openalex-snapshot
Assembling millions of short DNA sequences using SSAKE
inferredcites →https://doi.org/10.1093/bioinformatics/btn013openalex-snapshot
Using native and syntenically mapped cDNA alignments to improve de novo gene finding
inferredcites →https://doi.org/10.1093/bioinformatics/btp348openalex-snapshot
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
inferredcites →https://doi.org/10.1093/bioinformatics/btp373openalex-snapshot
VarScan: variant detection in massively parallel sequencing of individual and pooled samples
inferredcites →https://doi.org/10.1093/bioinformatics/btp579openalex-snapshot
Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data
inferredcites →https://doi.org/10.1093/bioinformatics/btq461openalex-snapshot
Search and clustering orders of magnitude faster than BLAST
inferredcites →https://doi.org/10.1093/bioinformatics/btq626openalex-snapshot
PE-Assembler: de novo assembler using short paired-end reads
inferredcites →https://doi.org/10.1093/bioinformatics/btr046openalex-snapshot
SHRiMP2: Sensitive yet Practical Short Read Mapping
inferredcites →https://doi.org/10.1093/gbe/evr136openalex-snapshot
The Oxytricha trifallax Mitochondrial Genome
inferredcites →https://doi.org/10.1093/genetics/164.4.1635openalex-snapshot
The Population Genetics of Clonal and Partially Clonal Diploids
inferredcites →https://doi.org/10.1093/molbev/msj067openalex-snapshot
Patterns of Protein Evolution in Tetrahymena thermophila: Implications for Estimates of Effective Population Size
inferredcites →https://doi.org/10.1093/molbev/msl128openalex-snapshot
Large Global Effective Population Sizes in Paramecium
inferredcites →https://doi.org/10.1093/molbev/msn266openalex-snapshot
Genetic Diversity in the Paramecium aurelia Species Complex
inferredcites →https://doi.org/10.1093/nar/16.1.251openalex-snapshot
Alternative use of chromosome fragmentation sites in the ciliated protozoanOxytricha nova
inferredcites →https://doi.org/10.1093/nar/20.24.6621openalex-snapshot
Euplotes crassushas genes encoding telomere-binding proteins and telomere-binding protein homologs
inferredcites →https://doi.org/10.1093/nar/23.8.1279openalex-snapshot
Macronuclear gene-sized molecules of hypotrichs
inferredcites →https://doi.org/10.1093/nar/25.14.2877openalex-snapshot
The telomere binding protein of Euplotes crassus prevents non-specific transcription initiation but has no role in positioning transcription initiation complexes
inferredcites →https://doi.org/10.1093/nar/27.1.29openalex-snapshot
KEGG: Kyoto Encyclopedia of Genes and Genomes
inferredcites →https://doi.org/10.1093/nar/28.1.27openalex-snapshot
KEGG: Kyoto Encyclopedia of Genes and Genomes
inferredcites →https://doi.org/10.1093/nar/28.23.4679openalex-snapshot
A unique pattern of intrastrand anomalies in base composition of the DNA in hypotrichs
inferredcites →https://doi.org/10.1093/nar/5.12.4699openalex-snapshot
Chromatin structure in the macronucleus of the ciliate Stylonychia mytilus
inferredcites →https://doi.org/10.1093/nar/gkj054openalex-snapshot
Tetrahymena Genome Database (TGD): a new genomic resource for Tetrahymena thermophila research
inferredcites →https://doi.org/10.1093/nar/gkn772openalex-snapshot
tRNAdb 2009: compilation of tRNA sequences and tRNA genes
inferredcites →https://doi.org/10.1093/nar/gkn916openalex-snapshot
Assessing the gene space in draft genomes
inferredcites →https://doi.org/10.1093/nar/gkp785openalex-snapshot
POT1 proteins in green algae and land plants: DNA-binding properties and evidence of co-evolution with telomeric DNA
inferredcites →https://doi.org/10.1093/nar/gkq918openalex-snapshot
ParameciumDB in 2011: new tools and new data for functional and comparative genomics of the model ciliate Paramecium tetraurelia
inferredcites →https://doi.org/10.1093/nar/gkr501openalex-snapshot
Exploiting Oxytricha trifallax nanochromosomes to screen for non-coding RNA genes
inferredcites →https://doi.org/10.1093/nar/gkr988openalex-snapshot
KEGG for integration and interpretation of large-scale molecular data sets
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003921openalex-snapshot
Widespread Distribution of Extensive Chromosomal Fragmentation in Ciliates
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025581openalex-snapshot
Internal eliminated sequences interrupting the Oxytricha 81 locus: allelic divergence, conservation, conversions, and possible transposon origins
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040335openalex-snapshot
Codon usage and tRNA content in unicellular and multicellular organisms.
inferredcites →https://doi.org/10.1099/ijs.0.02328-0openalex-snapshot
Multiple protein phylogenies show that Oxyrrhis marina and Perkinsus marinus are early branches of the dinoflagellate lineage
inferredcites →https://doi.org/10.1101/gad.1.10.1047openalex-snapshot
Alternative processing during development of a macronuclear chromosome family in Oxytricha fallax.
inferredcites →https://doi.org/10.1101/gad.1.8.783openalex-snapshot
Telomeric DNA-protein interactions of Oxytricha macronuclear DNA.
inferredcites →https://doi.org/10.1101/gad.547309openalex-snapshot
PiggyMac, a domesticated piggyBac transposase involved in programmed genome rearrangements in the ciliate Paramecium tetraurelia
inferredcites →https://doi.org/10.1101/gad.7.5.870openalex-snapshot
Oxytricha telomere-binding protein: separable DNA-binding and dimerization domains of the alpha-subunit.
inferredcites →https://doi.org/10.1101/gad.8.1.84openalex-snapshot
A weak germ-line excision mutation blocks developmentally controlled amplification of the rDNA minichromosome of Tetrahymena thermophila.
inferredcites →https://doi.org/10.1101/gr.074534.107openalex-snapshot
Analysis of sequence variability in the macronuclear DNA of Paramecium tetraurelia: A somatic view of the germline
inferredcites →https://doi.org/10.1101/gr.089532.108openalex-snapshot
ABySS: A parallel assembler for short read sequence data
inferredcites →https://doi.org/10.1101/gr.101360.109openalex-snapshot
Assembly of large genomes using second-generation sequencing
inferredcites →https://doi.org/10.1101/gr.1390403openalex-snapshot
PCAP: A Whole-Genome Assembly Program
inferredcites →https://doi.org/10.1101/gr.171401openalex-snapshot
Automated Finishing with Autofinish
inferredcites →https://doi.org/10.1101/gr.229202openalex-snapshot
BLAT —The BLAST -Like Alignment Tool
inferredcites →https://doi.org/10.1101/gr.8.3.175openalex-snapshot
Base-Calling of Automated Sequencer Traces Using Phred. I. Accuracy Assessment
inferredcites →https://doi.org/10.1101/gr.8.3.195openalex-snapshot
Consed: A Graphical Tool for Sequence Finishing
inferredcites →https://doi.org/10.1101/gr.849004openalex-snapshot
WebLogo: A Sequence Logo Generator: Figure 1
inferredcites →https://doi.org/10.1101/gr.9.9.868openalex-snapshot
CAP3: A DNA Sequence Assembly Program
inferredcites →https://doi.org/10.1111/j.1432-1033.1996.00779.xopenalex-snapshot
Computational Method to Predict Mitochondrially Imported Proteins and their Targeting Sequences
inferredcites →https://doi.org/10.1111/j.1550-7408.1986.tb05551.xopenalex-snapshot
Alternative Processing of Sequences During Macronuclear Development in Tetrahymena thermophila1
inferredcites →https://doi.org/10.1111/j.1550-7408.1987.tb03207.xopenalex-snapshot
Multiple Sequence Versions of the Oxytricha fallax 81‐MAC Alternate Processing Family1
inferredcites →https://doi.org/10.1111/j.1550-7408.1994.tb01507.xopenalex-snapshot
Accumulation of Telomerase RNA and Telomere Protein Transcripts during Telomere Synthesis in Euplotes
inferredcites →https://doi.org/10.1126/science.1146281openalex-snapshot
Transposase-Derived Transcription Factors Regulate Light Signaling in Arabidopsis
inferredcites →https://doi.org/10.1126/science.1170023openalex-snapshot
A Functional Role for Transposases in a Large Eukaryotic Genome
inferredcites →https://doi.org/10.1126/science.274.5285.249openalex-snapshot
Cdc13p: A Single-Strand Telomeric DNA-Binding Protein with a Dual Role in Yeast Telomere Maintenance
inferredcites →https://doi.org/10.1128/ec.2.5.1076-1090.2003openalex-snapshot
Developmentally Regulated Chromosome Fragmentation Linked to Imprecise Elimination of Repeated Sequences in Paramecia
inferredcites →https://doi.org/10.1128/jvi.47.2.287-300.1983openalex-snapshot
Acquisition of Host Cell DNA Sequences by Baculoviruses: Relationship Between Host DNA Insertions and FP Mutants of Autographa californica and Galleria mellonella Nuclear Polyhedrosis Viruses
inferredcites →https://doi.org/10.1128/mcb.01975-06openalex-snapshot
Tetrahymena POT1a Regulates Telomere Length and Prevents Activation of a Cell CycleCheckpoint
inferredcites →https://doi.org/10.1128/mcb.4.5.931openalex-snapshot
Three Different Macronuclear DNAs in Oxytricha fallax Share a Common Sequence Block
inferredcites →https://doi.org/10.1128/mcb.8.9.3947openalex-snapshot
Sequence structures of two developmentally regulated, alternative DNA deletion junctions in Tetrahymena thermophila.
inferredcites →https://doi.org/10.1128/mmbr.58.2.233-267.1994openalex-snapshot
The DNA of ciliated protozoa.
inferredcites →https://doi.org/10.1128/mr.58.2.233-267.1994openalex-snapshot
The DNA of ciliated protozoa
inferredcites →https://doi.org/10.1142/9781848165632_0019openalex-snapshot
A NEW GENERATION OF HOMOLOGY SEARCH TOOLS BASED ON PROBABILISTIC INFERENCE
inferredcites →https://doi.org/10.1186/1471-2105-10-421openalex-snapshot
BLAST+: architecture and applications
inferredcites →https://doi.org/10.1186/1471-2105-4-41openalex-snapshot
The COG database: an updated version includes eukaryotes
inferredcites →https://doi.org/10.1186/1471-2156-3-16openalex-snapshot
Telomere formation on macronuclear chromosomes of Oxytricha trifallax and O. fallax : alternatively processed regions have multiple telomere addition sites
inferredcites →https://doi.org/10.1186/1471-2164-9-562openalex-snapshot
Refined annotation and assembly of the Tetrahymena thermophila genome sequence through EST analysis, comparative genomic hybridization, and targeted gap closure
inferredcites →https://doi.org/10.1186/1471-2164-9-587openalex-snapshot
Macronuclear genome structure of the ciliate Nyctotherus ovalis: Single-gene chromosomes and tiny introns
inferredcites →https://doi.org/10.1186/gb-2011-12-10-r100openalex-snapshot
Comparative genomics of the pathogenic ciliate Ichthyophthirius multifiliis, its free-living relatives and a host species provide insights into adoption of a parasitic lifestyle and prospects for disease control
inferredcites →https://doi.org/10.1201/9781498713498-11openalex-snapshot
Evolution of Telomere Binding Proteins
inferredcites →https://doi.org/10.1242/jcs.114.10.1861openalex-snapshot
Association of the telomere-telomere-binding protein complex of hypotrichous ciliates with the nuclear matrix and dissociation during replication
inferredcites →https://doi.org/10.1371/journal.pbio.0040286openalex-snapshot
Macronuclear Genome Sequence of the Ciliate Tetrahymena thermophila, a Model Eukaryote
inferredcites →https://doi.org/10.1371/journal.pgen.1002984openalex-snapshot
The Paramecium Germline Genome Provides a Niche for Intragenic Parasitic DNA: Evolutionary Dynamics of Internal Eliminated Sequences
inferredcites →https://doi.org/10.1371/journal.pone.0019816openalex-snapshot
Targeted Assembly of Short Sequence Reads
inferredcites →https://doi.org/10.1371/journal.pone.0022594openalex-snapshot
MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons
inferredcites →https://doi.org/10.1534/genetics.166.3.1529openalex-snapshot
The Effective Size of Mixed Sexually and Asexually Reproducing Populations
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1093/zoolinnean/zlad196zenodo-depositor-declared
An overview of genetic manipulation tools in the studies of ciliates, with emphasis on gene knockout, knockdown, and overexpression
inferred← citeshttps://doi.org/10.1002/1873-3468.12994openalex-snapshot
The unique evolution of the carbohydrate‐binding module CBM 20 in laforin
inferred← citeshttps://doi.org/10.1002/9780470015902.a0025978openalex-snapshot
Stentor, Its Cell Biology and Development
inferred← citeshttps://doi.org/10.1002/9781118647110.ch15openalex-snapshot
Molecular Mechanisms of Somatic Genome Variation
inferred← citeshttps://doi.org/10.1002/9781118647110.ch8openalex-snapshot
RNA ‐Mediated Somatic Genome Rearrangement in Ciliates
inferred← citeshttps://doi.org/10.1002/bies.201300123openalex-snapshot
Beyond transcriptional silencing: Is methylcytosine a widely conserved eukaryotic DNA elimination mechanism?
inferred← citeshttps://doi.org/10.1002/bies.202000305openalex-snapshot
Cancer progression as a sequence of atavistic reversions
inferred← citeshttps://doi.org/10.1002/jez.b.22564openalex-snapshot
Tetrahymena thermophila : A divergent perspective on membrane traffic
inferred← citeshttps://doi.org/10.1007/978-1-4939-1221-6_5openalex-snapshot
Piwi Proteins and piRNAs Step onto the Systems Biology Stage
inferred← citeshttps://doi.org/10.1007/978-3-319-32211-7_3openalex-snapshot
RNA-Guided Genome Editing
inferred← citeshttps://doi.org/10.1007/978-3-319-58592-5_5openalex-snapshot
Evolutionary Lessons from Species with Unique Kinetochores
inferred← citeshttps://doi.org/10.1007/978-3-642-40193-0_12openalex-snapshot
Programmed Genome Processing in Ciliates
inferred← citeshttps://doi.org/10.1007/s00018-020-03555-2openalex-snapshot
Programmed genome rearrangements in ciliates
inferred← citeshttps://doi.org/10.1007/s00239-024-10171-2openalex-snapshot
The Evolutionary Transition of the RNA World to Obcells to Cellular-Based Life
inferred← citeshttps://doi.org/10.1007/s00248-025-02575-4openalex-snapshot
Small Things that Make a Big Difference: Single-Cell Transcriptomic of Nanociliates Reveals Genes Potentially Involved in Mixotrophy
inferred← citeshttps://doi.org/10.1007/s00412-017-0655-4openalex-snapshot
RNA-mediated transgenerational inheritance in ciliates and plants
inferred← citeshttps://doi.org/10.1007/s10126-026-10575-9openalex-snapshot
Standardization of A Method for the Detection of the Genus Prorocentrum, A Dinoflagellate Present in Harmful Algae Blooms (habs) in San Jorge Antofagasta Bay by Digital Droplet Pcr (ddPCR)
inferred← citeshttps://doi.org/10.1007/s11033-019-04942-0openalex-snapshot
Expression and molecular characterization of stress-responsive genes (hsp70 and Mn-sod) and evaluation of antioxidant enzymes (CAT and GPx) in heavy metal exposed freshwater ciliate, Tetmemena sp.
inferred← citeshttps://doi.org/10.1007/s11427-013-4539-4openalex-snapshot
Non-coding RNAs mediate the rearrangements of genomic DNA in ciliates
inferred← citeshttps://doi.org/10.1007/s11427-018-9333-1openalex-snapshot
A paradox: rapid evolution rates of germline-limited sequences are associated with conserved patterns of rearrangements in cryptic species of Chilodonella uncinata (Protista, Ciliophora)
inferred← citeshttps://doi.org/10.1007/s11802-018-3607-6openalex-snapshot
Toxicity of Chlorpyrifos and Dimethoate to the Ciliate Urostyla grandis, with Notes on Their Effects on Cell Ultrastructure
inferred← citeshttps://doi.org/10.1007/s12041-015-0504-2openalex-snapshot
Origin, structure and function of millions of chromosomes present in the macronucleus of unicellular eukaryotic ciliate, Oxytricha trifallax: a model organism for transgenerationally programmed genome rearrangements
inferred← citeshttps://doi.org/10.1007/s13238-015-0147-3openalex-snapshot
Phylogenomics of non-model ciliates based on transcriptomic analyses
inferred← citeshttps://doi.org/10.1007/s13258-017-0611-yopenalex-snapshot
Transcriptional profiling of antioxidant defense system and heat shock protein (Hsp) families in the cadmium- and copper-exposed marine ciliate Euplotes crassu
inferred← citeshttps://doi.org/10.1007/s42995-022-00137-yopenalex-snapshot
Timing and characteristics of nuclear events during conjugation and genomic exclusion in Paramecium multimicronucleatum
inferred← citeshttps://doi.org/10.1007/s42995-023-00175-0openalex-snapshot
Comparative genome analysis of three euplotid protists provides insights into the evolution of nanochromosomes in unicellular eukaryotic organisms
inferred← citeshttps://doi.org/10.1007/s42995-023-00213-xopenalex-snapshot
From germline genome to highly fragmented somatic genome: genome-wide DNA rearrangement during the sexual process in ciliated protists
inferred← citeshttps://doi.org/10.1007/s42995-026-00383-4openalex-snapshot
CiliateBase: a resource for ciliate functional genomics integrating dynamic transcriptomics, epigenomics and comparative analysis
inferred← citeshttps://doi.org/10.1016/b978-0-12-405944-3.00010-6openalex-snapshot
Heritable Generational Epigenetic Effects through RNA
inferred← citeshttps://doi.org/10.1016/b978-0-12-800255-1.00003-xopenalex-snapshot
Unicellular Eukaryotes as Models in Cell and Molecular Biology
inferred← citeshttps://doi.org/10.1016/b978-0-12-803309-8.00007-0openalex-snapshot
From Micronucleus to Macronucleus
inferred← citeshttps://doi.org/10.1016/b978-0-12-816363-4.00009-2openalex-snapshot
Heritable generational epigenetic effects through small noncoding RNA
inferred← citeshttps://doi.org/10.1016/b978-0-323-85679-9.00007-6openalex-snapshot
From micronucleus to macronucleus: Programmed DNA rearrangement in ciliates is regulated by non-coding RNA molecules
inferred← citeshttps://doi.org/10.1016/j.cell.2013.01.005openalex-snapshot
Genomes on the Edge: Programmed Genome Instability in Ciliates
inferred← citeshttps://doi.org/10.1016/j.cell.2014.07.034openalex-snapshot
The Architecture of a Scrambled Genome Reveals Massive Levels of Genomic Rearrangement during Development
inferred← citeshttps://doi.org/10.1016/j.cell.2016.06.020openalex-snapshot
Genetic Codes with No Dedicated Stop Codon: Context-Dependent Translation Termination
inferred← citeshttps://doi.org/10.1016/j.cell.2019.04.028openalex-snapshot
Identification of a DNA N6-Adenine Methyltransferase Complex and Its Impact on Chromatin Organization
inferred← citeshttps://doi.org/10.1016/j.cub.2013.02.041openalex-snapshot
Genome Biology: The Sleek and Oh-So Chic Oxytricha Nanochromosomes
inferred← citeshttps://doi.org/10.1016/j.cub.2016.12.057openalex-snapshot
The Macronuclear Genome of Stentor coeruleus Reveals Tiny Introns in a Giant Cell
inferred← citeshttps://doi.org/10.1016/j.cub.2020.03.064openalex-snapshot
Genomics of New Ciliate Lineages Provides Insight into the Evolution of Obligate Anaerobiosis
inferred← citeshttps://doi.org/10.1016/j.cub.2020.09.077openalex-snapshot
The Function and Evolution of Motile DNA Replication Systems in Ciliates
inferred← citeshttps://doi.org/10.1016/j.ecoenv.2020.110669openalex-snapshot
Ciliates as model organisms for the ecotoxicological risk assessment of heavy metals: A meta–analysis
inferred← citeshttps://doi.org/10.1016/j.ecolind.2022.109095openalex-snapshot
Insights into evaluating the toxic effects of nitrofurazone on ecological integrity in marine ecosystems using periphytic ciliate communities
inferred← citeshttps://doi.org/10.1016/j.ejop.2014.03.002openalex-snapshot
Telomere repeats and macronuclear DNA organization in the soil ciliate Kahliella matisi (Ciliophora, Hypotricha)
inferred← citeshttps://doi.org/10.1016/j.ejop.2016.12.003openalex-snapshot
N 6 -methyladenine DNA modification in the unicellular eukaryotic organism Tetrahymena thermophila
inferred← citeshttps://doi.org/10.1016/j.ejop.2017.06.006openalex-snapshot
A comparative study of genome organization and epigenetic mechanisms in model ciliates, with an emphasis on Tetrahymena , Paramecium and Oxytricha
inferred← citeshttps://doi.org/10.1016/j.ejop.2021.125840openalex-snapshot
DAPI staining and DNA content estimation of nuclei in uncultivable microbial eukaryotes (Arcellinida and Ciliates)
inferred← citeshttps://doi.org/10.1016/j.ejop.2023.125969openalex-snapshot
Comparative analysis of single-cell genome sequencing techniques toward the characterization of germline and somatic genomes in ciliated protists
inferred← citeshttps://doi.org/10.1016/j.gene.2012.05.045openalex-snapshot
Copy number variations of 11 macronuclear chromosomes and their gene expression in Oxytricha trifallax
inferred← citeshttps://doi.org/10.1016/j.gene.2020.145186openalex-snapshot
Functional chimeric genes in ciliates: An instructive case from Euplotes raikovi
inferred← citeshttps://doi.org/10.1016/j.hal.2021.102108openalex-snapshot
Dependence of genome size and copy number of rRNA gene on cell volume in dinoflagellates
inferred← citeshttps://doi.org/10.1016/j.jgg.2021.05.014openalex-snapshot
Chromosome organization and gene expansion in the highly fragmented genome of the ciliate Strombidium stylifer
inferred← citeshttps://doi.org/10.1016/j.jgg.2026.09.011openalex-snapshot
Transcriptional reprogramming and epigenetic regulation in Paramecium caudatum: a new model for studying extreme germline DNA elimination
inferred← citeshttps://doi.org/10.1016/j.jtbi.2016.08.038openalex-snapshot
Recurring patterns among scrambled genes in the encrypted genome of the ciliate Oxytricha trifallax
inferred← citeshttps://doi.org/10.1016/j.marpolbul.2022.113329openalex-snapshot
An approach to determining the nitrofurazone-induced toxic dynamics for ecotoxicity assessment using protozoan periphytons in marine ecosystems
inferred← citeshttps://doi.org/10.1016/j.protis.2014.12.003openalex-snapshot
Cu,Zn Superoxide Dismutases from Tetrahymena thermophila: Molecular Evolution and Gene Expression of the First Line of Antioxidant Defenses
inferred← citeshttps://doi.org/10.1016/j.protis.2015.03.002openalex-snapshot
Amitotic Chromosome Loss Predicts Distinct Patterns of Senescence and Non-Senescence in Ciliates
inferred← citeshttps://doi.org/10.1016/j.tig.2015.04.007openalex-snapshot
It's more than stamp collecting: how genome sequencing can unify biological research
inferred← citeshttps://doi.org/10.1016/j.tig.2017.01.005openalex-snapshot
Necessity Is the Mother of Invention: Ciliates, Transposons, and Transgenerational Inheritance
inferred← citeshttps://doi.org/10.1016/j.tig.2022.02.003openalex-snapshot
Throwing away DNA: programmed downsizing in somatic nuclei
inferred← citeshttps://doi.org/10.1016/j.tig.2022.10.005openalex-snapshot
A proposed metric set for evaluation of genome assembly quality
inferred← citeshttps://doi.org/10.1016/j.ygeno.2021.03.014openalex-snapshot
The macronuclear genome of anaerobic ciliate Entodinium caudatum reveals its biological features adapted to the distinct rumen environment
inferred← citeshttps://doi.org/10.1016/j.ympev.2014.04.020openalex-snapshot
Large-scale phylogenomic analysis reveals the phylogenetic position of the problematic taxon Protocruzia and unravels the deep phylogenetic affinities of the ciliate lineages
inferred← citeshttps://doi.org/10.1016/j.ympev.2015.05.007openalex-snapshot
Phylogenomic analyses reveal subclass Scuticociliatia as the sister group of subclass Hymenostomatia within class Oligohymenophorea
inferred← citeshttps://doi.org/10.1016/j.ympev.2015.11.024openalex-snapshot
Actin evolution in ciliates (Protist, Alveolata) is characterized by high diversity and three duplication events
inferred← citeshttps://doi.org/10.1016/j.ympev.2017.05.023openalex-snapshot
Phylogenomic analysis of integral diiron membrane histidine motif-containing enzymes in ciliates provides insights into their function and evolutionary relationships
inferred← citeshttps://doi.org/10.1016/j.ympev.2018.06.025openalex-snapshot
Phylogenetic relationship analyses of complicated class Spirotrichea based on transcriptomes from three diverse microbial eukaryotes: Uroleptopsis citrina, Euplotes vannus and Protocruzia tuzeti
inferred← citeshttps://doi.org/10.1016/j.ympev.2023.107789openalex-snapshot
Four ciliate-specific expansion events occurred during actin gene family evolution of eukaryotes
inferred← citeshttps://doi.org/10.1016/j.ympev.2023.107936openalex-snapshot
Three closely-related subclasses Phacodiniidia Small & Lynn, 1985, Protohypotrichia Shi et al., 1999, and Euplotia Jankowski, 1979 (Protista, Ciliophora): A new contribution to their phylogeny with reconsiderations on the evolutionary hypotheses
inferred← citeshttps://doi.org/10.1016/j.ympev.2026.108651openalex-snapshot
Comparative genomics of parasitic and symbiotic microeukaryotes: Phylogenomic insights into lifestyle transitions and co-evolutionary dynamics
inferred← citeshttps://doi.org/10.1017/s0031182015001213openalex-snapshot
Diversity of extracellular proteins during the transition from the ‘proto-apicomplexan’ alveolates to the apicomplexan obligate parasites
inferred← citeshttps://doi.org/10.1021/acs.chemrev.7b00487openalex-snapshot
From “Cellular” RNA to “Smart” RNA: Multiple Roles of RNA in Genome Stability and Beyond
inferred← citeshttps://doi.org/10.1038/nature13965openalex-snapshot
Transferred interbacterial antagonism genes augment eukaryotic innate immune function
inferred← citeshttps://doi.org/10.1038/nsmb.3330openalex-snapshot
Position-dependent termination and widespread obligatory frameshifting in Euplotes translation
inferred← citeshttps://doi.org/10.1038/s41396-018-0341-4openalex-snapshot
Genetic basis for the establishment of endosymbiosis in Paramecium
inferred← citeshttps://doi.org/10.1038/s41396-022-01306-8openalex-snapshot
Genomic insights into the phylogeny and biomass-degrading enzymes of rumen ciliates
inferred← citeshttps://doi.org/10.1038/s41576-026-01004-7openalex-snapshot
The mechanistic and evolutionary diversity of programmed DNA elimination
inferred← citeshttps://doi.org/10.1038/s41588-025-02230-1openalex-snapshot
How and when organisms edit their own genomes
inferred← citeshttps://doi.org/10.1038/s41596-019-0169-zopenalex-snapshot
Derivation and maintenance of mouse haploid embryonic stem cells
inferred← citeshttps://doi.org/10.1038/s41597-023-02842-4openalex-snapshot
MarFERReT, an open-source, version-controlled reference library of marine microbial eukaryote functional genes
inferred← citeshttps://doi.org/10.1038/s41598-018-33127-1openalex-snapshot
Antarctic marine ciliates under stress: superoxide dismutases from the psychrophilic Euplotes focardii are cold-active yet heat tolerant enzymes
inferred← citeshttps://doi.org/10.1038/s41598-021-98168-5openalex-snapshot
The macronuclear genome of the Antarctic psychrophilic marine ciliate Euplotes focardii reveals new insights on molecular cold adaptation
inferred← citeshttps://doi.org/10.1038/srep21139openalex-snapshot
High frequency of +1 programmed ribosomal frameshifting in Euplotes octocarinatus
inferred← citeshttps://doi.org/10.1051/parasite/2017043openalex-snapshot
Phylogenomic analysis ofBalantidium ctenopharyngodoni(Ciliophora, Litostomatea) based on single-cell transcriptome sequencing
inferred← citeshttps://doi.org/10.1073/pnas.2213887120openalex-snapshot
Origins of genome-editing excisases as illuminated by the somatic genome of the ciliate Blepharisma
inferred← citeshttps://doi.org/10.1073/pnas.2213985120openalex-snapshot
MITE infestation accommodated by genome editing in the germline genome of the ciliate Blepharisma
inferred← citeshttps://doi.org/10.1073/pnas.2221683120openalex-snapshot
Nontriplet feature of genetic code in Euplotes ciliates is a result of neutral evolution
inferred← citeshttps://doi.org/10.1073/pnas.2400503121openalex-snapshot
Nuclear dualism without extensive DNA elimination in the ciliate Loxodes magnus
inferred← citeshttps://doi.org/10.1073/pnas.2536061123openalex-snapshot
Cellular remodeling during reversible life-stage transition in sessile ciliates: Genomic and transcriptomic insights
inferred← citeshttps://doi.org/10.1080/15384101.2018.1558871openalex-snapshot
Time-course analysis of nuclear events during conjugation in the marine ciliate Euplotes vannus and comparison with other ciliates (Protozoa, Ciliophora)
inferred← citeshttps://doi.org/10.1080/15476286.2016.1195940openalex-snapshot
Chromosome fusions triggered by noncoding RNA
inferred← citeshttps://doi.org/10.1083/jcb.201502016openalex-snapshot
The expanding implications of polyploidy
inferred← citeshttps://doi.org/10.1093/bfgp/ely004openalex-snapshot
ChIP-ping the branches of the tree: functional genomics and the evolution of eukaryotic gene regulation
inferred← citeshttps://doi.org/10.1093/bioinformatics/btaa226openalex-snapshot
ADFinder: accurate detection of programmed DNA elimination using NGS high-throughput sequencing data
inferred← citeshttps://doi.org/10.1093/database/baz029openalex-snapshot
Tetrahymena Comparative Genomics Database (TCGD): a community resource for Tetrahymena
inferred← citeshttps://doi.org/10.1093/g3journal/jkab092openalex-snapshot
Transcribed germline-limited coding sequences in Oxytricha trifallax
inferred← citeshttps://doi.org/10.1093/gbe/evaa147openalex-snapshot
SIGAR: Inferring Features of Genome Architecture and DNA Rearrangements by Split-Read Mapping
inferred← citeshttps://doi.org/10.1093/gbe/evaa185openalex-snapshot
Combined Genome and Transcriptome Analyses of the Ciliate Schmidingerella arcuata (Spirotrichea) Reveal Patterns of DNA Elimination, Scrambling, and Inversion
inferred← citeshttps://doi.org/10.1093/gbe/evu139openalex-snapshot
The Draft Assembly of the Radically Organized Stylonychia lemnae Macronuclear Genome
inferred← citeshttps://doi.org/10.1093/gbe/evv172openalex-snapshot
Combinatorial DNA rearrangement facilitates the origin of new genes in ciliates
inferred← citeshttps://doi.org/10.1093/gbe/evw099openalex-snapshot
Nuclear Architecture and Patterns of Molecular Evolution Are Correlated in the CiliateChilodonella uncinata
inferred← citeshttps://doi.org/10.1093/gbe/evw207openalex-snapshot
Hyper-eccentric structural genes in the mitochondrial genome of the algal parasiteHemistasia phaeocysticola
inferred← citeshttps://doi.org/10.1093/gbe/evy055openalex-snapshot
Insights into an Extensively Fragmented Eukaryotic Genome: De Novo Genome Sequencing of the Multinuclear Ciliate Uroleptopsis citrina
inferred← citeshttps://doi.org/10.1093/gbe/evy133openalex-snapshot
Twisted Tales: Insights into Genome Diversity of Ciliates Using Single-Cell ‘Omics
inferred← citeshttps://doi.org/10.1093/jhered/esw041openalex-snapshot
The Evolution of Genome Structure by Natural and Sexual Selection
inferred← citeshttps://doi.org/10.1093/molbev/msac062openalex-snapshot
An Extremely Streamlined Macronuclear Genome in the Free-Living Protozoan Fabrea salina
inferred← citeshttps://doi.org/10.1093/molbev/msad064openalex-snapshot
Stop or Not: Genome-Wide Profiling of Reassigned Stop Codons in Ciliates
inferred← citeshttps://doi.org/10.1093/molbev/mst258openalex-snapshot
Meiosis Gene Inventory of Four Ciliates Reveals the Prevalence of a Synaptonemal Complex-Independent Crossover Pathway
inferred← citeshttps://doi.org/10.1093/molbev/msu150openalex-snapshot
Novel Population Genetics in Ciliates due to Life Cycle and Nuclear Dimorphism
inferred← citeshttps://doi.org/10.1093/nar/gkaf577openalex-snapshot
Relaxed DNA substrate specificity of transposases involved in programmed genome rearrangement
inferred← citeshttps://doi.org/10.1093/nar/gkag063openalex-snapshot
Splicing regulation and intron evolution in the short-intron ciliate model of endosymbiosis Paramecium bursaria
inferred← citeshttps://doi.org/10.1093/nar/gkv1190openalex-snapshot
: a database of ciliate genome rearrangements
inferred← citeshttps://doi.org/10.1093/nar/gkz1053openalex-snapshot
A distinct class of eukaryotic MT-A70 methyltransferases maintain symmetric DNA N6-adenine methylation at the ApT dinucleotides as an epigenetic mark associated with transcription
inferred← citeshttps://doi.org/10.1093/nar/gkz553openalex-snapshot
Exogenous RNAi mechanisms contribute to transcriptome adaptation by phased siRNA clusters in Paramecium
inferred← citeshttps://doi.org/10.1093/nar/gkz725openalex-snapshot
Programmed genome rearrangements in Oxytricha produce transcriptionally active extrachromosomal circular DNA
inferred← citeshttps://doi.org/10.1093/nargab/lqad096openalex-snapshot
SDRAP for annotating scrambled or rearranged genomes
inferred← citeshttps://doi.org/10.1093/nsr/nwag117openalex-snapshot
Cross-domain transfer of trehalose biosynthesis genes contributes to adaptation in high-altitude environments
inferred← citeshttps://doi.org/10.1098/rsob.230111openalex-snapshot
Genome-wide identification of ATP-binding cassette transporter B subfamily, focusing on its structure, evolution and rearrangement in ciliates
inferred← citeshttps://doi.org/10.1098/rspb.2017.0425openalex-snapshot
Disentangling sources of variation in SSU rDNA sequences from single cell analyses of ciliates: impact of copy number variation and experimental error
inferred← citeshttps://doi.org/10.1099/mgen.0.001175openalex-snapshot
The macronuclear genomic landscape within Tetrahymena thermophila
inferred← citeshttps://doi.org/10.1101/184929openalex-snapshot
Synthesis of a eukaryotic chromosome reveals a role for N6-methyladenine in nucleosome organization
inferred← citeshttps://doi.org/10.1101/2021.12.14.471607openalex-snapshot
Genome editing excisase origins illuminated by somatic genome of Blepharisma
inferred← citeshttps://doi.org/10.1101/2022.05.02.489906openalex-snapshot
MITE infestation of germline accommodated by genome editing in Blepharisma
inferred← citeshttps://doi.org/10.1101/2024.12.31.630814openalex-snapshot
Widespread 3D genome reorganization precedes programmed DNA rearrangement in Oxytricha trifallax
inferred← citeshttps://doi.org/10.1101/357715openalex-snapshot
Genome analysis of the unicellular eukaryote Euplotes vannus reveals molecular basis for sex determination and tolerance to environmental stresses
inferred← citeshttps://doi.org/10.1101/475384openalex-snapshot
Reconstitution of eukaryotic chromosomes and manipulation of DNA N6-methyladenine alters chromatin and gene expression
inferred← citeshttps://doi.org/10.1101/gad.327312.119openalex-snapshot
Host–transposon interactions: conflict, cooperation, and cooption
inferred← citeshttps://doi.org/10.1111/1755-0998.12750openalex-snapshot
GPS it: An automated method for evolutionary analysis of nonculturable ciliated microeukaryotes
inferred← citeshttps://doi.org/10.1111/1755-0998.13023openalex-snapshot
Genome analyses of the new model protist Euplotes vannus focusing on genome rearrangement and resistance to environmental stressors
inferred← citeshttps://doi.org/10.1111/1755-0998.13664openalex-snapshot
Genome architecture used to supplement species delineation in two cryptic marine ciliates
inferred← citeshttps://doi.org/10.1111/jeu.12156openalex-snapshot
Comparative Genomic Analysis of Integral Membrane Transport Proteins in Ciliates
inferred← citeshttps://doi.org/10.1111/jeu.12677openalex-snapshot
The Sub‐Chromosomic Macronuclear Pheromone Genes of the Ciliate Euplotes raikovi: Comparative Structural Analysis and Insights into the Mechanism of Expression
inferred← citeshttps://doi.org/10.1111/jeu.12746openalex-snapshot
Exploration of Genetic Variations through Single‐cell Whole‐genome Sequencing in the Model Ciliate Tetrahymena thermophila
inferred← citeshttps://doi.org/10.1111/jeu.12898openalex-snapshot
Macronuclear development in ciliates, with a focus on nuclear architecture
inferred← citeshttps://doi.org/10.1111/jeu.12914openalex-snapshot
Paramecium epigenetics in development and proliferation
inferred← citeshttps://doi.org/10.1111/jeu.12919openalex-snapshot
Molecular evolutionary analysis of the SM and SNARE vesicle fusion machinery in ciliates shows concurrent expansions in late secretory machinery
inferred← citeshttps://doi.org/10.1111/jeu.12926openalex-snapshot
Ciliate research: From myth to trendsetting science
inferred← citeshttps://doi.org/10.1111/jeu.12934openalex-snapshot
Evolutionary bioenergetics of ciliates
inferred← citeshttps://doi.org/10.1111/jeu.12958openalex-snapshot
Novel insights into molecular mechanisms of vegetative cell cycle and resting cyst formation in Apodileptus cf. visscheri (Alveolata, Ciliophora)
inferred← citeshttps://doi.org/10.1111/jeu.70065openalex-snapshot
Genetic Features of the Scuticociliate Pathogen Philaster sp. Isolate FWC2 That Causes Sea Urchin Mass Mortality
inferred← citeshttps://doi.org/10.1111/nyas.12235openalex-snapshot
In Darwinian evolution, feedback from natural selection leads to biased mutations
inferred← citeshttps://doi.org/10.1111/nyas.12636openalex-snapshot
The eukaryotic way to defend and edit genomes by sRNA‐targeted DNA deletion
inferred← citeshttps://doi.org/10.1126/sciadv.adx3690openalex-snapshot
Soma-derived 30-nt small RNAs are coupled with chromosome breakage and precisely target nontransposon DNA against elimination in Euplotes vannus
inferred← citeshttps://doi.org/10.1128/9781555819217.ch18openalex-snapshot
Programmed Genome Rearrangements in the Ciliate Oxytricha
inferred← citeshttps://doi.org/10.1128/mbio.01836-17openalex-snapshot
Exploration of the Germline Genome of the Ciliate Chilodonella uncinata through Single-Cell Omics (Transcriptomics and Genomics)
inferred← citeshttps://doi.org/10.1128/mbio.01964-20openalex-snapshot
The Compact Macronuclear Genome of the Ciliate Halteria grandinella: A Transcriptome-Like Genome with 23,000 Nanochromosomes
inferred← citeshttps://doi.org/10.1128/mbio.01998-14openalex-snapshot
Analyses of Alternatively Processed Genes in Ciliates Provide Insights into the Origins of Scrambled Genomes and May Provide a Mechanism for Speciation
inferred← citeshttps://doi.org/10.1128/mbio.03032-25openalex-snapshot
Molecular basis of the short- and long-term osmoregulation capability in the euryhaline unicellular eukaryote Paramecium calkinsi
inferred← citeshttps://doi.org/10.1128/microbiolspec.mdna3-0025-2014openalex-snapshot
Programmed Genome Rearrangements in the CiliateOxytricha
inferred← citeshttps://doi.org/10.1128/mmbr.00184-22openalex-snapshot
Programmed chromosome fragmentation in ciliated protozoa: multiple means to chromosome ends
inferred← citeshttps://doi.org/10.1128/mra.00412-24openalex-snapshot
Draft macronuclear genome sequence of the marine ciliate Miamiensis avidus causing flatfish scuticociliatosis
inferred← citeshttps://doi.org/10.1128/mra.00826-18openalex-snapshot
Draft Macronuclear Genome Sequence of the Ruminal Ciliate Entodinium caudatum
inferred← citeshttps://doi.org/10.1128/msystems.01757-25openalex-snapshot
Probing the genomic and proteomic basis of encystment in Oxytricha granulifera
inferred← citeshttps://doi.org/10.1146/annurev-cellbio-120420-020656openalex-snapshot
Recent Advances in Ciliate Biology
inferred← citeshttps://doi.org/10.1146/annurev-micro-102215-095448openalex-snapshot
Protists and the Wild, Wild West of Gene Expression: New Frontiers, Lawlessness, and Misfits
inferred← citeshttps://doi.org/10.1163/22244662-bja10063openalex-snapshot
The neglected role of ciliates as bioindicators
inferred← citeshttps://doi.org/10.1186/s12859-018-2422-9openalex-snapshot
CiliateGEM: an open-project and a tool for predictions of ciliate metabolic variations and experimental condition design
inferred← citeshttps://doi.org/10.1186/s12864-019-6189-9openalex-snapshot
Capture of complete ciliate chromosomes in single sequencing reads reveals widespread chromosome isoforms
inferred← citeshttps://doi.org/10.1186/s12864-024-10207-3openalex-snapshot
Decryption of the survival “black box”: gene family expansion promotes the encystment in ciliated protists
inferred← citeshttps://doi.org/10.1186/s12915-020-00912-2openalex-snapshot
Genome plasticity in Paramecium bursaria revealed by population genomics
inferred← citeshttps://doi.org/10.1186/s13100-016-0057-9openalex-snapshot
Phylogenomic analysis reveals genome-wide purifying selection on TBE transposons in the ciliate Oxytricha
inferred← citeshttps://doi.org/10.1186/s13100-020-00212-0openalex-snapshot
Phylogenetic analysis of the Tc1/mariner superfamily reveals the unexplored diversity of pogo-like elements
inferred← citeshttps://doi.org/10.1242/jcs.261256openalex-snapshot
Global and local functions of the Fused kinase ortholog CdaH in intracellular patterning in Tetrahymena
inferred← citeshttps://doi.org/10.1261/rna.058511.116openalex-snapshot
Thousands of RNA-cached copies of whole chromosomes are present in the ciliate Oxytricha during development
inferred← citeshttps://doi.org/10.1261/rna.061333.117openalex-snapshot
Small RNA-mediated regulation of DNA dosage in the ciliate Oxytricha
inferred← citeshttps://doi.org/10.13140/rg.2.2.16651.49446openalex-snapshot
Conceptual and Empirical Investigations of Eukaryotic Transposable Element Evolution
inferred← citeshttps://doi.org/10.1360/n052016-00335openalex-snapshot
Small-interfering RNA-mediated epigenetics and gene regulation in the nucleus
inferred← citeshttps://doi.org/10.1371/journal.pbio.1001470openalex-snapshot
Tantalizing Glimpses into a Fragmented Genome
inferred← citeshttps://doi.org/10.1371/journal.pbio.1001889openalex-snapshot
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing
inferred← citeshttps://doi.org/10.1371/journal.pbio.1002216openalex-snapshot
Where Next for Genetics and Genomics?
inferred← citeshttps://doi.org/10.1371/journal.pgen.1003659openalex-snapshot
Transposon Domestication versus Mutualism in Ciliate Genome Rearrangements
inferred← citeshttps://doi.org/10.1371/journal.pgen.1010913openalex-snapshot
Identification of a non-canonical ciliate nuclear genetic code where UAA and UAG code for different amino acids
inferred← citeshttps://doi.org/10.1371/journal.pone.0064997openalex-snapshot
A Model for the Evolution of Extremely Fragmented Macronuclei in Ciliates
inferred← citeshttps://doi.org/10.1371/journal.pone.0096566openalex-snapshot
Evolution of Mitochondria Reconstructed from the Energy Metabolism of Living Bacteria
inferred← citeshttps://doi.org/10.1371/journal.pone.0101418openalex-snapshot
De Novo Transcriptomes of a Mixotrophic and a Heterotrophic Ciliate from Marine Plankton
inferred← citeshttps://doi.org/10.1371/journal.pone.0161476openalex-snapshot
Evolution of the Exon-Intron Structure in Ciliate Genomes
inferred← citeshttps://doi.org/10.1371/journal.pone.0170870openalex-snapshot
Preferential expression of scores of functionally and evolutionarily diverse DNA and RNA-binding proteins during Oxytricha trifallax macronuclear development
inferred← citeshttps://doi.org/10.1371/journal.pone.0326053openalex-snapshot
Genetic variability in microbial eukaryotes reshapes marine biodiversity assessment in the age of amplicon sequencing
inferred← citeshttps://doi.org/10.1534/g3.116.036848openalex-snapshot
Meeting Report: The Allied Genetics Conference 2016
inferred← citeshttps://doi.org/10.1534/g3.118.200176openalex-snapshot
Russian Doll Genes and Complex Chromosome Rearrangements in Oxytricha trifallax
inferred← citeshttps://doi.org/10.1534/g3.118.200930openalex-snapshot
Programmed Chromosome Deletion in the Ciliate Oxytricha trifallax
inferred← citeshttps://doi.org/10.1534/g3.119.400298openalex-snapshot
Transformation with Artificial Chromosomes in Oxytricha trifallax and Their Applications
inferred← citeshttps://doi.org/10.1534/genetics.114.163279openalex-snapshot
Transcription-Independent Functions of an RNA Polymerase II Subunit, Rpb2, During Genome Rearrangement in the Ciliate, Oxytricha trifallax
inferred← citeshttps://doi.org/10.1590/s2179-975x6719openalex-snapshot
Ciliates in ecotoxicological studies: A minireview
inferred← citeshttps://doi.org/10.17816/ecogen1645-22openalex-snapshot
RNA interference in formation of the somatic genome of ciliates Paramecium and Tetrahymena
inferred← citeshttps://doi.org/10.2217/epi.13.15openalex-snapshot
RNA-Dependent Genome Processing During Nuclear Differentiation: The Model Systems of Stichotrichous Ciliates
inferred← citeshttps://doi.org/10.24072/pcjournal.141openalex-snapshot
Karyorelict ciliates use an ambiguous genetic code with context-dependent stop/sense codons
inferred← citeshttps://doi.org/10.25959/23245829openalex-snapshot
An investigation into the conceptualisation of electronic communications by youth across different socio-economic groupings in the Launceston region
inferred← citeshttps://doi.org/10.3330/hikakuseiriseika.33.108openalex-snapshot
Endosymbiosis in Paramecium bursaria
inferred← citeshttps://doi.org/10.3389/fgene.2025.1538168openalex-snapshot
Tetrahymena thermophila glutathione-S-transferase superfamily: an eco-paralogs gene network differentially responding to various environmental abiotic stressors and an update on this gene family in ciliates
inferred← citeshttps://doi.org/10.3389/fmicb.2015.01313openalex-snapshot
The Role of Ciliate Protozoa in the Rumen
inferred← citeshttps://doi.org/10.3389/fmicb.2019.02819openalex-snapshot
Comparative Genomics Analysis of Ciliates Provides Insights on the Evolutionary History Within “Nassophorea–Synhymenia–Phyllopharyngea” Assemblage
inferred← citeshttps://doi.org/10.3389/fmicb.2020.549781openalex-snapshot
Morpholino-Mediated Knockdown of Ciliary Genes in Euplotes vannus, a Novel Marine Ciliated Model Organism
inferred← citeshttps://doi.org/10.3389/fmicb.2022.775646openalex-snapshot
Comparative Genome Analysis Reveals Cis-Regulatory Elements on Gene-Sized Chromosomes of Ciliated Protists
inferred← citeshttps://doi.org/10.3390/biology6040042openalex-snapshot
Living Organisms Author Their Read-Write Genomes in Evolution
inferred← citeshttps://doi.org/10.3390/ijms222111585openalex-snapshot
The 3D Genome: From Structure to Function
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