On the public citation graph
A Universal Probe Set for Targeted Sequencing of 353 Nuclear Genes from Any Flowering Plant Designed Using k-medoids Clustering
0 signed · 138 inferred · view as graph
Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.
Is this your work? Sign in with ORCID and put your name on the
claims that are yours.
Reference health. See whether every reference in this work resolves to a
known work and none has been retracted — and get a dated CiteStamped
badge you can embed.
What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/ajb2.1019openalex-snapshot
Constructing a broadly inclusive seed plant phylogeny
inferredcites →https://doi.org/10.1002/ajb2.1041openalex-snapshot
A roadmap for global synthesis of the plant tree of life
inferredcites →https://doi.org/10.1002/ajb2.1048openalex-snapshot
Plastid phylogenomic analysis of green plants: A billion years of evolutionary history
inferredcites →https://doi.org/10.1002/ajb2.1069openalex-snapshot
From cacti to carnivores: Improved phylotranscriptomic sampling and hierarchical homology inference provide further insight into the evolution of Caryophyllales
inferredcites →https://doi.org/10.1002/aps3.1038openalex-snapshot
Practical considerations for plant phylogenomics
inferredcites →https://doi.org/10.1016/0031-9422(80)85004-7openalex-snapshot
Deviations from michaelis-menten behaviour of plant glutamate dehydrogenase with ammonium as variable substrate
inferredcites →https://doi.org/10.1016/j.ympev.2012.07.015openalex-snapshot
Using nuclear gene data for plant phylogenetics: Progress and prospects
inferredcites →https://doi.org/10.1016/j.ympev.2017.04.003openalex-snapshot
Deep reticulation and incomplete lineage sorting obscure the diploid phylogeny of rain-lilies and allies (Amaryllidaceae tribe Hippeastreae)
inferredcites →https://doi.org/10.1016/j.ympev.2017.12.002openalex-snapshot
Evolutionary dynamism in bryophytes: Phylogenomic inferences confirm rapid radiation in the moss family Funariaceae
inferredcites →https://doi.org/10.1016/j.ympev.2018.02.016openalex-snapshot
Pseudo-parallel patterns of disjunctions in an Arctic-alpine plant lineage
inferredcites →https://doi.org/10.1016/s1055-7903(03)00208-2openalex-snapshot
Ribosomal ITS sequences and plant phylogenetic inference
inferredcites →https://doi.org/10.1038/nature09916openalex-snapshot
Ancestral polyploidy in seed plants and angiosperms
inferredcites →https://doi.org/10.1038/nature15697openalex-snapshot
A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing
inferredcites →https://doi.org/10.1038/nature19417openalex-snapshot
A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing
inferredcites →https://doi.org/10.1038/nplants.2017.15openalex-snapshot
Palaeobotanical redux: revisiting the age of the angiosperms
inferredcites →https://doi.org/10.1038/nrg.2015.28openalex-snapshot
Harnessing the power of RADseq for ecological and evolutionary genomics
inferredcites →https://doi.org/10.1073/pnas.1323926111openalex-snapshot
Phylotranscriptomic analysis of the origin and early diversification of land plants
inferredcites →https://doi.org/10.1080/07352689309701903openalex-snapshot
Molecular Data and the Dynamic Nature of Polyploidy
inferredcites →https://doi.org/10.1089/cmb.2012.0021openalex-snapshot
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/gbe/evp040openalex-snapshot
Paleopolyploidy in the Brassicales: Analyses of the Cleome Transcriptome Elucidate the History of Genome Duplications in Arabidopsis and Other Brassicales
inferredcites →https://doi.org/10.1093/genetics/131.2.509openalex-snapshot
Gene trees, species trees and the segregation of ancestral alleles.
inferredcites →https://doi.org/10.1093/molbev/msv081openalex-snapshot
Dissecting Molecular Evolution in the Highly Diverse Plant Clade Caryophyllales Using Transcriptome Sequencing
inferredcites →https://doi.org/10.1093/molbev/msv082openalex-snapshot
A Phylogenetic Analysis of 34 Chloroplast Genomes Elucidates the Relationships between Wild and Domestic Species within the Genus Citrus
inferredcites →https://doi.org/10.1093/molbev/msx111openalex-snapshot
Interspecific Plastome Recombination Reflects Ancient Reticulate Evolution in Picea (Pinaceae)
inferredcites →https://doi.org/10.1093/sysbio/43.4.467openalex-snapshot
Combining Data in Phylogenetic Systematics: An Empirical Approach Using Three Molecular Data Sets in the Solanaceae
inferredcites →https://doi.org/10.1093/sysbio/sys004openalex-snapshot
Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales
inferredcites →https://doi.org/10.1093/sysbio/sys049openalex-snapshot
Anchored Hybrid Enrichment for Massively High-Throughput Phylogenomics
inferredcites →https://doi.org/10.1093/sysbio/syw092openalex-snapshot
Misconceptions on Missing Data in RAD-seq Phylogenetics with a Deep-scale Example from Flowering Plants
inferredcites →https://doi.org/10.1093/sysbio/syx050openalex-snapshot
Resolving Rapid Radiations within Angiosperm Families Using Anchored Phylogenomics
inferredcites →https://doi.org/10.1098/rstb.2015.0338openalex-snapshot
Telling plant species apart with DNA: from barcodes to genomes
inferredcites →https://doi.org/10.1105/tpc.021345openalex-snapshot
Widespread Paleopolyploidy in Model Plant Species Inferred from Age Distributions of Duplicate Genes[W]
inferredcites →https://doi.org/10.1111/2041-210x.12754openalex-snapshot
Identifying conserved genomic elements and designing universal bait sets to enrich them
inferredcites →https://doi.org/10.1111/bij.12551openalex-snapshot
Phylogenomic analyses of species relationships in the genusSabal(Arecaceae) using targeted sequence capture
inferredcites →https://doi.org/10.1111/boj.12385openalex-snapshot
An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV
inferredcites →https://doi.org/10.1111/evo.13203openalex-snapshot
Embracing discordance: Phylogenomic analyses provide evidence for allopolyploidy leading to cryptic diversity in a MediterraneanCampanula(Campanulaceae) clade
inferredcites →https://doi.org/10.1111/nph.14503openalex-snapshot
Resolution of deep eudicot phylogeny and their temporal diversification using nuclear genes from transcriptomic and genomic datasets
inferredcites →https://doi.org/10.1111/nph.15011openalex-snapshot
Constraining uncertainty in the timescale of angiosperm evolution and the veracity of a Cretaceous Terrestrial Revolution
inferredcites →https://doi.org/10.1126/science.1241089openalex-snapshot
The Amborella Genome and the Evolution of Flowering Plants
inferredcites →https://doi.org/10.11646/phytotaxa.261.3.1openalex-snapshot
The number of known plants species in the world and its annual increase
inferredcites →https://doi.org/10.11646/phytotaxa.9.1.8openalex-snapshot
A synthesis of hornwort diversity: Patterns, causes and future work
inferredcites →https://doi.org/10.1186/1471-2105-6-31openalex-snapshot
Automated generation of heuristics for biological sequence comparison
inferredcites →https://doi.org/10.1186/1471-2148-14-23openalex-snapshot
From algae to angiosperms–inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes
inferredcites →https://doi.org/10.1186/2047-217x-3-17openalex-snapshot
Data access for the 1,000 Plants (1KP) project
inferredcites →https://doi.org/10.1186/s12862-017-0989-9openalex-snapshot
Dated tribe-wide whole chloroplast genome phylogeny indicates recurrent hybridizations within Triticeae
inferredcites →https://doi.org/10.1186/s12864-017-3868-2openalex-snapshot
Comparative transcriptomic analysis of the evolution and development of flower size in Saltugilia (Polemoniaceae)
inferredcites →https://doi.org/10.1186/s13059-015-0721-2openalex-snapshot
OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
inferredcites →https://doi.org/10.1371/journal.pone.0098986openalex-snapshot
Some Limitations of Public Sequence Data for Phylogenetic Inference (in Plants)
inferredcites →https://doi.org/10.2307/2399279openalex-snapshot
Chloroplast DNA Variation and Plant Phylogeny
inferredcites →https://doi.org/10.2307/2399846openalex-snapshot
Phylogenetics of Seed Plants: An Analysis of Nucleotide Sequences from the Plastid Gene rbcL
inferredcites →https://doi.org/10.3389/fpls.2015.01144openalex-snapshot
The Phenotypic and Genetic Underpinnings of Flower Size in Polemoniaceae
inferredcites →https://doi.org/10.3732/ajb.0900346openalex-snapshot
The age and diversification of the angiosperms re‐revisited
inferredcites →https://doi.org/10.3732/apps.1300085openalex-snapshot
A target enrichment method for gathering phylogenetic information from hundreds of loci: An example from the Compositae
inferredcites →https://doi.org/10.3732/apps.1400042openalex-snapshot
Hyb‐Seq: Combining target enrichment and genome skimming for plant phylogenomics
inferredcites →https://doi.org/10.3732/apps.1400115openalex-snapshot
MarkerMiner 1.0: A new application for phylogenetic marker development using angiosperm transcriptomes
inferredcites →https://doi.org/10.3732/apps.1600016openalex-snapshot
HybPiper: Extracting coding sequence and introns for phylogenetics from high‐throughput sequencing reads using target enrichment
inferredcites →https://doi.org/10.3732/apps.1600017openalex-snapshot
Low‐coverage, whole‐genome sequencing of Artocarpus camansi (Moraceae) for phylogenetic marker development and gene discovery
inferredcites →https://doi.org/10.7717/peerj.3569openalex-snapshot
Targeted NGS for species level phylogenomics: “made to measure” or “one size fits all”?
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1002/ajb2.1069openalex-snapshot
From cacti to carnivores: Improved phylotranscriptomic sampling and hierarchical homology inference provide further insight into the evolution of Caryophyllales
inferred← citeshttps://doi.org/10.1002/ajb2.1702openalex-snapshot
Hundreds of nuclear and plastid loci yield novel insights into orchid relationships
inferred← citeshttps://doi.org/10.1002/aps3.11441openalex-snapshot
HybPhaser: A workflow for the detection and phasing of hybrids in target capture data sets
inferred← citeshttps://doi.org/10.1007/s12225-025-10265-0openalex-snapshot
Expanding Ventilago to incorporate Smythea: new combinations in Ventilagineae (Rhamnaceae) based on novel sequence data and phylogenetic analysis
inferred← citeshttps://doi.org/10.1007/s44281-023-00026-zopenalex-snapshot
Integrating genomic sequencing resources: an innovative perspective on recycling with universal Angiosperms353 probe sets
inferred← citeshttps://doi.org/10.1016/j.pld.2025.06.009openalex-snapshot
Boechera or not? Genomic insights and taxonomic reassessment of the misclassified Asian species B. calcarea (Brassicaceae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2019.02.018openalex-snapshot
Phylogenomic conflict resulting from ancient introgression following species diversification in Stewartia s.l. (Theaceae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2019.02.020openalex-snapshot
Target sequence capture in the Brazil nut family (Lecythidaceae): Marker selection and in silico capture from genome skimming data
inferred← citeshttps://doi.org/10.1016/j.ympev.2019.106672openalex-snapshot
Resolving relationships in an exceedingly young Neotropical orchid lineage using Genotyping-by-sequencing data
inferred← citeshttps://doi.org/10.1016/j.ympev.2022.107430openalex-snapshot
Peeling back the layers: First phylogenomic insights into the Ledebouriinae (Scilloideae, Asparagaceae)
inferred← citeshttps://doi.org/10.1038/s41467-022-28312-wopenalex-snapshot
Buxus and Tetracentron genomes help resolve eudicot genome history
inferred← citeshttps://doi.org/10.1038/s41477-024-01649-4openalex-snapshot
Blocking then stinging as a case of two-step evolution of defensive cage architectures in herbivore-driven ecosystems
inferred← citeshttps://doi.org/10.1038/s41477-025-02073-yopenalex-snapshot
Genomic data define species delimitation in Liberica coffee with implications for crop development and conservation
inferred← citeshttps://doi.org/10.1038/s41586-024-07324-0openalex-snapshot
Phylogenomics and the rise of the angiosperms
inferred← citeshttps://doi.org/10.1093/oso/9780198856566.001.0001openalex-snapshot
Conservation and the Genomics of Populations
inferred← citeshttps://doi.org/10.1093/oso/9780198856566.002.0006openalex-snapshot
Preface to the Third Edition
inferred← citeshttps://doi.org/10.1093/oso/9780198856566.002.0010openalex-snapshot
List of Abbreviations
inferred← citeshttps://doi.org/10.1093/oso/9780198856566.003.0002openalex-snapshot
Phenotypic Variation in Natural Populations
inferred← citeshttps://doi.org/10.1093/oso/9780198856566.003.0003openalex-snapshot
Genetic Variation in Natural Populations
inferred← citeshttps://doi.org/10.1093/oso/9780198856566.003.0004openalex-snapshot
Population Genomics
inferred← citeshttps://doi.org/10.1093/oso/9780198856566.003.0005openalex-snapshot
Random mating populations: Hardy–Weinberg Principle
inferred← citeshttps://doi.org/10.1093/oso/9780198856566.003.0006openalex-snapshot
Small Populations and Genetic Drift
inferred← citeshttps://doi.org/10.1093/oso/9780198856566.003.0007openalex-snapshot
Effective Population Size
inferred← citeshttps://doi.org/10.1093/oso/9780198856566.003.0009openalex-snapshot
Population Subdivision
inferred← citeshttps://doi.org/10.1093/oso/9780198856566.003.0010openalex-snapshot
Beyond Individual Loci
inferred← citeshttps://doi.org/10.1093/oso/9780198856566.003.0011openalex-snapshot
Quantitative Genetics
inferred← citeshttps://doi.org/10.1093/oso/9780198856566.003.0015openalex-snapshot
Exploited Populations
inferred← citeshttps://doi.org/10.1093/oso/9780198856566.003.0017openalex-snapshot
Inbreeding Depression
inferred← citeshttps://doi.org/10.1093/oso/9780198856566.003.0018openalex-snapshot
Demography and Extinction
inferred← citeshttps://doi.org/10.1093/oso/9780198856566.003.0019openalex-snapshot
Population Connectivity
inferred← citeshttps://doi.org/10.1093/oso/9780198856566.003.0020openalex-snapshot
Conservation Units
inferred← citeshttps://doi.org/10.1093/oso/9780198856566.003.0021openalex-snapshot
Conservation Breeding and Restoration
inferred← citeshttps://doi.org/10.1093/oso/9780198856566.003.0022openalex-snapshot
Genetic Identification
inferred← citeshttps://doi.org/10.1093/oso/9780198856566.003.0023openalex-snapshot
Genetic Monitoring
inferred← citeshttps://doi.org/10.1093/oso/9780198856566.003.0024openalex-snapshot
Conservation Genetics in Practice
inferred← citeshttps://doi.org/10.1093/oso/9780198856566.005.0001openalex-snapshot
Probability, Statistics, and Coding
inferred← citeshttps://doi.org/10.1101/2020.10.11.335174openalex-snapshot
On the potential of Angiosperms353 for population genomics
inferred← citeshttps://doi.org/10.1101/2020.12.29.424770openalex-snapshot
The size of helical pitch is important for microtubule plus end dynamic instability
inferred← citeshttps://doi.org/10.1101/2021.09.06.456727openalex-snapshot
A hybrid capture RNA bait set for resolving genetic and evolutionary relationships in angiosperms from deep phylogeny to intraspecific lineage hybridization
inferred← citeshttps://doi.org/10.1101/2023.04.10.536200openalex-snapshot
Single-Copy Orthologs (SCOs) improve species discrimination: A case study in subgus Jensoa ( Cymbidium )
inferred← citeshttps://doi.org/10.1101/2025.05.12.653369openalex-snapshot
Development and application of a genotyping by target sequencing SNP array panel in Salix suchowensis
inferred← citeshttps://doi.org/10.1101/2025.06.24.661292openalex-snapshot
Unveiling the hidden biodiversity of microbial chemoreceptor genes in the rare biosphere
inferred← citeshttps://doi.org/10.1101/511949openalex-snapshot
Phylogenomics within the Anthonotha clade (Detarioideae, Leguminosae) reveals a high diversity in floral trait shifts and a general trend towards organ number reduction
inferred← citeshttps://doi.org/10.1101/703942openalex-snapshot
orthoCapture: Facilitating Gene Capture Probe Design for Non-Model Species
inferred← citeshttps://doi.org/10.1111/1755-0998.13327openalex-snapshot
A multitiered sequence capture strategy spanning broad evolutionary scales: Application for phylogenetic and phylogeographic studies of orchids
inferred← citeshttps://doi.org/10.1111/1755-0998.13472openalex-snapshot
Using target capture to address conservation challenges: Population‐level tracking of a globally‐traded herbal medicine
inferred← citeshttps://doi.org/10.1111/1755-0998.13806openalex-snapshot
Sequence capture: Obsolete or irreplaceable? A thorough validation across phylogenetic distances and its applicability to hybrids and allopolyploids
inferred← citeshttps://doi.org/10.1111/1755-0998.13833openalex-snapshot
Phylogenomic and syntenic data demonstrate complex evolutionary processes in early radiation of the rosids
inferred← citeshttps://doi.org/10.1111/1755-0998.13920openalex-snapshot
A CRISPR ‐based strategy for targeted sequencing in biodiversity science
inferred← citeshttps://doi.org/10.1111/1755-0998.13986openalex-snapshot
Orchidinae‐205: A new genome‐wide custom bait set for studying the evolution, systematics, and trade of terrestrial orchids
inferred← citeshttps://doi.org/10.1111/cla.12507openalex-snapshot
Benefits of alignment quality‐control processing steps and an Angiosperms353 phylogenomics pipeline applied to the Celastrales
inferred← citeshttps://doi.org/10.1111/cla.12604openalex-snapshot
Revisiting the backbone phylogeny and inferring the evolutionary trends in inflorescence of Elsholtzieae (Lamiaceae): new insights from orthologous nuclear genes
inferred← citeshttps://doi.org/10.1111/cla.70003openalex-snapshot
The family classification of the New Caledonian angiosperms has become more stable with the application of the APG system
inferred← citeshttps://doi.org/10.1111/jipb.13415openalex-snapshot
Phylogenomics and the flowering plant tree of life
inferred← citeshttps://doi.org/10.1111/jipb.13455openalex-snapshot
Genome‐scale angiosperm phylogenies based on nuclear, plastome, and mitochondrial datasets
inferred← citeshttps://doi.org/10.1111/jipb.13499openalex-snapshot
An updated classification for the hyper‐diverse genusCorydalis(Papaveraceae: Fumarioideae) based on phylogenomic and morphological evidence
inferred← citeshttps://doi.org/10.1111/nph.15732openalex-snapshot
Resolving the backbone of the Brassicaceae phylogeny for investigating trait diversity
inferred← citeshttps://doi.org/10.25223/brad.n40.2022.a4openalex-snapshot
Occurrence and phylogeny of the endangered Texas endemic Echinocereus fitchii subsp. albertii
inferred← citeshttps://doi.org/10.3389/fpls.2018.01941openalex-snapshot
Phylogenomics of the Major Tropical Plant Family Annonaceae Using Targeted Enrichment of Nuclear Genes
inferred← citeshttps://doi.org/10.46569/20.500.12680/3197xt779openalex-snapshot
Biogeography of the whorled wattles (Acacia section Lycopodiifoliae) in the Australian Monsoon Tropics
inferred← citeshttps://doi.org/10.53875/capitulum.01.1.04openalex-snapshot
What’s all the hype about HybSeq? A brief history and introduction to target enrichment in Compositae
inferred← citeshttps://doi.org/10.54102/ajt.648b2openalex-snapshot
Anacolosa australis W.E.Cooper (Aptandraceae), a new species from Cape York Peninsula, Queensland
inferred← citeshttps://doi.org/10.70675/38bac37bz8736z4009z995bz26579e2e8f89openalex-snapshot
Phylogeny, biogeography, and breeding system evolution in Moraceae
inferred← citeshttps://doi.org/10.7287/peerj.14525v0.1/reviews/1openalex-snapshot
Peer Review #1 of "A pipeline for assembling low copy nuclear markers from plant genome skimming data for phylogenetic use (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.14525v0.1/reviews/2openalex-snapshot
Peer Review #2 of "A pipeline for assembling low copy nuclear markers from plant genome skimming data for phylogenetic use (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.14525v0.2/reviews/2openalex-snapshot
Peer Review #2 of "A pipeline for assembling low copy nuclear markers from plant genome skimming data for phylogenetic use (v0.2)"
inferred← citeshttps://doi.org/10.7287/peerj.14525v0.3/reviews/2openalex-snapshot
Peer Review #2 of "A pipeline for assembling low copy nuclear markers from plant genome skimming data for phylogenetic use (v0.3)"
Editorial review for independent work. ICSAC — the Institute for Complexity
Science and Advanced Computing — runs a structured editorial panel for researchers
publishing outside journals, and publishes on CiteStamp rails. Submission is free
and goes through ORCID: icsacinstitute.org/submit.