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Low‐coverage, whole‐genome sequencing of Artocarpus camansi (Moraceae) for phylogenetic marker development and gene discovery
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1007/bf02344357openalex-snapshot
Karyomorphology of some Moraceae and Cecropiaceae (Urticales)
inferredcites →https://doi.org/10.1007/bf03050393openalex-snapshot
A contribution to the life-history ofArtocarpus lakoocha Roxb.
inferredcites →https://doi.org/10.1007/s11295-014-0824-zopenalex-snapshot
Diversity in the breadfruit complex (Artocarpus, Moraceae): genetic characterization of critical germplasm
inferredcites →https://doi.org/10.1007/s11295-015-0916-4openalex-snapshot
De novo transcriptome sequencing in Ficus hirta Vahl. (Moraceae) to investigate gene regulation involved in the biosynthesis of pollinator attracting volatiles
inferredcites →https://doi.org/10.1016/j.gene.2014.11.018openalex-snapshot
Genome-wide identification and analysis of the MADS-box gene family in apple
inferredcites →https://doi.org/10.1016/s0022-2836(05)80360-2openalex-snapshot
Basic Local Alignment Search Tool
inferredcites →https://doi.org/10.1016/s1672-0229(07)60007-2openalex-snapshot
KaKs_Calculator: Calculating Ka and Ks Through Model Selection and Model Averaging
inferredcites →https://doi.org/10.1038/ncomms3445openalex-snapshot
Draft genome sequence of the mulberry tree Morus notabilis
inferredcites →https://doi.org/10.1089/cmb.2009.0238openalex-snapshot
Ray: Simultaneous Assembly of Reads from a Mix of High-Throughput Sequencing Technologies
inferredcites →https://doi.org/10.1093/bioinformatics/btl446openalex-snapshot
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
inferredcites →https://doi.org/10.1093/bioinformatics/btn013openalex-snapshot
Using native and syntenically mapped cDNA alignments to improve de novo gene finding
inferredcites →https://doi.org/10.1093/bioinformatics/bts565openalex-snapshot
CD-HIT: accelerated for clustering the next-generation sequencing data
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1093/nar/27.1.29openalex-snapshot
KEGG: Kyoto Encyclopedia of Genes and Genomes
inferredcites →https://doi.org/10.1093/nar/28.1.27openalex-snapshot
KEGG: Kyoto Encyclopedia of Genes and Genomes
inferredcites →https://doi.org/10.1093/nar/gkl315openalex-snapshot
PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments
inferredcites →https://doi.org/10.1093/nar/gkr1090openalex-snapshot
The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040153openalex-snapshot
A codon-based model of nucleotide substitution for protein-coding DNA sequences.
inferredcites →https://doi.org/10.1186/1471-2105-12-124openalex-snapshot
Proteinortho: Detection of (Co-)orthologs in large-scale analysis
inferredcites →https://doi.org/10.1186/1471-2164-12-211openalex-snapshot
Building a model: developing genomic resources for common milkweed (Asclepias syriaca) with low coverage genome sequencing
inferredcites →https://doi.org/10.1186/1471-2164-14-465openalex-snapshot
Assessing De Novo transcriptome assembly metrics for consistency and utility
inferredcites →https://doi.org/10.1186/1471-2164-14-604openalex-snapshot
L_RNA_scaffolder: scaffolding genomes with transcripts
inferredcites →https://doi.org/10.1186/gb-2011-12-10-r102openalex-snapshot
The draft genome and transcriptome of Cannabis sativa
inferredcites →https://doi.org/10.1600/0363644054782134openalex-snapshot
Systematics and Species Limits of Breadfruit (Artocarpus, Moraceae)
inferredcites →https://doi.org/10.1600/036364410x539853openalex-snapshot
Phylogeny and Recircumscription of Artocarpeae (Moraceae) with a Focus on Artocarpus
inferredcites →https://doi.org/10.17348/era.9.0.129-149openalex-snapshot
Beyond the Bounty: Breadfruit (Artocarpus altilis) for food security and novel foods in the 21st Century
inferredcites →https://doi.org/10.2307/2657070openalex-snapshot
Chromosome numbers and pollen stainability of three species of Pacific Island breadfruit (Artocarpus, Moraceae)
inferredcites →https://doi.org/10.3732/apps.1200423openalex-snapshot
Development of microsatellite loci in Artocarpus altilis (Moraceae) and cross‐amplification in congeneric species
inferredcites →https://doi.org/10.3732/apps.1400042openalex-snapshot
Hyb‐Seq: Combining target enrichment and genome skimming for plant phylogenomics
inferredcites →https://doi.org/10.3732/apps.1400044openalex-snapshot
Gene prediction and annotation in Penstemon (Plantaginaceae): A workflow for marker development from extremely low‐coverage genome sequencing
inferredcites →https://doi.org/10.3732/apps.1500049openalex-snapshot
Chloroplast microsatellite markers for Artocarpus (Moraceae) developed from transcriptome sequences
inferredcites →https://doi.org/10.3732/apps.1600016openalex-snapshot
HybPiper: Extracting coding sequence and introns for phylogenetics from high‐throughput sequencing reads using target enrichment
inferredcites →https://doi.org/10.3732/apps.1600017openalex-snapshot
Low‐coverage, whole‐genome sequencing of Artocarpus camansi (Moraceae) for phylogenetic marker development and gene discovery
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.11646/phytotaxa.388.4.1zenodo-depositor-declared
Delimitation of the new tribe Parartocarpeae (Moraceae) is supported by a 333-gene phylogeny and resolves tribal level Moraceae taxonomy
inferred← citeshttps://doi.org/10.1002/ajb2.1068openalex-snapshot
Allele phasing has minimal impact on phylogenetic reconstruction from targeted nuclear gene sequences in a case study of Artocarpus
inferred← citeshttps://doi.org/10.1002/ajb2.1095openalex-snapshot
A transcriptome screen for positive selection in domesticated breadfruit and its wild relatives (Artocarpus spp.)
inferred← citeshttps://doi.org/10.1002/aps3.1038openalex-snapshot
Practical considerations for plant phylogenomics
inferred← citeshttps://doi.org/10.1002/aps3.11295openalex-snapshot
An empirical assessment of a single family‐wide hybrid capture locus set at multiple evolutionary timescales in Asteraceae
inferred← citeshttps://doi.org/10.1002/aps3.11337openalex-snapshot
Strategies for reducing per‐sample costs in target capture sequencing for phylogenomics and population genomics in plants
inferred← citeshttps://doi.org/10.1002/aps3.11443openalex-snapshot
Exploring Angiosperms353: Developing and applying a universal toolkit for flowering plant phylogenomics
inferred← citeshttps://doi.org/10.1002/tax.12503openalex-snapshot
Phylogenomics of Brosimum (Moraceae) and allied genera, including a revised subgeneric system
inferred← citeshttps://doi.org/10.1002/tax.12526openalex-snapshot
Repeated parallel losses of inflexed stamens in Moraceae: Phylogenomics and generic revision of the tribe Moreae and the reinstatement of the tribe Olmedieae (Moraceae)
inferred← citeshttps://doi.org/10.1016/j.cub.2022.12.001openalex-snapshot
Linking breadfruit cultivar names across the globe connects histories after 230 years of separation
inferred← citeshttps://doi.org/10.1016/j.ecolind.2021.108143openalex-snapshot
Development of genic-SSR markers and their application in revealing genetic diversity and population structure in an Eastern and North-Eastern Indian collection of Jack (Artocarpus heterophyllus Lam.)
inferred← citeshttps://doi.org/10.1016/j.tplants.2017.08.004openalex-snapshot
Challenges towards Revitalizing Hemp: A Multifaceted Crop
inferred← citeshttps://doi.org/10.1016/j.ympev.2023.107837openalex-snapshot
Phylogenomic analyses of the Neotropical Artocarpeae (Moraceae) reveal a history of introgression and support the reinstatement of Acanthinophyllum
inferred← citeshttps://doi.org/10.1038/s41438-019-0195-6openalex-snapshot
Genome sequences of horticultural plants: past, present, and future
inferred← citeshttps://doi.org/10.1073/pnas.2222035120openalex-snapshot
Echoes of ancient introgression punctuate stable genomic lineages in the evolution of figs
inferred← citeshttps://doi.org/10.1093/aob/mcae030openalex-snapshot
Divergence and reticulation in the Mexican white oaks: ecological and phylogenomic evidence on species limits and phylogenetic networks in the Quercus laeta complex (Fagaceae)
inferred← citeshttps://doi.org/10.1093/sysbio/syaa073openalex-snapshot
Paralogs and Off-Target Sequences Improve Phylogenetic Resolution in a Densely Sampled Study of the Breadfruit Genus ( Artocarpus , Moraceae)
inferred← citeshttps://doi.org/10.1093/sysbio/syab032openalex-snapshot
Analysis of Paralogs in Target Enrichment Data Pinpoints Multiple Ancient Polyploidy Events in Alchemilla s.l. (Rosaceae)
inferred← citeshttps://doi.org/10.1093/sysbio/syy086openalex-snapshot
A Universal Probe Set for Targeted Sequencing of 353 Nuclear Genes from Any Flowering Plant Designed Using k-Medoids Clustering
inferred← citeshttps://doi.org/10.1101/2024.06.22.600207openalex-snapshot
Short steps can take you far: Phylogenetic analysis of Australasian Cheilanthes distans reveals frequent shorter-range dispersal
inferred← citeshttps://doi.org/10.1101/361618openalex-snapshot
A Universal Probe Set for Targeted Sequencing of 353 Nuclear Genes from Any Flowering Plant Designed Using k-medoids Clustering
inferred← citeshttps://doi.org/10.1101/531855openalex-snapshot
Long-distance dispersal shaped the diversity of tribe Dorstenieae (Moraceae)
inferred← citeshttps://doi.org/10.1111/1755-0998.12605openalex-snapshot
Development of genomic tools in a widespread tropical tree, Symphonia globulifera L.f.: a new low‐coverage draft genome, SNP and SSR markers
inferred← citeshttps://doi.org/10.1111/nph.15099openalex-snapshot
Phylogenomic analyses reveal a deep history of hybridization and polyploidy in the Neotropical genus Lachemilla (Rosaceae)
inferred← citeshttps://doi.org/10.1111/nph.15312openalex-snapshot
Bridging the micro‐ and macroevolutionary levels in phylogenomics: Hyb‐Seq solves relationships from populations to species and above
inferred← citeshttps://doi.org/10.1371/journal.pone.0272680openalex-snapshot
Amis Pacilo and Yami Cipoho are not the same as the Pacific breadfruit starch crop—Target enrichment phylogenomics of a long-misidentified Artocarpus species sheds light on the northward Austronesian migration from the Philippines to Taiwan
inferred← citeshttps://doi.org/10.1640/0002-8444-113.3.191openalex-snapshot
Resolving Deep Relationships and Revealing Ancient Whole-Genome Duplications in Pteridaceae using Transcriptomic Data
inferred← citeshttps://doi.org/10.21203/rs.3.rs-607740/v1openalex-snapshot
Optimizing Genomic Selection in Dezhou Donkey Using Low Coverage Whole Genome Sequencing
inferred← citeshttps://doi.org/10.26492/gbs72(2).2020-06openalex-snapshot
Taxonomic updates to Artocarpus subgenus Pseudojaca (Moraceae), with a particular focus on the taxa in Singapore
inferred← citeshttps://doi.org/10.3389/fpls.2022.1044420openalex-snapshot
Whole-genome sequencing of a year-round fruiting jackfruit (Artocarpus heterophyllus Lam.) reveals high levels of single nucleotide variation
inferred← citeshttps://doi.org/10.3390/f11111179openalex-snapshot
The Complete Plastid Genome of Artocarpus camansi: A High Degree of Conservation of the Plastome Structure in the Family Moraceae
inferred← citeshttps://doi.org/10.3390/genes11010027openalex-snapshot
Draft Genomes of Two Artocarpus Plants, Jackfruit (A. heterophyllus) and Breadfruit (A. altilis)
inferred← citeshttps://doi.org/10.3390/genes15040454openalex-snapshot
Marker Density and Models to Improve the Accuracy of Genomic Selection for Growth and Slaughter Traits in Meat Rabbits
inferred← citeshttps://doi.org/10.3390/genes17010091openalex-snapshot
ArGD: An Integrated Database and Analysis Platform for Artocarpus Genomics and Transcriptomics
inferred← citeshttps://doi.org/10.3390/horticulturae8050453openalex-snapshot
Characterisation of the Complete Chloroplast Genomes of Seven Hyacinthus orientalis L. Cultivars: Insights into Cultivar Phylogeny
inferred← citeshttps://doi.org/10.3732/apps.1600016openalex-snapshot
HybPiper: Extracting coding sequence and introns for phylogenetics from high‐throughput sequencing reads using target enrichment
inferred← citeshttps://doi.org/10.70675/38bac37bz8736z4009z995bz26579e2e8f89openalex-snapshot
Phylogeny, biogeography, and breeding system evolution in Moraceae
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