On the public citation graph

Cicada endosymbionts contain tRNAs that are processed despite having genomes that lack tRNA processing activities

https://doi.org/10.1101/365791
0 signed · 97 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/j.1460-2075.1987.tb02528.xopenalex-snapshot
tRNA nucleotidyltransferase is not essential for Escherichia coli viability.
inferredcites →https://doi.org/10.1002/wrna.1144openalex-snapshot
Transfer RNA modifications: nature's combinatorial chemistry playground
inferredcites →https://doi.org/10.1006/bbrc.2001.5303openalex-snapshot
The Chloroplast-Derived trnW and trnM-e Genes Are Not Expressed in Arabidopsis Mitochondria
inferredcites →https://doi.org/10.1007/4735_2007_0223openalex-snapshot
Structure, function, and inheritance of plastid genomes
inferredcites →https://doi.org/10.1007/978-3-540-75376-6openalex-snapshot
Cell and Molecular Biology of Plastids
inferredcites →https://doi.org/10.1007/s00239-011-9470-3openalex-snapshot
Unassigned Codons, Nonsense Suppression, and Anticodon Modifications in the Evolution of the Genetic Code
inferredcites →https://doi.org/10.1007/s00294-008-0223-9openalex-snapshot
Import of tRNAs and aminoacyl-tRNA synthetases into mitochondria
inferredcites →https://doi.org/10.1016/0092-8674(83)90117-4openalex-snapshot
The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme
inferredcites →https://doi.org/10.1016/j.ceb.2016.05.008openalex-snapshot
From microbiology to cell biology: when an intracellular bacterium becomes part of its host cell
inferredcites →https://doi.org/10.1016/j.cell.2009.07.001openalex-snapshot
Stressing Out over tRNA Cleavage
inferredcites →https://doi.org/10.1016/j.cell.2013.05.040openalex-snapshot
Horizontal Gene Transfer from Diverse Bacteria to an Insect Genome Enables a Tripartite Nested Mealybug Symbiosis
inferredcites →https://doi.org/10.1016/j.cub.2011.06.051openalex-snapshot
An Interdependent Metabolic Patchwork in the Nested Symbiosis of Mealybugs
inferredcites →https://doi.org/10.1016/j.cub.2014.06.038openalex-snapshot
Aphid gene of bacterial origin encodes a protein transported to an obligate endosymbiont
inferredcites →https://doi.org/10.1016/j.cub.2017.08.010openalex-snapshot
Massive Protein Import into the Early-Evolutionary-Stage Photosynthetic Organelle of the Amoeba Paulinella chromatophora
inferredcites →https://doi.org/10.1016/j.cub.2017.10.008openalex-snapshot
Idiosyncratic Genome Degradation in a Bacterial Endosymbiont of Periodical Cicadas
inferredcites →https://doi.org/10.1016/j.mib.2007.05.008openalex-snapshot
Maturation and degradation of RNA in bacteria
inferredcites →https://doi.org/10.1016/j.mib.2009.12.002openalex-snapshot
The bacterial essence of tiny symbiont genomes
inferredcites →https://doi.org/10.1016/j.tibs.2006.04.007openalex-snapshot
RNase P: interface of the RNA and protein worlds
inferredcites →https://doi.org/10.1016/j.tibs.2008.04.010openalex-snapshot
Recent advances in tRNA mitochondrial import
inferredcites →https://doi.org/10.1016/s0021-9258(17)30645-2openalex-snapshot
The mitochondrial tRNAs of Trypanosoma brucei are nuclear encoded.
inferredcites →https://doi.org/10.1016/s0079-6603(08)60628-5openalex-snapshot
Ribonucleases, ?RNA Nucleotidyltransferase, and the 3' Processing of ?RNA
inferredcites →https://doi.org/10.1038/embor.2008.101openalex-snapshot
Transfer RNA genes in pieces
inferredcites →https://doi.org/10.1038/nature06833openalex-snapshot
Life without RNase P
inferredcites →https://doi.org/10.1038/nbt.1883openalex-snapshot
Full-length transcriptome assembly from RNA-Seq data without a reference genome
inferredcites →https://doi.org/10.1038/nmeth.3478openalex-snapshot
Efficient and quantitative high-throughput tRNA sequencing
inferredcites →https://doi.org/10.1038/nmeth.3508openalex-snapshot
ARM-seq: AlkB-facilitated RNA methylation sequencing reveals a complex landscape of modified tRNA fragments
inferredcites →https://doi.org/10.1038/nrg1271openalex-snapshot
Endosymbiotic gene transfer: organelle genomes forge eukaryotic chromosomes
inferredcites →https://doi.org/10.1038/nrg2798openalex-snapshot
Evolutionary microbial genomics: insights into bacterial host adaptation
inferredcites →https://doi.org/10.1038/nrmicro2670openalex-snapshot
Extreme genome reduction in symbiotic bacteria
inferredcites →https://doi.org/10.1073/pnas.082682699openalex-snapshot
A Los1p-independent pathway for nuclear export of intronless tRNAs in Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1073/pnas.1118800109openalex-snapshot
Trafficking of protein into the recently established photosynthetic organelles of Paulinella chromatophora
inferredcites →https://doi.org/10.1073/pnas.1421385112openalex-snapshot
Endosymbiotic gene transfer from prokaryotic pangenomes: Inherited chimerism in eukaryotes
inferredcites →https://doi.org/10.1073/pnas.1603910113openalex-snapshot
Repeated replacement of an intrabacterial symbiont in the tripartite nested mealybug symbiosis
inferredcites →https://doi.org/10.1073/pnas.1608016113openalex-snapshot
Gene transfers from diverse bacteria compensate for reductive genome evolution in the chromatophore of Paulinella chromatophora
inferredcites →https://doi.org/10.1073/pnas.1712321115openalex-snapshot
Multiple origins of interdependent endosymbiotic complexes in a genus of cicadas
inferredcites →https://doi.org/10.1073/pnas.1803245115openalex-snapshot
Recurrent symbiont recruitment from fungal parasites in cicadas
inferredcites →https://doi.org/10.1073/pnas.84.5.1324openalex-snapshot
Bizarre tRNAs inferred from DNA sequences of mitochondrial genomes of nematode worms.
inferredcites →https://doi.org/10.1073/pnas.97.14.7778openalex-snapshot
tmRNAs that encode proteolysis-inducing tags are found in all known bacterial genomes: A two-piece tmRNA functions in Caulobacter
inferredcites →https://doi.org/10.1074/jbc.m106202200openalex-snapshot
Identification and Characterization of Mammalian Mitochondrial tRNA nucleotidyltransferases
inferredcites →https://doi.org/10.1074/jbc.m404519200openalex-snapshot
Mitochondrial tRNA Import in Toxoplasma gondii
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btp616openalex-snapshot
edgeR : a Bioconductor package for differential expression analysis of digital gene expression data
inferredcites →https://doi.org/10.1093/gbe/evt008openalex-snapshot
Strikingly Bacteria-Like and Gene-Rich Mitochondrial Genomes throughout Jakobid Protists
inferredcites →https://doi.org/10.1093/gbe/evt181openalex-snapshot
Massively Convergent Evolution for Ribosomal Protein Gene Content in Plastid and Mitochondrial Genomes
inferredcites →https://doi.org/10.1093/gbe/evt210openalex-snapshot
Genome Degeneration and Adaptation in a Nascent Stage of Symbiosis
inferredcites →https://doi.org/10.1093/gbe/evu133openalex-snapshot
Settling Down: The Genome of Serratia symbiotica from the Aphid Cinara tujafilina Zooms in on the Process of Accommodation to a Cooperative Intracellular Life
inferredcites →https://doi.org/10.1093/gbe/evv159openalex-snapshot
Lineage-Specific Patterns of Genome Deterioration in Obligate Symbionts of Sharpshooter Leafhoppers
inferredcites →https://doi.org/10.1093/gbe/evv170openalex-snapshot
Metabolic Coevolution in the Bacterial Symbiosis of Whiteflies and Related Plant Sap-Feeding Insects
inferredcites →https://doi.org/10.1093/genetics/150.1.425openalex-snapshot
A Subset of Conserved tRNA Genes in Plastid DNA of Nongreen Plants
inferredcites →https://doi.org/10.1093/jxb/erm267openalex-snapshot
Dual targeting of the tRNA nucleotidyltransferase in plants: not just the signal
inferredcites →https://doi.org/10.1093/molbev/msg167openalex-snapshot
Increased Rates of Sequence Evolution in Endosymbiotic Bacteria and Fungi with Small Effective Population Sizes
inferredcites →https://doi.org/10.1093/molbev/msr028openalex-snapshot
Rampant Gene Loss in the Underground Orchid Rhizanthella gardneri Highlights Evolutionary Constraints on Plastid Genomes
inferredcites →https://doi.org/10.1093/molbev/mss180openalex-snapshot
Genome Reduction and Co-evolution between the Primary and Secondary Bacterial Symbionts of Psyllids
inferredcites →https://doi.org/10.1093/molbev/msu004openalex-snapshot
Parallel Histories of Horizontal Gene Transfer Facilitated Extreme Reduction of Endosymbiont Genomes in Sap-Feeding Insects
inferredcites →https://doi.org/10.1093/nar/22.12.2183openalex-snapshot
Summary: the modified nucleosides of RNA
inferredcites →https://doi.org/10.1093/nar/25.5.0955openalex-snapshot
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
inferredcites →https://doi.org/10.1093/nar/4.12.4165openalex-snapshot
End labeling of enzymatically decapped mRNA
inferredcites →https://doi.org/10.1093/nar/8.22.5213openalex-snapshot
A mammalian mitochondrial serine transfer RNA lacking the “dihydrouridine” loop and stem
inferredcites →https://doi.org/10.1093/nar/gkh152openalex-snapshot
ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences
inferredcites →https://doi.org/10.1093/nar/gkj084openalex-snapshot
MODOMICS: a database of RNA modification pathways
inferredcites →https://doi.org/10.1093/nar/gkm1096openalex-snapshot
Developmentally regulated cleavage of tRNAs in the bacterium Streptomyces coelicolor
inferredcites →https://doi.org/10.1093/nar/gkn188openalex-snapshot
The Vienna RNA Websuite
inferredcites →https://doi.org/10.1093/nar/gkp093openalex-snapshot
Meta-analysis of small RNA-sequencing errors reveals ubiquitous post-transcriptional RNA modifications
inferredcites →https://doi.org/10.1093/nar/gkr450openalex-snapshot
RNA degradome--its biogenesis and functions
inferredcites →https://doi.org/10.1093/nar/gks503openalex-snapshot
Altered tRNA characteristics and 3′ maturation in bacterial symbionts with reduced genomes
inferredcites →https://doi.org/10.1093/nar/gkx103openalex-snapshot
tRNA-derived small RNAs target transposable element transcripts
inferredcites →https://doi.org/10.1101/cshperspect.a011403openalex-snapshot
Mitochondrial Evolution
inferredcites →https://doi.org/10.1101/gad.1956510openalex-snapshot
tRNA biology charges to the front
inferredcites →https://doi.org/10.1101/gr.9.9.868openalex-snapshot
CAP3: A DNA Sequence Assembly Program
inferredcites →https://doi.org/10.1111/j.1742-4658.2009.06874.xopenalex-snapshot
Protein transport in organelles: The composition, function and regulation of the Tic complex in chloroplast protein import
inferredcites →https://doi.org/10.1111/nyas.12740openalex-snapshot
Endosymbiont evolution: predictions from theory and surprises from genomes
inferredcites →https://doi.org/10.1126/science.1071278openalex-snapshot
50 Million Years of Genomic Stasis in Endosymbiotic Bacteria
inferredcites →https://doi.org/10.1126/science.1145718openalex-snapshot
Permuted tRNA Genes Expressed via a Circular RNA Intermediate in Cyanidioschyzon merolae
inferredcites →https://doi.org/10.1126/science.aaa9605openalex-snapshot
Evolving new organisms via symbiosis
inferredcites →https://doi.org/10.1128/9781555818333openalex-snapshot
tRNA
inferredcites →https://doi.org/10.1128/aem.00291-10openalex-snapshot
Chromosome Stability and Gene Loss in Cockroach Endosymbionts
inferredcites →https://doi.org/10.1128/jb.00097-13openalex-snapshot
Multiple Roles of RNase Y in Streptococcus pyogenes mRNA Processing and Degradation
inferredcites →https://doi.org/10.1128/jb.05749-11openalex-snapshot
Complete Genome Sequence of “Candidatus Tremblaya princeps” Strain PCVAL, an Intriguing Translational Machine below the Living-Cell Status
inferredcites →https://doi.org/10.1128/mmbr.56.1.229-264.1992openalex-snapshot
Recent evidence for evolution of the genetic code.
inferredcites →https://doi.org/10.1146/annurev-genet-110410-132531openalex-snapshot
Human Mitochondrial tRNAs: Biogenesis, Function, Structural Aspects, and Diseases
inferredcites →https://doi.org/10.1146/annurev-micro-091213-112901openalex-snapshot
The Tiniest Tiny Genomes
inferredcites →https://doi.org/10.1146/annurev.micro.62.081307.162948openalex-snapshot
Biology of trans-Translation
inferredcites →https://doi.org/10.1186/1471-2164-10-155openalex-snapshot
Bioinformatics analysis suggests base modifications of tRNAs and miRNAs in Arabidopsis thaliana
inferredcites →https://doi.org/10.1186/1471-2164-10-598openalex-snapshot
Improved tRNA prediction in the American house dust mite reveals widespread occurrence of extremely short minimal tRNAs in acariform mites
inferredcites →https://doi.org/10.1186/1471-2164-7-297openalex-snapshot
Comparative analysis of dinoflagellate chloroplast genomes reveals rRNA and tRNA genes
inferredcites →https://doi.org/10.1186/gb-2009-10-3-r25openalex-snapshot
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
inferredcites →https://doi.org/10.1186/s12862-016-0820-zopenalex-snapshot
Development of a toolbox to dissect host-endosymbiont interactions and protein trafficking in the trypanosomatid Angomonas deanei
inferredcites →https://doi.org/10.1371/journal.pgen.1000565openalex-snapshot
Origin of an Alternative Genetic Code in the Extremely Small and GC–Rich Genome of a Bacterial Symbiont
inferredcites →https://doi.org/10.1371/journal.pgen.1000827openalex-snapshot
Bacterial Genes in the Aphid Genome: Absence of Functional Gene Transfer from Buchnera to Its Host
inferredcites →https://doi.org/10.1515/bc.2009.101openalex-snapshot
Mitochondrial tRNA import – the challenge to understand has just begun
inferredcites →https://doi.org/10.1515/bc.2011.043openalex-snapshot
Traces of post-transcriptional RNA modifications in deep sequencing data
inferredcites →https://doi.org/10.3389/fgene.2014.00109openalex-snapshot
Losing the stem-loop structure from metazoan mitochondrial tRNAs and co-evolution of interacting factors
inferredcites →https://doi.org/10.3389/fmicb.2014.00113openalex-snapshot
Trans-translation exposed: understanding the structures and functions of tmRNA-SmpB
inferredcites →https://doi.org/10.3389/fmicb.2014.00421openalex-snapshot
Ends of the line for tmRNA-SmpB
inferredcites →https://doi.org/10.3390/ijms16034518openalex-snapshot
tRNA Biology in Mitochondria
inferredcites →https://doi.org/10.4161/rna.27799openalex-snapshot
Organelle evolution, fragmented rRNAs, and Carl

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1073/pnas.1811932115openalex-snapshot
Evolution of host support for two ancient bacterial symbionts with differentially degraded genomes in a leafhopper host
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.