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Natural variation in C. elegans arsenic toxicity is explained by differences in branched chain amino acid metabolism

https://doi.org/10.1101/373787
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/0471142905.hg1011s57openalex-snapshot
The Catalogue of Somatic Mutations in Cancer (COSMIC)
inferredcites →https://doi.org/10.1002/9781444308785openalex-snapshot
Arsenic Pollution
inferredcites →https://doi.org/10.1002/jat.1492openalex-snapshot
Genetic association between intronic variants in AS3MT and arsenic methylation efficiency is focused on a large linkage disequilibrium cluster in chromosome 10
inferredcites →https://doi.org/10.1007/978-981-10-3332-2_13openalex-snapshot
Arsenic Trioxide: Clinical Pharmacology and Therapeutic Results
inferredcites →https://doi.org/10.1007/s00128-017-2042-5openalex-snapshot
Joint Toxicity of Arsenic, Copper and Glyphosate on Behavior, Reproduction and Heat Shock Protein Response in Caenorhabditis elegans
inferredcites →https://doi.org/10.1007/s00726-017-2412-7openalex-snapshot
Enzymes involved in branched-chain amino acid metabolism in humans
inferredcites →https://doi.org/10.1007/s00775-018-1537-9openalex-snapshot
Arsenic trioxide: insights into its evolution to an anticancer agent
inferredcites →https://doi.org/10.1007/s10552-009-9413-0openalex-snapshot
Polymorphisms in arsenic metabolism genes, urinary arsenic methylation profile and cancer
inferredcites →https://doi.org/10.1007/s12185-013-1354-4openalex-snapshot
Mechanisms of action and resistance to all-trans retinoic acid (ATRA) and arsenic trioxide (As2O3) in acute promyelocytic leukemia
inferredcites →https://doi.org/10.1016/j.cell.2013.02.050openalex-snapshot
Integration of Metabolic and Gene Regulatory Networks Modulates the C. elegans Dietary Response
inferredcites →https://doi.org/10.1016/j.cell.2017.03.046openalex-snapshot
Bacterial Metabolism Affects the C. elegans Response to Cancer Chemotherapeutics
inferredcites →https://doi.org/10.1016/j.dnarep.2017.02.005openalex-snapshot
Effects of methyl and inorganic mercury exposure on genome homeostasis and mitochondrial function in Caenorhabditis elegans
inferredcites →https://doi.org/10.1016/j.gde.2017.08.002openalex-snapshot
Natural diversity facilitates the discovery of conserved chemotherapeutic response mechanisms
inferredcites →https://doi.org/10.1016/j.jorganchem.2008.12.028openalex-snapshot
Inhibition by methylated organoarsenicals of the respiratory 2-oxo-acid dehydrogenases
inferredcites →https://doi.org/10.1016/j.mito.2016.08.014openalex-snapshot
Effects of reduced mitochondrial DNA content on secondary mitochondrial toxicant exposure in Caenorhabditis elegans
inferredcites →https://doi.org/10.1016/j.oraloncology.2004.01.011openalex-snapshot
Fatty acid synthase is required for the proliferation of human oral squamous carcinoma cells
inferredcites →https://doi.org/10.1016/j.taap.2008.09.026openalex-snapshot
Ethnic differences in five intronic polymorphisms associated with arsenic metabolism within human arsenic (+ 3 oxidation state) methyltransferase (AS3MT) gene
inferredcites →https://doi.org/10.1016/j.tox.2017.05.018openalex-snapshot
Deficiencies in mitochondrial dynamics sensitize Caenorhabditis elegans to arsenite and other mitochondrial toxicants by reducing mitochondrial adaptability
inferredcites →https://doi.org/10.1016/s0021-9258(19)38795-2openalex-snapshot
Structure-function relationships in dihydrolipoamide acyltransferases.
inferredcites →https://doi.org/10.1016/s0039-9140(02)00268-0openalex-snapshot
Arsenic round the world: a review
inferredcites →https://doi.org/10.1017/s0016672300014634openalex-snapshot
The hitch-hiking effect of a favourable gene
inferredcites →https://doi.org/10.1021/acs.chemrestox.7b00113openalex-snapshot
Nonsynonymous Polymorphisms in the Human AS3MT Arsenic Methylation Gene: Implications for Arsenic Toxicity
inferredcites →https://doi.org/10.1021/bi00293a011openalex-snapshot
Identification of specific subunits of highly purified bovine liver branched-chain ketoacid dehydrogenase
inferredcites →https://doi.org/10.1021/cr300015copenalex-snapshot
Arsenic Binding to Proteins
inferredcites →https://doi.org/10.1021/jacs.7b11811openalex-snapshot
Metabolomic “Dark Matter” Dependent on Peroxisomal β-Oxidation in Caenorhabditis elegans
inferredcites →https://doi.org/10.1038/347558a0openalex-snapshot
The t(15;17) translocation of acute promyelocytic leukaemia fuses the retinoic acid receptor α gene to a novel transcribed locus
inferredcites →https://doi.org/10.1038/bcj.2015.25openalex-snapshot
Acute promyelocytic leukemia: where did we start, where are we now, and the future
inferredcites →https://doi.org/10.1038/ncomms9712openalex-snapshot
Genetic interactions contribute less than additive effects to quantitative trait variation in yeast
inferredcites →https://doi.org/10.1038/ng.1050openalex-snapshot
Chromosome-scale selective sweeps shape Caenorhabditis elegans genomic diversity
inferredcites →https://doi.org/10.1038/nm.3217openalex-snapshot
BCAT1 promotes cell proliferation through amino acid catabolism in gliomas carrying wild-type IDH1
inferredcites →https://doi.org/10.1038/sj.emboj.7600663openalex-snapshot
Crystal structure of pyruvate dehydrogenase kinase 3 bound to lipoyl domain 2 of human pyruvate dehydrogenase complex
inferredcites →https://doi.org/10.1038/sj.hdy.6800717openalex-snapshot
Adjusting multiple testing in multilocus analyses using the eigenvalues of a correlation matrix
inferredcites →https://doi.org/10.1039/c3mt00328kopenalex-snapshot
Arsenic-induced promoter hypomethylation and over-expression of ERCC2 reduces DNA repair capacity in humans by non-disjunction of the ERCC2–Cdk7 complex
inferredcites →https://doi.org/10.1042/bj2570625openalex-snapshot
The 2-oxo acid dehydrogenase complexes: recent advances
inferredcites →https://doi.org/10.1073/pnas.75.10.4881openalex-snapshot
Purification and characterization of branched chain α-keto acid dehydrogenase complex of bovine kidney
inferredcites →https://doi.org/10.1074/jbc.m115.676650openalex-snapshot
Developmental Defects of Caenorhabditis elegans Lacking Branched-chain α-Ketoacid Dehydrogenase Are Mainly Caused by Monomethyl Branched-chain Fatty Acid Deficiency
inferredcites →https://doi.org/10.1074/jbc.m800965200openalex-snapshot
LET-767 Is Required for the Production of Branched Chain and Long Chain Fatty Acids in Caenorhabditis elegans
inferredcites →https://doi.org/10.1086/519795openalex-snapshot
PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses
inferredcites →https://doi.org/10.1093/bioinformatics/btg112openalex-snapshot
R/qtl: QTL mapping in experimental crosses
inferredcites →https://doi.org/10.1093/bioinformatics/btr509openalex-snapshot
A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
inferredcites →https://doi.org/10.1093/carcin/22.5.701openalex-snapshot
Fatty acid regulates gene expression and growth of human prostate cancer PC-3 cells
inferredcites →https://doi.org/10.1093/genetics/146.1.149openalex-snapshot
Natural Variation and Copulatory Plug Formation in Caenorhabditis elegans
inferredcites →https://doi.org/10.1093/hmg/ddu123openalex-snapshot
Branched-chain amino acid metabolism: from rare Mendelian diseases to more common disorders
inferredcites →https://doi.org/10.1093/molbev/msv046openalex-snapshot
Human Adaptation to Arsenic-Rich Environments
inferredcites →https://doi.org/10.1093/nar/gkw893openalex-snapshot
CeNDR, the Caenorhabditis elegans natural diversity resource
inferredcites →https://doi.org/10.1093/toxsci/kfw093openalex-snapshot
From the Cover: Arsenite Uncouples Mitochondrial Respiration and Induces a Warburg-like Effect inCaenorhabditis elegans
inferredcites →https://doi.org/10.1101/325399openalex-snapshot
Common genomic regions underlie natural variation in diverse toxin responses
inferredcites →https://doi.org/10.1101/gad.1692008openalex-snapshot
A branched-chain fatty acid is involved in post-embryonic growth control in parallel to the insulin receptor pathway and its biosynthesis is feedback-regulated in C. elegans
inferredcites →https://doi.org/10.1111/acel.12076openalex-snapshot
Mitochondrial hormesis links low‐dose arsenite exposure to lifespan extension
inferredcites →https://doi.org/10.1126/science.1183424openalex-snapshot
Arsenic Trioxide Controls the Fate of the PML-RARα Oncoprotein by Directly Binding PML
inferredcites →https://doi.org/10.1136/pmj.79.933.391openalex-snapshot
Acute and chronic arsenic toxicity
inferredcites →https://doi.org/10.1158/1078-0432.ccr-13-2725openalex-snapshot
New Strategies in Acute Promyelocytic Leukemia: Moving to an Entirely Oral, Chemotherapy-Free Upfront Management Approach
inferredcites →https://doi.org/10.1182/blood.v96.4.1531openalex-snapshot
PML/RARα fusion protein expression in normal human hematopoietic progenitors dictates myeloid commitment and the promyelocytic phenotype
inferredcites →https://doi.org/10.1186/s13742-015-0047-8openalex-snapshot
Second-generation PLINK: rising to the challenge of larger and richer datasets
inferredcites →https://doi.org/10.1289/ehp.021100767openalex-snapshot
Influence of nutrient intake on blood lead levels of young children at risk for lead poisoning.
inferredcites →https://doi.org/10.1371/journal.pbio.0020257openalex-snapshot
Monomethyl Branched-Chain Fatty Acids Play an Essential Role in Caenorhabditis elegans Development
inferredcites →https://doi.org/10.1371/journal.pgen.1006219openalex-snapshot
Selection on a Subunit of the NURF Chromatin Remodeler Modifies Life History Traits in a Domesticated Strain of Caenorhabditis elegans
inferredcites →https://doi.org/10.1371/journal.pgen.1006891openalex-snapshot
Natural variation in a single amino acid substitution underlies physiological responses to topoisomerase II poisons
inferredcites →https://doi.org/10.1371/journal.pone.0045293openalex-snapshot
Estimating Additive and Non-Additive Genetic Variances and Predicting Genetic Merits Using Genome-Wide Dense Single Nucleotide Polymorphism Markers
inferredcites →https://doi.org/10.1371/journal.pone.0111090openalex-snapshot
COPASutils: An R Package for Reading, Processing, and Visualizing Data from COPAS Large-Particle Flow Cytometers
inferredcites →https://doi.org/10.1371/journal.pone.0156744openalex-snapshot
Genome-Assisted Prediction of Quantitative Traits Using the R Package sommer
inferredcites →https://doi.org/10.1534/g3.112.004259openalex-snapshot
Shrinkage Estimation of the Realized Relationship Matrix
inferredcites →https://doi.org/10.1534/g3.115.017178openalex-snapshot
A Powerful New Quantitative Genetics Platform, Combining Caenorhabditis elegans High-Throughput Fitness Assays with a Large Collection of Recombinant Strains
inferredcites →https://doi.org/10.1534/genetics.113.150847openalex-snapshot
To Grow or Not to Grow: Nutritional Control of Development DuringCaenorhabditis elegansL1 Arrest
inferredcites →https://doi.org/10.1534/genetics.114.166389openalex-snapshot
A Co-CRISPR Strategy for Efficient Genome Editing in Caenorhabditis elegans
inferredcites →https://doi.org/10.1534/genetics.115.175950openalex-snapshot
Remarkably Divergent Regions Punctuate the Genome Assembly of the Caenorhabditis elegans Hawaiian Strain CB4856
inferredcites →https://doi.org/10.1534/genetics.115.179382openalex-snapshot
High Efficiency, Homology-Directed Genome Editing in Caenorhabditis elegans Using CRISPR-Cas9 Ribonucleoprotein Complexes
inferredcites →https://doi.org/10.1534/genetics.116.191148openalex-snapshot
The Genetic Basis of Natural Variation in Caenorhabditis elegans Telomere Length
inferredcites →https://doi.org/10.1534/genetics.116.198812openalex-snapshot
The RNAi Inheritance Machinery ofCaenorhabditis elegans
inferredcites →https://doi.org/10.1534/genetics.117.300106openalex-snapshot
Lipid and Carbohydrate Metabolism in Caenorhabditis elegans
inferredcites →https://doi.org/10.1634/theoncologist.6-suppl_2-1openalex-snapshot
Introduction: The History of Arsenic Trioxide in Cancer Therapy
inferredcites →https://doi.org/10.1634/theoncologist.6-suppl_2-22openalex-snapshot
Clinical Trials of Arsenic Trioxide in Hematologic and Solid Tumors: Overview of the National Cancer Institute Cooperative Research and Development Studies
inferredcites →https://doi.org/10.18632/oncotarget.14733openalex-snapshot
Metabolism, toxicity and anticancer activities of arsenic compounds
inferredcites →https://doi.org/10.18637/jss.v067.i01openalex-snapshot
Fitting Linear Mixed-Effects Models Using lme4
inferredcites →https://doi.org/10.3835/plantgenome2011.08.0024openalex-snapshot
Ridge Regression and Other Kernels for Genomic Selection with R Package rrBLUP
inferredcites →https://doi.org/10.4324/9780203771587openalex-snapshot
Statistical Power Analysis for the Behavioral Sciences
inferredcites →https://doi.org/10.5281/zenodo.1284472openalex-snapshot
sjstats: Statistical Functions for Regression Models
inferredcites →https://doi.org/10.7554/elife.00429openalex-snapshot
A novel sphingolipid-TORC1 pathway critically promotes postembryonic development in Caenorhabditis elegans

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inferred← citeshttps://doi.org/10.1101/565218openalex-snapshot
A nematode-specific gene underlies bleomycin-response variation in Caenorhabditis elegans
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