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A nematode-specific gene underlies bleomycin-response variation in Caenorhabditis elegans

https://doi.org/10.1101/565218
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Outgoing claims: the papers this work cites, builds on, or argues with.

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A clinical review of bleomycin—a new antineoplastic agent
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Caenorhabditis elegans as a Model in Developmental Toxicology
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Gene organization in the bleomycin-resistance region of the producer organism Streptomyces verticillus
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Genetic Heterogeneity in Human Disease
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Bacterial Metabolism Affects the C. elegans Response to Cancer Chemotherapeutics
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Natural diversity facilitates the discovery of conserved chemotherapeutic response mechanisms
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Quantitative Mapping of a Digenic Behavioral Trait Implicates Globin Variation in C. elegans Sensory Behaviors
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Identification of gene–environment interactions in cancer studies using penalization
inferredcites →https://doi.org/10.1016/s1074-5521(00)00011-9openalex-snapshot
The biosynthetic gene cluster for the antitumor drug bleomycin from Streptomyces verticillus ATCC15003 supporting functional interactions between nonribosomal peptide synthetases and a polyketide synthase
inferredcites →https://doi.org/10.1021/cr00081a011openalex-snapshot
Mechanisms of bleomycin-induced DNA degradation
inferredcites →https://doi.org/10.1021/np010550qopenalex-snapshot
Cloning and Characterization of the Bleomycin Biosynthetic Gene Cluster from Streptomyces verticillus ATCC15003
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Pharmacogenetics and cancer therapy
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Rapid gene mapping in Caenorhabditis elegans using a high density polymorphism map
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Molecular basis of the copulatory plug polymorphism in Caenorhabditis elegans
inferredcites →https://doi.org/10.1038/nature09821openalex-snapshot
Catecholamine receptor polymorphisms affect decision-making in C. elegans
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Finding the sources of missing heritability in a yeast cross
inferredcites →https://doi.org/10.1038/nbt.3437openalex-snapshot
Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9
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Near-optimal probabilistic RNA-seq quantification
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DAF-16 employs the chromatin remodeller SWI/SNF to promote stress resistance and longevity
inferredcites →https://doi.org/10.1038/ng.1050openalex-snapshot
Chromosome-scale selective sweeps shape Caenorhabditis elegans genomic diversity
inferredcites →https://doi.org/10.1038/nmeth.4324openalex-snapshot
Differential analysis of RNA-seq incorporating quantification uncertainty
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The Phyre2 web portal for protein modeling, prediction and analysis
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Gene–environment interactions in human diseases
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The genetic basis of natural variation in a phoretic behavior
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Caenorhabditis elegans responses to bacteria from its natural habitats
inferredcites →https://doi.org/10.1073/pnas.80.10.3064openalex-snapshot
Lack of metabolism as the biochemical basis of bleomycin-induced pulmonary toxicity.
inferredcites →https://doi.org/10.1080/095530098141429openalex-snapshot
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PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses
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A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
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VCF-kit: assorted utilities for the variant call format
inferredcites →https://doi.org/10.1093/genetics/77.1.71openalex-snapshot
THE GENETICS OF CAENORHABDITIS ELEGANS
inferredcites →https://doi.org/10.1093/hmg/ddq509openalex-snapshot
A genetic variant near the PMAIP1/Noxa gene is associated with increased bleomycin sensitivity
inferredcites →https://doi.org/10.1093/jnci/91.13.1125openalex-snapshot
Inherited Susceptibility to Bleomycin-Induced Chromatid Breaks in Cultured Peripheral Blood Lymphocytes
inferredcites →https://doi.org/10.1093/nar/29.1.82openalex-snapshot
WormBase: network access to the genome and biology of Caenorhabditis elegans
inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot
MUSCLE: multiple sequence alignment with high accuracy and high throughput
inferredcites →https://doi.org/10.1093/nar/gkw893openalex-snapshot
CeNDR, the Caenorhabditis elegans natural diversity resource
inferredcites →https://doi.org/10.1097/01213011-200506000-00005openalex-snapshot
Genetic variation in the bleomycin hydrolase gene and bleomycin-induced pulmonary toxicity in germ cell cancer patients
inferredcites →https://doi.org/10.1101/373787openalex-snapshot
Natural variation in C. elegans arsenic toxicity is explained by differences in branched chain amino acid metabolism
inferredcites →https://doi.org/10.1101/gr.208902openalex-snapshot
High-Throughput Gene Mapping in Caenorhabditis elegans
inferredcites →https://doi.org/10.1101/gr.3729105openalex-snapshot
Genomics in C. elegans: So many genes, such a little worm: Table 1.
inferredcites →https://doi.org/10.1111/cas.12186openalex-snapshot
Genome‐wide association study of chemotherapeutic agent‐induced severe neutropenia/leucopenia for patients in Biobank Japan
inferredcites →https://doi.org/10.1126/science.1151107openalex-snapshot
Widespread Genetic Incompatibility in C. Elegans Maintained by Balancing Selection
inferredcites →https://doi.org/10.1126/science.1166527openalex-snapshot
A Polymorphism in npr-1 Is a Behavioral Determinant of Pathogen Susceptibility in C. elegans
inferredcites →https://doi.org/10.1126/science.1194208openalex-snapshot
Selection at Linked Sites Shapes Heritable Phenotypic Variation in C. elegans
inferredcites →https://doi.org/10.1126/science.1214318openalex-snapshot
Natural Variation in a Chloride Channel Subunit Confers Avermectin Resistance in C. elegans
inferredcites →https://doi.org/10.1126/science.282.5396.2012openalex-snapshot
Genome Sequence of the Nematode C. elegans : A Platform for Investigating Biology
inferredcites →https://doi.org/10.1128/jvi.00893-18openalex-snapshot
Structural and Biochemical Characterization of Endoribonuclease Nsp15 Encoded by Middle East Respiratory Syndrome Coronavirus
inferredcites →https://doi.org/10.1186/1471-2105-5-113openalex-snapshot
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
inferredcites →https://doi.org/10.1186/gb-2005-6-5-r44openalex-snapshot
The Sequence Ontology: a tool for the unification of genome annotations
inferredcites →https://doi.org/10.1186/gb-2010-11-10-r106openalex-snapshot
Differential expression analysis for sequence count data
inferredcites →https://doi.org/10.1186/s13742-015-0047-8openalex-snapshot
Second-generation PLINK: rising to the challenge of larger and richer datasets
inferredcites →https://doi.org/10.1200/jco.2007.14.1606openalex-snapshot
Variation in Bleomycin Hydrolase Gene Is Associated With Reduced Survival After Chemotherapy for Testicular Germ Cell Cancer
inferredcites →https://doi.org/10.1371/journal.pbio.1001115openalex-snapshot
A Novel Sperm-Delivered Toxin Causes Late-Stage Embryo Lethality and Transmission Ratio Distortion in C. elegans
inferredcites →https://doi.org/10.1371/journal.pgen.0030034openalex-snapshot
A Caenorhabditis elegans Wild Type Defies the Temperature–Size Rule Owing to a Single Nucleotide Polymorphism in tra-3
inferredcites →https://doi.org/10.1371/journal.pgen.1000419openalex-snapshot
Recombinational Landscape and Population Genomics of Caenorhabditis elegans
inferredcites →https://doi.org/10.1371/journal.pgen.1003157openalex-snapshot
Long-Range Regulatory Polymorphisms Affecting a GABA Receptor Constitute a Quantitative Trait Locus (QTL) for Social Behavior in Caenorhabditis elegans
inferredcites →https://doi.org/10.1371/journal.pgen.1004156openalex-snapshot
A Variant in the Neuropeptide Receptor npr-1 is a Major Determinant of Caenorhabditis elegans Growth and Physiology
inferredcites →https://doi.org/10.1371/journal.pgen.1005236openalex-snapshot
Systemic Regulation of RAS/MAPK Signaling by the Serotonin Metabolite 5-HIAA
inferredcites →https://doi.org/10.1371/journal.pgen.1006891openalex-snapshot
Natural variation in a single amino acid substitution underlies physiological responses to topoisomerase II poisons
inferredcites →https://doi.org/10.1371/journal.pone.0111090openalex-snapshot
COPASutils: An R Package for Reading, Processing, and Visualizing Data from COPAS Large-Particle Flow Cytometers
inferredcites →https://doi.org/10.1371/journal.pone.0156744openalex-snapshot
Genome-Assisted Prediction of Quantitative Traits Using the R Package sommer
inferredcites →https://doi.org/10.1371/journal.ppat.1007226openalex-snapshot
Extreme allelic heterogeneity at a Caenorhabditis elegans beta-tubulin locus explains natural resistance to benzimidazoles
inferredcites →https://doi.org/10.1534/g3.112.004259openalex-snapshot
Shrinkage Estimation of the Realized Relationship Matrix
inferredcites →https://doi.org/10.1534/g3.114.013151openalex-snapshot
Widespread Genomic Incompatibilities inCaenorhabditis elegans
inferredcites →https://doi.org/10.1534/g3.115.017178openalex-snapshot
A Powerful New Quantitative Genetics Platform, Combining Caenorhabditis elegans High-Throughput Fitness Assays with a Large Collection of Recombinant Strains
inferredcites →https://doi.org/10.1534/genetics.107.080101openalex-snapshot
Efficient Control of Population Structure in Model Organism Association Mapping
inferredcites →https://doi.org/10.1534/genetics.115.175950openalex-snapshot
Remarkably Divergent Regions Punctuate the Genome Assembly of the Caenorhabditis elegans Hawaiian Strain CB4856
inferredcites →https://doi.org/10.1534/genetics.116.191148openalex-snapshot
The Genetic Basis of Natural Variation in Caenorhabditis elegans Telomere Length
inferredcites →https://doi.org/10.1534/genetics.118.301311openalex-snapshot
Shared Genomic Regions Underlie Natural Variation in Diverse Toxin Responses
inferredcites →https://doi.org/10.1895/wormbook.1.177.1openalex-snapshot
A Transparent window into biology: A primer on Caenorhabditis elegans
inferredcites →https://doi.org/10.3109/10428194.2012.752080openalex-snapshot
Pharmacogenetic analysis in the treatment of Hodgkin lymphoma
inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot
R: A Language and Environment for Statistical Computing
inferredcites →https://doi.org/10.3835/plantgenome2011.08.0024openalex-snapshot
Ridge Regression and Other Kernels for Genomic Selection with R Package rrBLUP
inferredcites →https://doi.org/10.7554/elife.12499openalex-snapshot
Sleep-active neuron specification and sleep induction require FLP-11 neuropeptides to systemically induce sleep
inferredcites →https://doi.org/10.7554/elife.40260openalex-snapshot
Natural variation in C. elegans arsenic toxicity is explained by differences in branched chain amino acid metabolism

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1093/database/baz149openalex-snapshot
WormQTL2: an interactive platform for systems genetics in Caenorhabditis elegans
inferred← citeshttps://doi.org/10.1101/2021.03.04.433879openalex-snapshot
The genetics of gene expression in a C. elegans multi parental recombinant inbred line population
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