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The USTC complex co-opts an ancient machinery to drive piRNA transcription in C. elegans

https://doi.org/10.1101/377390
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/embr.201337898openalex-snapshot
Transcriptional properties and splicing of the flamenco piRNA cluster
inferredcites →https://doi.org/10.1002/prot.21352openalex-snapshot
Structure of the SANT domain from the Xenopus chromatin remodeling factor ISWI
inferredcites →https://doi.org/10.1016/b978-0-12-407675-4.00001-8openalex-snapshot
Biology and Mechanisms of Short RNAs in Caenorhabditis elegans
inferredcites →https://doi.org/10.1016/j.biochi.2007.05.007openalex-snapshot
Overlapping pathways dictate termination of RNA polymerase II transcription
inferredcites →https://doi.org/10.1016/j.cell.2006.10.040openalex-snapshot
Large-Scale Sequencing Reveals 21U-RNAs and Additional MicroRNAs and Endogenous siRNAs in C. elegans
inferredcites →https://doi.org/10.1016/j.cell.2007.01.043openalex-snapshot
Discrete Small RNA-Generating Loci as Master Regulators of Transposon Activity in Drosophila
inferredcites →https://doi.org/10.1016/j.cell.2007.03.026openalex-snapshot
A Role for Piwi and piRNAs in Germ Cell Maintenance and Transposon Silencing in Zebrafish
inferredcites →https://doi.org/10.1016/j.cell.2009.07.014openalex-snapshot
The Drosophila HP1 Homolog Rhino Is Required for Transposon Silencing and piRNA Production by Dual-Strand Clusters
inferredcites →https://doi.org/10.1016/j.cell.2012.06.015openalex-snapshot
piRNAs Initiate an Epigenetic Memory of Nonself RNA in the C. elegans Germline
inferredcites →https://doi.org/10.1016/j.cell.2012.06.016openalex-snapshot
C. elegans piRNAs Mediate the Genome-wide Surveillance of Germline Transcripts
inferredcites →https://doi.org/10.1016/j.cell.2012.06.018openalex-snapshot
piRNAs Can Trigger a Multigenerational Epigenetic Memory in the Germline of C. elegans
inferredcites →https://doi.org/10.1016/j.cell.2012.11.023openalex-snapshot
CapSeq and CIP-TAP Identify Pol II Start Sites and Reveal Capped Small RNAs as C. elegans piRNA Precursors
inferredcites →https://doi.org/10.1016/j.cell.2013.11.032openalex-snapshot
Argonautes Promote Male Fertility and Provide a Paternal Memory of Germline Gene Expression in C. elegans
inferredcites →https://doi.org/10.1016/j.cell.2014.04.031openalex-snapshot
The Rhino-Deadlock-Cutoff Complex Licenses Noncanonical Transcription of Dual-Strand piRNA Clusters in Drosophila
inferredcites →https://doi.org/10.1016/j.cell.2016.02.008openalex-snapshot
The RNase PARN-1 Trims piRNA 3′ Ends to Promote Transcriptome Surveillance in C. elegans
inferredcites →https://doi.org/10.1016/j.cell.2017.04.034openalex-snapshot
Ubiquitination-Deficient Mutations in Human Piwi Cause Male Infertility by Impairing Histone-to-Protamine Exchange during Spermiogenesis
inferredcites →https://doi.org/10.1016/j.cub.2008.05.009openalex-snapshot
A C. elegans Piwi, PRG-1, Regulates 21U-RNAs during Spermatogenesis
inferredcites →https://doi.org/10.1016/j.cub.2015.07.051openalex-snapshot
The Nrde Pathway Mediates Small-RNA-Directed Histone H3 Lysine 27 Trimethylation in Caenorhabditis elegans
inferredcites →https://doi.org/10.1016/j.devcel.2007.03.001openalex-snapshot
MIWI2 Is Essential for Spermatogenesis and Repression of Transposons in the Mouse Male Germline
inferredcites →https://doi.org/10.1016/j.devcel.2012.12.006openalex-snapshot
piRNA-Triggered MIWI Ubiquitination and Removal by APC/C in Late Spermatogenesis
inferredcites →https://doi.org/10.1016/j.devcel.2013.11.014openalex-snapshot
The C. elegans CSR-1 Argonaute Pathway Counteracts Epigenetic Silencing to Promote Germline Gene Expression
inferredcites →https://doi.org/10.1016/j.devcel.2014.09.015openalex-snapshot
The C. elegans SNAPc Component SNPC-4 Coats piRNA Domains and Is Globally Required for piRNA Abundance
inferredcites →https://doi.org/10.1016/j.jgg.2012.12.007openalex-snapshot
Small RNAs, RNAi and the Inheritance of Gene Silencing in Caenorhabditis elegans
inferredcites →https://doi.org/10.1016/j.molcel.2008.06.002openalex-snapshot
PRG-1 and 21U-RNAs Interact to Form the piRNA Complex Required for Fertility in C. elegans
inferredcites →https://doi.org/10.1016/j.molcel.2008.06.003openalex-snapshot
Piwi and piRNAs Act Upstream of an Endogenous siRNA Pathway to Suppress Tc3 Transposon Mobility in the Caenorhabditis elegans Germline
inferredcites →https://doi.org/10.1016/j.molcel.2008.09.003openalex-snapshot
A piRNA Pathway Primed by Individual Transposons Is Linked to De Novo DNA Methylation in Mice
inferredcites →https://doi.org/10.1016/j.molcel.2012.06.021openalex-snapshot
Promoters Recognized by Forkhead Proteins Exist for Individual 21U-RNAs
inferredcites →https://doi.org/10.1016/j.molcel.2013.02.016openalex-snapshot
An Ancient Transcription Factor Initiates the Burst of piRNA Production during Early Meiosis in Mouse Testes
inferredcites →https://doi.org/10.1016/j.neuron.2018.01.014openalex-snapshot
A Neuronal piRNA Pathway Inhibits Axon Regeneration in C. elegans
inferredcites →https://doi.org/10.1016/j.tibs.2015.12.008openalex-snapshot
One Loop to Rule Them All: The Ping-Pong Cycle and piRNA-Guided Silencing
inferredcites →https://doi.org/10.1016/s0378-1119(00)00579-5openalex-snapshot
Ingestion of bacterially expressed dsRNAs can produce specific and potent genetic interference in Caenorhabditis elegans
inferredcites →https://doi.org/10.1038/emboj.2011.308openalex-snapshot
A systematic analysis of Drosophila TUDOR domain‐containing proteins identifies Vreteno and the Tdrd12 family as essential primary piRNA pathway factors
inferredcites →https://doi.org/10.1038/emboj.2011.334openalex-snapshot
The Cutoff protein regulates piRNA cluster expression and piRNA production in the Drosophila germline
inferredcites →https://doi.org/10.1038/nature04917openalex-snapshot
A germline-specific class of small RNAs binds mammalian Piwi proteins
inferredcites →https://doi.org/10.1038/nature09095openalex-snapshot
Small regulatory RNAs inhibit RNA polymerase II during the elongation phase of transcription
inferredcites →https://doi.org/10.1038/nature11502openalex-snapshot
The structural biochemistry of Zucchini implicates it as a nuclease in piRNA biogenesis
inferredcites →https://doi.org/10.1038/nature13315openalex-snapshot
A single female-specific piRNA is the primary determiner of sex in the silkworm
inferredcites →https://doi.org/10.1038/nature23482openalex-snapshot
A heterochromatin-dependent transcription machinery drives piRNA expression
inferredcites →https://doi.org/10.1038/ng.248openalex-snapshot
Single-copy insertion of transgenes in Caenorhabditis elegans
inferredcites →https://doi.org/10.1038/nprot.2012.101openalex-snapshot
Identifying ChIP-seq enrichment using MACS
inferredcites →https://doi.org/10.1038/nrg3495openalex-snapshot
PIWI-interacting RNAs: from generation to transgenerational epigenetics
inferredcites →https://doi.org/10.1038/nrm1314openalex-snapshot
The SANT domain: a unique histone-tail-binding module?
inferredcites →https://doi.org/10.1038/nrm3089openalex-snapshot
PIWI-interacting small RNAs: the vanguard of genome defence
inferredcites →https://doi.org/10.1042/bst0360590openalex-snapshot
Expression of human snRNA genes from beginning to end
inferredcites →https://doi.org/10.1073/pnas.1608162113openalex-snapshot
Stable Caenorhabditis elegans chromatin domains separate broadly expressed and developmentally regulated genes
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btp698openalex-snapshot
Fast and accurate long-read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btv145openalex-snapshot
ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization
inferredcites →https://doi.org/10.1093/nar/gku949openalex-snapshot
SMART: recent updates, new developments and status in 2015
inferredcites →https://doi.org/10.1093/nar/gkx922openalex-snapshot
20 years of the SMART protein domain annotation resource
inferredcites →https://doi.org/10.1099/vir.0.053850-0openalex-snapshot
Knockdown of piRNA pathway proteins results in enhanced Semliki Forest virus production in mosquito cells
inferredcites →https://doi.org/10.1101/gad.12.23.3715openalex-snapshot
A novel class of evolutionarily conserved genes defined by piwi are essential for stem cell self-renewal
inferredcites →https://doi.org/10.1101/gad.1563607openalex-snapshot
Pimet, the Drosophila homolog of HEN1, mediates 2′- O -methylation of Piwi- interacting RNAs at their 3′ ends
inferredcites →https://doi.org/10.1101/gad.235622.113openalex-snapshot
A genome-wide RNAi screen identifies factors required for distinct stages of C. elegans piRNA biogenesis
inferredcites →https://doi.org/10.1101/gad.238105.114openalex-snapshot
PRDE-1 is a nuclear factor essential for the biogenesis of Ruby motif-dependent piRNAs in C. elegans
inferredcites →https://doi.org/10.1101/gad.238220.114openalex-snapshot
PID-1 is a novel factor that operates during 21U-RNA biogenesis in Caenorhabditis elegans
inferredcites →https://doi.org/10.1101/gad.254631.114openalex-snapshot
The RNA helicase MOV10L1 binds piRNA precursors to initiate piRNA processing
inferredcites →https://doi.org/10.1101/sqb.2009.74.052openalex-snapshot
Molecular Evolution of piRNA and Transposon Control Pathways in Drosophila
inferredcites →https://doi.org/10.1126/science.1116110openalex-snapshot
SMEDWI-2 Is a PIWI-Like Protein That Regulates Planarian Stem Cells
inferredcites →https://doi.org/10.1126/science.1220952openalex-snapshot
Function, Targets, and Evolution of Caenorhabditis elegans piRNAs
inferredcites →https://doi.org/10.1146/annurev-genet-110410-132432openalex-snapshot
DNA Elimination in Ciliates: Transposon Domestication and Genome Surveillance
inferredcites →https://doi.org/10.1186/1471-2105-11-237openalex-snapshot
ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data
inferredcites →https://doi.org/10.1242/dev.006486openalex-snapshot
Biogenesis and germline functions of piRNAs
inferredcites →https://doi.org/10.1242/dev.124.12.2463openalex-snapshot
A novel group of pumilio mutations affects the asymmetric division of germline stem cells in the Drosophila ovary
inferredcites →https://doi.org/10.1261/rna.1085008openalex-snapshot
The PIWI proteins SMEDWI-2 and SMEDWI-3 are required for stem cell function and piRNA expression in planarians
inferredcites →https://doi.org/10.12688/wellcomeopenres.10004.1openalex-snapshot
SeqPlots - Interactive software for exploratory data analyses, pattern discovery and visualization in genomics
inferredcites →https://doi.org/10.1371/journal.pgen.1002616openalex-snapshot
PIWI Associated siRNAs and piRNAs Specifically Require the Caenorhabditis elegans HEN1 Ortholog henn-1
inferredcites →https://doi.org/10.1371/journal.pgen.1002617openalex-snapshot
The Caenorhabditis elegans HEN1 Ortholog, HENN-1, Methylates and Stabilizes Select Subclasses of Germline Small RNAs
inferredcites →https://doi.org/10.15252/embj.201695734openalex-snapshot
Hippo kinases maintain polarity during directional cell migration in Caenorhabditis elegans

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1093/genetics/iyad095openalex-snapshot
Sensitized piRNA reporter identifies multiple RNA processing factors involved in piRNA-mediated gene silencing
inferred← citeshttps://doi.org/10.1101/463919openalex-snapshot
Differential phase partition of a PICS complex is required for piRNA processing and chromosome segregation in C. elegans
inferred← citeshttps://doi.org/10.3390/ncrna5010008openalex-snapshot
Function and Evolution of Nematode RNAi Pathways
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