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Rapid Diagnosis of Lower Respiratory Infection using Nanopore-based Clinical Metagenomics
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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The pneumococcus: why a commensal misbehaves
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Microfluidic-based isolation of bacteria from whole blood for sepsis diagnostics
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Antibiotic Resistance Patterns and Related Mobile Genetic Elements of Pneumococci and β-Hemolytic Streptococci in Thai Healthy Children
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Emergency management of community-acquired bacterial pneumonia: what is new since the 2007 Infectious Diseases Society of America/American Thoracic Society guidelines
inferredcites →https://doi.org/10.1016/j.diagmicrobio.2006.01.007openalex-snapshot
Quantitative detection of Streptococcus pneumoniae, Haemophilus influenzae, and Moraxella catarrhalis in lower respiratory tract samples by real-time PCR
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Community-acquired Streptococcus mitis meningitis: a case report
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Application of next generation sequencing in clinical microbiology and infection prevention
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Comparison of microbial DNA enrichment tools for metagenomic whole genome sequencing
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EMERGENCY PATHOLOGY SERVICE
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Real-time, portable genome sequencing for Ebola surveillance
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Establishment and cryptic transmission of Zika virus in Brazil and the Americas
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Performance comparison of benchtop high-throughput sequencing platforms
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MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island
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De novo assembly of haplotype-resolved genomes with trio binning
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New opportunities for managing acute and chronic lung infections
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Rapid Detection of Pathogens and Antimicrobial Resistance in Intensive Care Patients Using Nucleic Acid-Based Techniques
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Nasopharyngeal Carriage ofStreptococcus pneumoniaeby Adults and Children in Community and Family Settings
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Minimap2: pairwise alignment for nucleotide sequences
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Analytical validation of a novel high multiplexing real-time PCR array for the identification of key pathogens causative of bacterial ventilator-associated pneumonia and their associated resistance genes
inferredcites →https://doi.org/10.1093/jac/dkw397openalex-snapshot
Identification of bacterial pathogens and antimicrobial resistance directly from clinical urines by nanopore-based metagenomic sequencing
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Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
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CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database
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DNA extraction from primary liquid blood cultures for bloodstream infection diagnosis using whole genome sequencing
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Detection of Mycoplasma pneumoniae in adult community-acquired pneumonia by PCR and serology
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Whole genome amplification and sequencing of low cell numbers directly from a bacteria spiked blood model
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Rapid profiling of the preterm infant gut microbiota using nanopore sequencing aids pathogen diagnostics
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Centrifuge: rapid and sensitive classification of metagenomic sequences
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Canu: scalable and accurate long-read assembly via adaptive k -mer weighting and repeat separation
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Tn 916 -like genetic elements: a diverse group of modular mobile elements conferring antibiotic resistance
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Sulfonamide Resistance in Haemophilus influenzae Mediated by Acquisition of sul2 or a Short Insertion in Chromosomal folP
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Diagnosis of Clostridium difficile Infection: an Ongoing Conundrum for Clinicians and for Clinical Laboratories
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Pneumolysin Released duringStreptococcus pneumoniaeAutolysis Is a Potent Activator of Intracellular Oxygen Radical Production in Neutrophils
inferredcites →https://doi.org/10.1128/jcm.01881-16openalex-snapshot
Rapid Metagenomic Next-Generation Sequencing during an Investigation of Hospital-Acquired Human Parainfluenza Virus 3 Infections
inferredcites →https://doi.org/10.1128/jcm.02270-10openalex-snapshot
Application of TaqMan Low-Density Arrays for Simultaneous Detection of Multiple Respiratory Pathogens
inferredcites →https://doi.org/10.1128/jcm.03050-15openalex-snapshot
Depletion of Human DNA in Spiked Clinical Specimens for Improvement of Sensitivity of Pathogen Detection by Next-Generation Sequencing
inferredcites →https://doi.org/10.1128/jcm.40.9.3115-3120.2002openalex-snapshot
Laboratory Diagnosis of Lower Respiratory Tract Infections: Controversy and Conundrums
inferredcites →https://doi.org/10.1136/bmjresp-2017-000203openalex-snapshot
Burden of bacterial upper respiratory tract pathogens in school children of Nepal
inferredcites →https://doi.org/10.1136/jclinpath-2014-202818openalex-snapshot
Use of MALDI Biotyper plus ClinProTools mass spectra analysis for correct identification of Streptococcus pneumoniae and Streptococcus mitis / oralis
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Role of Serial Routine Microbiologic Culture Results in the Initial Management of Ventilator-associated Pneumonia
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Rapid Pathogen Identification in Bacterial Pneumonia Using Real-Time Metagenomics
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Microbiological Diagnosis of Ventilator-associated Pneumonia
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BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons
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Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis
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Community-acquired pneumonia in the United Kingdom: a call to action
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A Method for Selectively Enriching Microbial DNA from Contaminating Vertebrate Host DNA
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Variation on a theme; an overview of the Tn916/Tn1545 family of mobile genetic elements in the oral and nasopharyngeal streptococci
inferredcites →https://doi.org/10.3389/fmicb.2017.00182openalex-snapshot
Plasmid Classification in an Era of Whole-Genome Sequencing: Application in Studies of Antibiotic Resistance Epidemiology
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MinION Nanopore Sequencing Enables Correlation between Resistome Phenotype and Genotype of Coliform Bacteria in Municipal Sewage
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Incoming claims: where this work appears in other papers’ reference lists and arguments.
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inferred← citeshttps://doi.org/10.1038/s10038-019-0675-4openalex-snapshot
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Third-Generation Sequencing in the Clinical Laboratory: Exploring the Advantages and Challenges of Nanopore Sequencing
inferred← citeshttps://doi.org/10.1128/jcm.02916-20openalex-snapshot
Metagenomic Sequencing as a Pathogen-Agnostic Clinical Diagnostic Tool for Infectious Diseases: a Systematic Review and Meta-analysis of Diagnostic Test Accuracy Studies
inferred← citeshttps://doi.org/10.1128/msystems.00198-19openalex-snapshot
Microfluidics-Based Enrichment and Whole-Genome Amplification Enable Strain-Level Resolution for Airway Metagenomics
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inferred← citeshttps://doi.org/10.1183/13993003.01607-2018openalex-snapshot
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Rapid diagnosis of Capnocytophaga canimorsus septic shock in an immunocompetent individual using real-time Nanopore sequencing: a case report
inferred← citeshttps://doi.org/10.1186/s13059-019-1727-yopenalex-snapshot
Performance of neural network basecalling tools for Oxford Nanopore sequencing
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Integrating informatics tools and portable sequencing technology for rapid detection of resistance to anti-tuberculous drugs
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Rapid Diagnosis of Capnocytophaga canimorsus Septic Shock in an Immunocompetent Individual Using Real-Time Nanopore Sequencing
inferred← citeshttps://doi.org/10.21037/jtd.2018.09.20openalex-snapshot
Respiratory infection: insights from assembly 10 of the European Respiratory Society 2018 Annual Congress
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Lineage calling can identify antibiotic resistant clones within minutes
inferred← citeshttps://doi.org/10.3389/fcimb.2023.1238872openalex-snapshot
Rapid diagnosis of Mycobacterium marinum infection using targeted nanopore sequencing: a case report
inferred← citeshttps://doi.org/10.3389/fmicb.2022.1065159openalex-snapshot
The application of targeted nanopore sequencing for the identification of pathogens and resistance genes in lower respiratory tract infections
inferred← citeshttps://doi.org/10.3389/fpubh.2018.00363openalex-snapshot
Advances in Clinical Sample Preparation for Identification and Characterization of Bacterial Pathogens Using Metagenomics
inferred← citeshttps://doi.org/10.3390/diagnostics9020037openalex-snapshot
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inferred← citeshttps://doi.org/10.5772/intechopen.106272openalex-snapshot
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