On the public citation graph

From genotype to antibiotic susceptibility phenotype in Enterobacteriaceae: a clinical perspective

https://doi.org/10.1101/503607
0 signed · 41 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/phar.1536openalex-snapshot
Comparative Whole Genome Sequencing of Community‐Associated Methicillin‐Resistant Staphylococcus aureus Sequence Type 8 from Primary Care Clinics in a Texas Community
inferredcites →https://doi.org/10.1016/j.cmi.2016.09.008openalex-snapshot
Whole genome sequencing of Mycobacterium tuberculosis for detection of drug resistance: a systematic review
inferredcites →https://doi.org/10.1016/j.cmi.2017.01.015openalex-snapshot
Clonal or not clonal? Investigating hospital outbreaks of KPC-producing Klebsiella pneumoniae with whole-genome sequencing
inferredcites →https://doi.org/10.1016/j.diagmicrobio.2008.11.016openalex-snapshot
Prevalence and characteristics of aac(6′)-Ib-cr in AmpC-producing Enterobacter cloacae, Citrobacter freundii, and Serratia marcescens: a multicenter study from Korea
inferredcites →https://doi.org/10.1016/j.drup.2010.08.003openalex-snapshot
Aminoglycoside modifying enzymes
inferredcites →https://doi.org/10.1016/j.ijantimicag.2017.02.026openalex-snapshot
Correlation between phenotypic antibiotic susceptibility and the resistome in Pseudomonas aeruginosa
inferredcites →https://doi.org/10.1038/ncomms10063openalex-snapshot
Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis
inferredcites →https://doi.org/10.1038/ncomms11465openalex-snapshot
Correction: Corrigendum: Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis
inferredcites →https://doi.org/10.1038/nmeth.3176openalex-snapshot
Fast and sensitive protein alignment using DIAMOND
inferredcites →https://doi.org/10.1038/nmeth.3589openalex-snapshot
MetaPhlAn2 for enhanced metagenomic taxonomic profiling
inferredcites →https://doi.org/10.1056/nejmoa1109910openalex-snapshot
Rapid Whole-Genome Sequencing for Investigation of a Neonatal MRSA Outbreak
inferredcites →https://doi.org/10.1089/mdr.2010.0137openalex-snapshot
CMY-42, a Novel Plasmid-Mediated CMY-2 Variant AmpC Beta-Lactamase
inferredcites →https://doi.org/10.1093/bioinformatics/btu153openalex-snapshot
Prokka: rapid prokaryotic genome annotation
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/bioinformatics/btu661openalex-snapshot
A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data
inferredcites →https://doi.org/10.1093/jac/dkp424openalex-snapshot
Smaqnr, a new chromosome-encoded quinolone resistance determinant in Serratia marcescens
inferredcites →https://doi.org/10.1093/jac/dks261openalex-snapshot
Identification of acquired antimicrobial resistance genes
inferredcites →https://doi.org/10.1093/jac/dks496openalex-snapshot
Genotyping using whole-genome sequencing is a realistic alternative to surveillance based on phenotypic antimicrobial susceptibility testing
inferredcites →https://doi.org/10.1093/jac/dkt180openalex-snapshot
Predicting antimicrobial susceptibilities for Escherichia coli and Klebsiella pneumoniae isolates using whole genomic sequence data
inferredcites →https://doi.org/10.1093/jac/dkv186openalex-snapshot
WGS accurately predicts antimicrobial resistance inEscherichia coli
inferredcites →https://doi.org/10.1093/jac/dkx170openalex-snapshot
Comparison of phenotypic and WGS-derived antimicrobial resistance profiles of Shigella sonnei isolated from cases of diarrhoeal disease in England and Wales, 2015
inferredcites →https://doi.org/10.1093/jac/dkx301openalex-snapshot
Comparison of phenotypic and WGS-derived antimicrobial resistance profiles of enteroaggregative Escherichia coli isolated from cases of diarrhoeal disease in England, 2015–16
inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot
MUSCLE: multiple sequence alignment with high accuracy and high throughput
inferredcites →https://doi.org/10.1097/mcp.0b013e32835f27beopenalex-snapshot
Hospital-acquired pneumonia and ventilator-associated pneumonia
inferredcites →https://doi.org/10.1101/387548openalex-snapshot
Rapid Diagnosis of Lower Respiratory Infection using Nanopore-based Clinical Metagenomics
inferredcites →https://doi.org/10.1101/cshperspect.a025320openalex-snapshot
Topoisomerase Inhibitors: Fluoroquinolone Mechanisms of Action and Resistance
inferredcites →https://doi.org/10.1111/cea.12905openalex-snapshot
The farming environment protects mice from allergen‐induced skin contact hypersensitivity
inferredcites →https://doi.org/10.1111/j.1469-0691.2011.03703.xopenalex-snapshot
EUCAST expert rules in antimicrobial susceptibility testing
inferredcites →https://doi.org/10.1111/j.1574-6968.1999.tb13539.xopenalex-snapshot
Mutations in theampCpromoter ofEscherichia coliisolates resistant to oxyiminocephalosporins without extended spectrum β-lactamase production
inferredcites →https://doi.org/10.1128/aac.00419-13openalex-snapshot
The Comprehensive Antibiotic Resistance Database
inferredcites →https://doi.org/10.1128/aac.01034-12openalex-snapshot
Characterization of OXA-204, a Carbapenem-Hydrolyzing Class D β-Lactamase from Klebsiella pneumoniae
inferredcites →https://doi.org/10.1128/aac.03954-14openalex-snapshot
The Resistome of Pseudomonas aeruginosa in Relationship to Phenotypic Susceptibility
inferredcites →https://doi.org/10.1128/aac.05187-11openalex-snapshot
Citrobacter spp. as a Source of qnrB Alleles
inferredcites →https://doi.org/10.1128/aac.44.2.362-367.2000openalex-snapshot
High-Level Expression of Chromosomally Encoded SHV-1 β-Lactamase and an Outer Membrane Protein Change Confer Resistance to Ceftazidime and Piperacillin- Tazobactam in a Clinical Isolate of Klebsiella pneumoniae
inferredcites →https://doi.org/10.1128/cmr.00036-08openalex-snapshot
AmpC β-Lactamases
inferredcites →https://doi.org/10.1128/jcm.02717-15openalex-snapshot
Consolidating and Exploring Antibiotic Resistance Gene Data Resources
inferredcites →https://doi.org/10.1128/jcm.03117-13openalex-snapshot
Prediction of Staphylococcus aureus Antimicrobial Resistance by Whole-Genome Sequencing
inferredcites →https://doi.org/10.1128/mbio.00583-18openalex-snapshot
Extensive Gene Amplification as a Mechanism for Piperacillin-Tazobactam Resistance in Escherichia coli
inferredcites →https://doi.org/10.3390/antibiotics6040030openalex-snapshot
Establishing Genotype-to-Phenotype Relationships in Bacteria Causing Hospital-Acquired Pneumonia: A Prelude to the Application of Clinical Metagenomics

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1371/journal.pcbi.1006496openalex-snapshot
Close proximity interactions support transmission of ESBL-K. pneumoniae but not ESBL-E. coli in healthcare settings
inferred← citeshttps://doi.org/10.3390/toxins12060414openalex-snapshot
Metabolic Traits of Bovine Shiga Toxin-Producing Escherichia coli (STEC) Strains with Different Colonization Properties
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.