On the public citation graph

Transcription Termination and Antitermination of Bacterial CRISPR Arrays

https://doi.org/10.1101/405316
0 signed · 67 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/(sici)1097-0134(199707)28:3<405::aid-prot10>3.0.co;2-lopenalex-snapshot
Pfam: A comprehensive database of protein domain families based on seed alignments
inferredcites →https://doi.org/10.1002/prot.25199openalex-snapshot
Aquerium: A web application for comparative exploration of domain‐based protein occurrences on the taxonomically clustered genome tree
inferredcites →https://doi.org/10.1007/978-1-62703-646-7_6openalex-snapshot
Clustal Omega, Accurate Alignment of Very Large Numbers of Sequences
inferredcites →https://doi.org/10.1016/0022-2836(89)90002-8openalex-snapshot
Ribosomal RNA operon anti-termination
inferredcites →https://doi.org/10.1016/0092-8674(84)90280-0openalex-snapshot
Antitermination of E. coli rRNA transcription is caused by a control region segment containing lambda nut-like sequences
inferredcites →https://doi.org/10.1016/0092-8674(93)90665-dopenalex-snapshot
Recognition of boxA antiterminator RNA by the E. coli antitermination factors NusB and ribosomal protein S10
inferredcites →https://doi.org/10.1016/0378-1119(89)90359-4openalex-snapshot
Engineering hybrid genes without the use of restriction enzymes: gene splicing by overlap extension
inferredcites →https://doi.org/10.1016/0378-1119(90)90147-jopenalex-snapshot
Construction of mobilizable vectors derived from plasmids RP4, pUC18 and pUC19
inferredcites →https://doi.org/10.1016/j.cell.2015.12.035openalex-snapshot
Biology and Applications of CRISPR Systems: Harnessing Nature’s Toolbox for Genome Engineering
inferredcites →https://doi.org/10.1016/j.cell.2018.05.017openalex-snapshot
Structural Basis for Transcript Elongation Control by NusG Family Universal Regulators
inferredcites →https://doi.org/10.1016/j.jmb.2007.11.022openalex-snapshot
Structural Biophysics of the NusB:NusE Antitermination Complex
inferredcites →https://doi.org/10.1016/j.molcel.2013.05.001openalex-snapshot
Processing-Independent CRISPR RNAs Limit Natural Transformation in Neisseria meningitidis
inferredcites →https://doi.org/10.1016/j.molcel.2020.08.010openalex-snapshot
Structure-Based Mechanisms of a Molecular RNA Polymerase/Chaperone Machine Required for Ribosome Biosynthesis
inferredcites →https://doi.org/10.1016/s0022-2836(05)80360-2openalex-snapshot
Basic Local Alignment Search Tool
inferredcites →https://doi.org/10.1021/acschembio.7b00855openalex-snapshot
Type II-C CRISPR-Cas9 Biology, Mechanism, and Application
inferredcites →https://doi.org/10.1038/nature03239openalex-snapshot
Interaction network containing conserved and essential protein complexes in Escherichia coli
inferredcites →https://doi.org/10.1038/nature10392openalex-snapshot
Evidence for several waves of global transmission in the seventh cholera pandemic
inferredcites →https://doi.org/10.1038/nmicrobiol.2017.3openalex-snapshot
LoaP is a broadly conserved antiterminator protein that regulates antibiotic gene clusters in Bacillus amyloliquefaciens
inferredcites →https://doi.org/10.1038/nrmicro3316openalex-snapshot
Pervasive transcription: illuminating the dark matter of bacterial transcriptomes
inferredcites →https://doi.org/10.1038/s41467-017-02124-9openalex-snapshot
Identification of regulatory targets for the bacterial Nus factor complex
inferredcites →https://doi.org/10.1038/s41467-019-11695-8openalex-snapshot
High-throughput screen reveals sRNAs regulating crRNA biogenesis by targeting CRISPR leader to repress Rho termination
inferredcites →https://doi.org/10.1038/s42003-021-01672-7openalex-snapshot
A multiplex CRISPR interference tool for virulence gene interrogation in Legionella pneumophila
inferredcites →https://doi.org/10.1073/pnas.1903666117openalex-snapshot
The size of the immune repertoire of bacteria
inferredcites →https://doi.org/10.1073/pnas.90.3.970openalex-snapshot
Ribosomal RNA antitermination in vitro: requirement for Nus factors and one or more unidentified cellular components.
inferredcites →https://doi.org/10.1074/jbc.m701210200openalex-snapshot
The Structure of the R184A Mutant of the Inositol Monophosphatase Encoded by suhB and Implications for Its Functional Interactions in Escherichia coli
inferredcites →https://doi.org/10.1089/crispr.2018.0034openalex-snapshot
Selective Maintenance of Multiple CRISPR Arrays Across Prokaryotes
inferredcites →https://doi.org/10.1093/femsre/fuv023openalex-snapshot
Biogenesis pathways of RNA guides in archaeal and bacterial CRISPR-Cas adaptive immunity
inferredcites →https://doi.org/10.1093/gbe/evv113openalex-snapshot
The Contribution of Genetic Recombination to CRISPR Array Evolution
inferredcites →https://doi.org/10.1093/nar/28.9.1864openalex-snapshot
DNA sequence elements located immediately upstream of the -10 hexamer in Escherichia coli promoters: a systematic study
inferredcites →https://doi.org/10.1093/nar/gkm360openalex-snapshot
CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats
inferredcites →https://doi.org/10.1093/nar/gkt444openalex-snapshot
Computational analysis of bacterial RNA-Seq data
inferredcites →https://doi.org/10.1093/nar/gku971openalex-snapshot
Repurposing endogenous type I CRISPR-Cas systems for programmable gene repression
inferredcites →https://doi.org/10.1093/nar/gkv1344openalex-snapshot
The Pfam protein families database: towards a more sustainable future
inferredcites →https://doi.org/10.1093/nar/gky563openalex-snapshot
A multivariate prediction model for Rho-dependent termination of transcription
inferredcites →https://doi.org/10.1093/nar/gkz290openalex-snapshot
Structural basis for the function of SuhB as a transcription factor in ribosomal RNA synthesis
inferredcites →https://doi.org/10.1093/nar/gkz442openalex-snapshot
SuhB is an integral part of the ribosomal antitermination complex and interacts with NusA
inferredcites →https://doi.org/10.1093/nar/gkz915openalex-snapshot
CRISPRCasdb a successor of CRISPRdb containing CRISPR arrays and cas genes from complete genome sequences, and tools to download and query lists of repeats and spacers
inferredcites →https://doi.org/10.1099/mic.0.000005openalex-snapshot
Characterization and evolution of Salmonella CRISPR-Cas systems
inferredcites →https://doi.org/10.1099/mic.0.067462-0openalex-snapshot
Phyletic distribution and conservation of the bacterial transcription termination factor Rho
inferredcites →https://doi.org/10.1101/gad.196741.112openalex-snapshot
Rho and NusG suppress pervasive antisense transcription in Escherichia coli
inferredcites →https://doi.org/10.1111/j.1365-2958.2010.07265.xopenalex-snapshot
Transcription, processing and function of CRISPR cassettes in Escherichia coli
inferredcites →https://doi.org/10.1111/j.1365-2958.2010.07452.xopenalex-snapshot
Dynamic properties of the Sulfolobus CRISPR/Cas and CRISPR/Cmr systems when challenged with vector‐borne viral and plasmid genes and protospacers
inferredcites →https://doi.org/10.1126/science.1128794openalex-snapshot
Selective Silencing of Foreign DNA with Low GC Content by the H-NS Protein in Salmonella
inferredcites →https://doi.org/10.1126/science.1184953openalex-snapshot
A NusE:NusG Complex Links Transcription and Translation
inferredcites →https://doi.org/10.1128/ecosalplus.4.5.3.1openalex-snapshot
Nus Factors of Escherichia coli
inferredcites →https://doi.org/10.1128/iai.59.12.4310-4317.1991openalex-snapshot
Construction of an eae deletion mutant of enteropathogenic Escherichia coli by using a positive-selection suicide vector
inferredcites →https://doi.org/10.1128/jb.00747-15openalex-snapshot
Functional Analysis of Bacteriophage Immunity through a Type I-E CRISPR-Cas System in Vibrio cholerae and Its Application in Bacteriophage Genome Engineering
inferredcites →https://doi.org/10.1128/jb.00760-08openalex-snapshot
Evolutionary Comparison of Ribosomal Operon Antitermination Function
inferredcites →https://doi.org/10.1128/jb.01007-13openalex-snapshot
Genome-Scale Analyses of Escherichia coli and Salmonella enterica AraC Reveal Noncanonical Targets and an Expanded Core Regulon
inferredcites →https://doi.org/10.1128/jb.01233-09openalex-snapshot
Short-Term Signatures of Evolutionary Change in the Salmonella enterica Serovar Typhimurium 14028 Genome
inferredcites →https://doi.org/10.1128/jb.159.1.260-264.1984openalex-snapshot
Evidence for antitermination in Escherichia coli RRNA transcription
inferredcites →https://doi.org/10.1128/jb.177.14.4121-4130.1995openalex-snapshot
Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter
inferredcites →https://doi.org/10.1128/jb.185.24.7085-7091.2003openalex-snapshot
Suppression of Factor-Dependent TranscriptionTermination by AntiterminatorRNA
inferredcites →https://doi.org/10.1128/jb.186.5.1304-1310.2004openalex-snapshot
In Vivo Effect of NusB and NusG on rRNA Transcription Antitermination
inferredcites →https://doi.org/10.1128/mbio.00114-16openalex-snapshot
SuhB Associates with Nus Factors To Facilitate 30S Ribosome Biogenesis in Escherichia coli
inferredcites →https://doi.org/10.1128/mbio.02100-17openalex-snapshot
Determining the Specificity of Cascade Binding, Interference, and Primed Adaptation In Vivo in the Escherichia coli Type I-E CRISPR-Cas System
inferredcites →https://doi.org/10.1128/microbiolspec.rwr-0031-2018openalex-snapshot
Processive Antitermination
inferredcites →https://doi.org/10.1146/annurev-micro-030117-020432openalex-snapshot
Rho Protein: Roles and Mechanisms
inferredcites →https://doi.org/10.1186/1471-2148-5-34openalex-snapshot
Automatic selection of representative proteins for bacterial phylogeny
inferredcites →https://doi.org/10.1261/rna.062083.117openalex-snapshot
Priming in a permissive type I-C CRISPR–Cas system reveals distinct dynamics of spacer acquisition and loss
inferredcites →https://doi.org/10.1371/journal.pcbi.1005891openalex-snapshot
Optimal number of spacers in CRISPR arrays
inferredcites →https://doi.org/10.1371/journal.pgen.1003495openalex-snapshot
High-Resolution Transcriptome Maps Reveal Strain-Specific Regulatory Features of Multiple Campylobacter jejuni Isolates
inferredcites →https://doi.org/10.1371/journal.pgen.1004649openalex-snapshot
Comprehensive Mapping of the Escherichia coli Flagellar Regulatory Network
inferredcites →https://doi.org/10.1371/journal.pone.0044841openalex-snapshot
FRUIT, a Scar-Free System for Targeted Chromosomal Mutagenesis, Epitope Tagging, and Promoter Replacement in Escherichia coli and Salmonella enterica
inferredcites →https://doi.org/10.1371/journal.ppat.0020081openalex-snapshot
H-NS Mediates the Silencing of Laterally Acquired Genes in Bacteria
inferredcites →https://doi.org/10.4161/21541272.2014.944039openalex-snapshot
Pervasive transcription: detecting functional RNAs in bacteria

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1038/s42003-021-01672-7openalex-snapshot
A multiplex CRISPR interference tool for virulence gene interrogation in Legionella pneumophila
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.