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CRISPRCasdb a successor of CRISPRdb containing CRISPR arrays and cas genes from complete genome sequences, and tools to download and query lists of repeats and spacers
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1007/s00239-004-0046-3openalex-snapshot
Intervening Sequences of Regularly Spaced Prokaryotic Repeats Derive from Foreign Genetic Elements
inferredcites →https://doi.org/10.1007/s00239-005-0223-zopenalex-snapshot
The Repetitive DNA Elements Called CRISPRs and Their Associated Genes: Evidence of Horizontal Transfer Among Prokaryotes
inferredcites →https://doi.org/10.1016/j.mib.2017.05.008openalex-snapshot
Diversity, classification and evolution of CRISPR-Cas systems
inferredcites →https://doi.org/10.1016/j.molcel.2015.10.008openalex-snapshot
Discovery and Functional Characterization of Diverse Class 2 CRISPR-Cas Systems
inferredcites →https://doi.org/10.1016/s0022-2836(05)80360-2openalex-snapshot
Basic Local Alignment Search Tool
inferredcites →https://doi.org/10.1038/nrmicro.2016.184openalex-snapshot
Diversity and evolution of class 2 CRISPR–Cas systems
inferredcites →https://doi.org/10.1038/nrmicro2577openalex-snapshot
Evolution and classification of the CRISPR–Cas systems
inferredcites →https://doi.org/10.1038/nrmicro3569openalex-snapshot
An updated evolutionary classification of CRISPR–Cas systems
inferredcites →https://doi.org/10.1038/s42003-018-0184-6openalex-snapshot
CRISPRminer is a knowledge base for exploring CRISPR-Cas systems in microbe and phage interactions
inferredcites →https://doi.org/10.1046/j.1365-2958.2000.01838.xopenalex-snapshot
Biological significance of a family of regularly spaced repeats in the genomes of Archaea, Bacteria and mitochondria
inferredcites →https://doi.org/10.1046/j.1365-2958.2002.02839.xopenalex-snapshot
Identification of genes that are associated with DNA repeats in prokaryotes
inferredcites →https://doi.org/10.1080/15476286.2018.1493332openalex-snapshot
CRISPR Visualizer: rapid identification and visualization of CRISPR loci via an automated high-throughput processing pipeline
inferredcites →https://doi.org/10.1089/crispr.2017.0022openalex-snapshot
CRISPRdisco: An Automated Pipeline for the Discovery and Analysis of CRISPR-Cas Systems
inferredcites →https://doi.org/10.1093/bioinformatics/btp586openalex-snapshot
CRISPI: a CRISPR interactive database
inferredcites →https://doi.org/10.1093/nar/27.2.573openalex-snapshot
Tandem repeats finder: a program to analyze DNA sequences
inferredcites →https://doi.org/10.1093/nar/29.1.41openalex-snapshot
TIGRFAMs: a protein family resource for the functional identification of proteins
inferredcites →https://doi.org/10.1093/nar/gkh073openalex-snapshot
Database resources of the National Center for Biotechnology Information: update
inferredcites →https://doi.org/10.1093/nar/gkj158openalex-snapshot
Database resources of the National Center for Biotechnology Information
inferredcites →https://doi.org/10.1093/nar/gkm360openalex-snapshot
CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats
inferredcites →https://doi.org/10.1093/nar/gkn228openalex-snapshot
CRISPRcompar: a website to compare clustered regularly interspaced short palindromic repeats
inferredcites →https://doi.org/10.1093/nar/gkt183openalex-snapshot
Crass: identification and reconstruction of CRISPR from unassembled metagenomic data
inferredcites →https://doi.org/10.1093/nar/gku241openalex-snapshot
Classification and evolution of type II CRISPR-Cas systems
inferredcites →https://doi.org/10.1093/nar/gky425openalex-snapshot
CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins
inferredcites →https://doi.org/10.1093/nar/gky995openalex-snapshot
The Pfam protein families database in 2019
inferredcites →https://doi.org/10.1093/nar/gkz915openalex-snapshot
CRISPRCasdb a successor of CRISPRdb containing CRISPR arrays and cas genes from complete genome sequences, and tools to download and query lists of repeats and spacers
inferredcites →https://doi.org/10.1098/rstb.2018.0087openalex-snapshot
Origins and evolution of CRISPR-Cas systems
inferredcites →https://doi.org/10.1099/mic.0.27437-0openalex-snapshot
CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies
inferredcites →https://doi.org/10.1099/mic.0.28048-0openalex-snapshot
Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin
inferredcites →https://doi.org/10.1109/tcbb.2017.2665542openalex-snapshot
HMMCAS: A Web Tool for the Identification and Domain Annotations of CAS Proteins
inferredcites →https://doi.org/10.1111/j.1365-2958.1993.tb00976.xopenalex-snapshot
Nature of DNA polymorphism in the direct repeat cluster of Mycobacterium tuberculosis; application for strain differentiation by a novel typing method
inferredcites →https://doi.org/10.1111/j.1365-2958.1995.mmi_17010085.xopenalex-snapshot
Long stretches of short tandem repeats are present in the largest replicons of the Archaea Haloferax mediterranei and Haloferax volcanii and could be involved in replicon partitioning
inferredcites →https://doi.org/10.1111/j.1462-2920.2007.01444.xopenalex-snapshot
Rapidly evolving CRISPRs implicated in acquired resistance of microorganisms to viruses
inferredcites →https://doi.org/10.1126/science.1138140openalex-snapshot
CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes
inferredcites →https://doi.org/10.1128/jb.171.6.3553-3556.1989openalex-snapshot
Unusual nucleotide arrangement with repeated sequences in the Escherichia coli K-12 chromosome
inferredcites →https://doi.org/10.1128/mbio.01397-17openalex-snapshot
The CRISPR Spacer Space Is Dominated by Sequences from Species-Specific Mobilomes
inferredcites →https://doi.org/10.1186/1471-2105-8-172openalex-snapshot
The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats
inferredcites →https://doi.org/10.1186/1471-2105-8-18openalex-snapshot
PILER-CR: Fast and accurate identification of CRISPR repeats
inferredcites →https://doi.org/10.1186/1471-2105-8-209openalex-snapshot
CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats
inferredcites →https://doi.org/10.1186/s12859-017-1512-4openalex-snapshot
Not all predicted CRISPR–Cas systems are equal: isolated cas genes and classes of CRISPR like elements
inferredcites →https://doi.org/10.1186/s12864-016-2627-0openalex-snapshot
CRISPRDetect: A flexible algorithm to define CRISPR arrays
inferredcites →https://doi.org/10.1186/s13578-019-0298-7openalex-snapshot
CRISPR Cpf1 proteins: structure, function and implications for genome editing
inferredcites →https://doi.org/10.1371/journal.pcbi.0010060openalex-snapshot
A Guild of 45 CRISPR-Associated (Cas) Protein Families and Multiple CRISPR/Cas Subtypes Exist in Prokaryotic Genomes
inferredcites →https://doi.org/10.1371/journal.pone.0110726openalex-snapshot
MacSyFinder: A Program to Mine Genomes for Molecular Systems with an Application to CRISPR-Cas Systems
inferredcites →https://doi.org/10.3390/v10110602openalex-snapshot
CRISPRStudio: A User-Friendly Software for Rapid CRISPR Array Visualization
inferredcites →https://doi.org/10.7554/elife.27601openalex-snapshot
Type III CRISPR-Cas systems can provide redundancy to counteract viral escape from type I systems
inferredcites →https://doi.org/10.7717/peerj.3788openalex-snapshot
MetaCRAST: reference-guided extraction of CRISPR spacers from unassembled metagenomes
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1002/9781683673798.ch1openalex-snapshot
CRISPR‐Cas Systems: Core Features and Common Mechanisms
inferred← citeshttps://doi.org/10.1002/mbo3.1339openalex-snapshot
Bioinformatic survey of CRISPR loci across 15 Serratia species
inferred← citeshttps://doi.org/10.1002/mbo3.70107openalex-snapshot
Genomic and Metabolic Characterization of a Potentially Novel Paenibacillus Species Isolated as a Laboratory Contaminant Growing on Medium Supporting Cotton Tissue Culture
inferred← citeshttps://doi.org/10.1007/978-1-0716-1274-3_7openalex-snapshot
Phageome Analysis of Bifidobacteria-Rich Samples
inferred← citeshttps://doi.org/10.1007/978-1-0716-3838-5_14openalex-snapshot
Comparative Analyses of Bacteriophage Genomes
inferred← citeshttps://doi.org/10.1007/978-1-0716-5408-8_18openalex-snapshot
Artificial Intelligence Applications in Bacteriophage Genomics and Host Interaction
inferred← citeshttps://doi.org/10.1007/978-3-031-06220-9_8openalex-snapshot
Reconciliation with Segmental Duplication, Transfer, Loss and Gain
inferred← citeshttps://doi.org/10.1007/978-981-16-2922-8_19openalex-snapshot
Microbial Genes, Enzymes, and Metabolites: To Improve Rhizosphere and Plant Health Management
inferred← citeshttps://doi.org/10.1007/978-981-16-3997-5_10openalex-snapshot
The CRISPR Technology and Application in Rice
inferred← citeshttps://doi.org/10.1007/s00203-026-05236-3openalex-snapshot
Pseudomonas atacamensis SJA1 enhances root development and phosphorus accumulation in rice under organic fertilization
inferred← citeshttps://doi.org/10.1007/s00438-023-02065-7openalex-snapshot
Characterization and diversity of CRISPR/Cas systems in Klebsiella oxytoca
inferred← citeshttps://doi.org/10.1007/s10142-024-01494-wopenalex-snapshot
Non-coding RNA notations, regulations and interactive resources
inferred← citeshttps://doi.org/10.1007/s10529-024-03516-wopenalex-snapshot
Native CRISPR-Cas-based programmable multiplex gene repression in Klebsiella variicola
inferred← citeshttps://doi.org/10.1007/s12298-023-01397-3openalex-snapshot
3Bs of CRISPR-Cas mediated genome editing in plants: exploring the basics, bioinformatics and biosafety landscape
inferred← citeshttps://doi.org/10.1007/s12539-023-00555-1openalex-snapshot
Analysis of CRISPR-Cas Loci and their Targets in Levilactobacillus brevis
inferred← citeshttps://doi.org/10.1007/s13258-021-01129-5openalex-snapshot
Comparative genomic analysis of Mycoplasma anatis strains
inferred← citeshttps://doi.org/10.1007/s13562-022-00811-3openalex-snapshot
A review on bioinformatics advances in CRISPR-Cas technology
inferred← citeshttps://doi.org/10.1016/b978-0-12-818766-1.00045-3openalex-snapshot
CRISPR-Cas Systems in Starter Cultures
inferred← citeshttps://doi.org/10.1016/b978-0-12-822563-9.00088-3openalex-snapshot
Multiplexing with CRISPR-Cas Arrays
inferred← citeshttps://doi.org/10.1016/b978-0-443-18866-4.00006-7openalex-snapshot
Bacterial identification and diagnosis of bacterial infections through genomics, proteomics, nanotechnology, machine learning, and microelectromechanical systems
inferred← citeshttps://doi.org/10.1016/j.bbagen.2023.130469openalex-snapshot
Differential processing of CRISPR RNA by LinCas5c and LinCas6 of Leptospira
inferred← citeshttps://doi.org/10.1016/j.biochi.2023.07.017openalex-snapshot
CRISPR genotyping methods: Tracing the evolution from spoligotyping to machine learning
inferred← citeshttps://doi.org/10.1016/j.biotechadv.2023.108241openalex-snapshot
Endogenous CRISPR-Cas mediated in situ genome editing: State-of-the-art and the road ahead for engineering prokaryotes
inferred← citeshttps://doi.org/10.1016/j.cell.2025.09.004openalex-snapshot
Functional RNA splitting drove the evolutionary emergence of type V CRISPR-Cas systems from transposons
inferred← citeshttps://doi.org/10.1016/j.celrep.2021.110204openalex-snapshot
Discovery, diversity, and functional associations of crAss-like phages in human gut metagenomes from four Dutch cohorts
inferred← citeshttps://doi.org/10.1016/j.chom.2020.10.010openalex-snapshot
Identification of Natural CRISPR Systems and Targets in the Human Microbiome
inferred← citeshttps://doi.org/10.1016/j.crmicr.2026.100637openalex-snapshot
Genome-based taxonomy and provirus identification in Halococcus from hypersaline environments
inferred← citeshttps://doi.org/10.1016/j.cub.2021.05.068openalex-snapshot
Distribution and phasing of sequence motifs that facilitate CRISPR adaptation
inferred← citeshttps://doi.org/10.1016/j.cub.2021.10.038openalex-snapshot
High viral abundance and low diversity are associated with increased CRISPR-Cas prevalence across microbial ecosystems
inferred← citeshttps://doi.org/10.1016/j.cub.2022.05.021openalex-snapshot
A scaling law in CRISPR repertoire sizes arises from the avoidance of autoimmunity
inferred← citeshttps://doi.org/10.1016/j.ggedit.2022.100018openalex-snapshot
Genome editing and bioinformatics
inferred← citeshttps://doi.org/10.1016/j.heliyon.2023.e17652openalex-snapshot
Arcobacteraceae comparative genome analysis demonstrates genome heterogeneity and reduction in species isolated from animals and associated with human illness
inferred← citeshttps://doi.org/10.1016/j.jmb.2023.167974openalex-snapshot
Ecology and evolution of phages encoding anti-CRISPR proteins
inferred← citeshttps://doi.org/10.1016/j.jtos.2023.05.007openalex-snapshot
Corneal gene therapy: Structural and mechanistic understanding
inferred← citeshttps://doi.org/10.1016/j.micpath.2022.105953openalex-snapshot
Prevalence and heterogeneity of antibiotic resistance genes in Orientia tsutsugamushi and other rickettsial genomes
inferred← citeshttps://doi.org/10.1016/j.tim.2020.05.007openalex-snapshot
Anti-CRISPR Proteins in Archaea
inferred← citeshttps://doi.org/10.1016/j.vetmic.2021.109161openalex-snapshot
Genomic analysis of extra-intestinal Campylobacter jejuni and Campylobacter coli isolated from commercial chickens
inferred← citeshttps://doi.org/10.1016/j.watres.2023.119906openalex-snapshot
CRISPR-Cas phage defense systems and prophages in Candidatus Accumulibacter
inferred← citeshttps://doi.org/10.1021/acs.chemrev.4c00687openalex-snapshot
Synthetic Biology of Plants and Microbes for Agriculture, Environment, and Future Applications
inferred← citeshttps://doi.org/10.1021/acssynbio.6c00386openalex-snapshot
Engineering DNA-Targeting CRISPR and CRISPR-Like Effectors: Advances from Rational Design and High-Throughput Screening to AI-Driven Development
inferred← citeshttps://doi.org/10.1038/s41396-020-0653-zopenalex-snapshot
New virus isolates from Italian hydrothermal environments underscore the biogeographic pattern in archaeal virus communities
inferred← citeshttps://doi.org/10.1038/s41467-023-39964-7openalex-snapshot
Insertion sequence transposition inactivates CRISPR-Cas immunity
inferred← citeshttps://doi.org/10.1038/s41467-024-45257-4openalex-snapshot
Transmission and dynamics of mother-infant gut viruses during pregnancy and early life
inferred← citeshttps://doi.org/10.1038/s41467-024-51695-xopenalex-snapshot
Engineered minimal type I CRISPR-Cas system for transcriptional activation and base editing in human cells
inferred← citeshttps://doi.org/10.1038/s41467-024-53855-5openalex-snapshot
Discovery of deep-sea coral symbionts from a novel clade of marine bacteria with severely reduced genomes
inferred← citeshttps://doi.org/10.1038/s41467-026-69098-5openalex-snapshot
Uncovering Cas9 PAM diversity through metagenomic mining and machine learning
inferred← citeshttps://doi.org/10.1038/s41564-023-01472-1openalex-snapshot
Genomic epidemiology reveals multidrug resistant plasmid spread between Vibrio cholerae lineages in Yemen
inferred← citeshttps://doi.org/10.1038/s41586-021-03951-zopenalex-snapshot
Mechanism for Cas4-assisted directional spacer acquisition in CRISPR–Cas
inferred← citeshttps://doi.org/10.1038/s41586-025-09298-zopenalex-snapshot
Design of highly functional genome editors by modelling CRISPR–Cas sequences
inferred← citeshttps://doi.org/10.1038/s41587-023-01857-xopenalex-snapshot
Evolutionary mining and functional characterization of TnpB nucleases identify efficient miniature genome editors
inferred← citeshttps://doi.org/10.1038/s41598-023-32078-6openalex-snapshot
CRISPR-resolved virus-host interactions in a municipal landfill include non-specific viruses, hyper-targeted viral populations, and interviral conflicts
inferred← citeshttps://doi.org/10.1038/s41598-024-58226-0openalex-snapshot
Discovery and description of novel phage genomes from urban microbiomes sampled by the MetaSUB consortium
inferred← citeshttps://doi.org/10.1038/s43705-022-00135-2openalex-snapshot
Potential metabolic and genetic interaction among viruses, methanogen and methanotrophic archaea, and their syntrophic partners
inferred← citeshttps://doi.org/10.1073/pnas.2525424123openalex-snapshot
Molecular kinetics dictate population dynamics in CRISPR-based plasmid defense
inferred← citeshttps://doi.org/10.1074/jbc.ra120.014099openalex-snapshot
Csx3 is a cyclic oligonucleotide phosphodiesterase associated with type III CRISPR–Cas that degrades the second messenger cA4
inferred← citeshttps://doi.org/10.1089/crispr.2020.29111.cpoopenalex-snapshot
New Insights into CRISPR Arrays
inferred← citeshttps://doi.org/10.1089/crispr.2022.0106openalex-snapshot
Clarifying CRISPR: Why Repeats Identified in the Human Genome Should Not Be Considered CRISPRs
inferred← citeshttps://doi.org/10.1089/phage.2021.0016openalex-snapshot
vHULK, a New Tool for Bacteriophage Host Prediction Based on Annotated Genomic Features and Neural Networks
inferred← citeshttps://doi.org/10.1093/bib/bbaf575openalex-snapshot
CRISPR-GATE: a one-stop repository and guide to computational resources for genome editing experimentation
inferred← citeshttps://doi.org/10.1093/bioinformatics/btad120openalex-snapshot
PhaGAA: an integrated web server platform for phage genome annotation and analysis
inferred← citeshttps://doi.org/10.1093/database/baaa088openalex-snapshot
CRISPR sequences are sometimes erroneously translated and can contaminate public databases with spurious proteins containing spaced repeats
inferred← citeshttps://doi.org/10.1093/femsml/uqaf016openalex-snapshot
Metagenomic CRISPR Array Analysis Tool: a novel graph-based approach to finding CRISPR arrays in metagenomic datasets
inferred← citeshttps://doi.org/10.1093/g3journal/jkaa034openalex-snapshot
Vagococcus fluvialis isolation and sequencing from urine of healthy cattle
inferred← citeshttps://doi.org/10.1093/ismeco/ycad011openalex-snapshot
Diversity of Bathyarchaeia viruses in metagenomes and virus-encoded CRISPR system components
inferred← citeshttps://doi.org/10.1093/ismeco/ycae097openalex-snapshot
Facultative endosymbiosis between cellulolytic protists and methanogenic archaea in the gut of the Formosan termite Coptotermes formosanus
inferred← citeshttps://doi.org/10.1093/ismejo/wrad039openalex-snapshot
CRISPR-Cas in Pseudomonas aeruginosa provides transient population-level immunity against high phage exposures
inferred← citeshttps://doi.org/10.1093/nar/gkab859openalex-snapshot
CRISPR-Cas systems are widespread accessory elements across bacterial and archaeal plasmids
inferred← citeshttps://doi.org/10.1093/nar/gkad1016openalex-snapshot
KnockTF 2.0: a comprehensive gene expression profile database with knockdown/knockout of transcription (co-)factors in multiple species
inferred← citeshttps://doi.org/10.1093/nar/gkad425openalex-snapshot
CRISPRimmunity: an interactive web server for CRISPR-associated Important Molecular events and Modulators Used in geNome edIting Tool identifYing
inferred← citeshttps://doi.org/10.1093/nar/gkae1006openalex-snapshot
AcrIIIA1 is a protein–RNA anti-CRISPR complex that targets core Cas and accessory nucleases
inferred← citeshttps://doi.org/10.1093/nar/gkae772openalex-snapshot
SpacerPlacer: ancestral reconstruction of CRISPR arrays reveals the evolutionary dynamics of spacer deletions
inferred← citeshttps://doi.org/10.1093/nar/gkaf214openalex-snapshot
CASCADE-Cas3 enables highly efficient genome engineering in Streptomyces species
inferred← citeshttps://doi.org/10.1093/nar/gkz1161openalex-snapshot
The 27th annual Nucleic Acids Research database issue and molecular biology database collection
inferred← citeshttps://doi.org/10.1099/ijsem.0.005489openalex-snapshot
Nanobdella aerobiophila gen. nov., sp. nov., a thermoacidophilic, obligate ectosymbiotic archaeon, and proposal of Nanobdellaceae fam. nov., Nanobdellales ord. nov. and Nanobdellia class. nov.
inferred← citeshttps://doi.org/10.1101/2020.01.15.903914openalex-snapshot
TOP the Transcription Orientation Pipeline and its use to investigate the transcription of non-coding regions: assessment with CRISPR direct repeats and intergenic sequences
inferred← citeshttps://doi.org/10.1101/2021.01.04.425308openalex-snapshot
Heterologous autoimmunity and prokaryotic immune defense
inferred← citeshttps://doi.org/10.1101/2021.05.04.442622openalex-snapshot
Comprehensive PAM prediction for CRISPR-Cas systems reveals evidence for spacer sharing, preferred strand targeting and conserved links with CRISPR repeats
inferred← citeshttps://doi.org/10.1101/2021.11.12.468366openalex-snapshot
An interplay between viruses and bacteria associated with marine sponges from the White Sea revealed by metagenomics
inferred← citeshttps://doi.org/10.1101/2022.06.21.496952openalex-snapshot
In silico optimization of RNA-protein interactions for CRISPR-Cas13-based antimicrobials
inferred← citeshttps://doi.org/10.1101/2022.08.24.504966openalex-snapshot
Genomic epidemiology of the cholera outbreak in Yemen reveals the spread of a multi-drug resistance plasmid between diverse lineages of Vibrio cholerae
inferred← citeshttps://doi.org/10.1101/2022.10.12.504627openalex-snapshot
CRISPR-Cas phage defense systems and prophages in Candidatus Accumulibacter
inferred← citeshttps://doi.org/10.1101/2024.04.22.590591openalex-snapshot
Design of highly functional genome editors by modeling the universe of CRISPR-Cas sequences
inferred← citeshttps://doi.org/10.1101/2024.05.23.595542openalex-snapshot
Unveiling the Evolution of CRISPR Spacer Number: A Phylogenetic Analysis of its Correlation with Repeat Characteristics
inferred← citeshttps://doi.org/10.1101/2024.09.02.610847openalex-snapshot
The type III-B CRISPR-Cas System Affects Energy Metabolism and Adaptation in the Archaeon Saccharolobus solfataricus
inferred← citeshttps://doi.org/10.1101/2025.02.26.640264openalex-snapshot
Mammalian Uteri Contain a Diverse Virome: Insights from Healthy Mares
inferred← citeshttps://doi.org/10.1101/2025.04.20.649705openalex-snapshot
Redefining paradigms in the archaeal virus-host arms race
inferred← citeshttps://doi.org/10.1101/405316openalex-snapshot
Transcription Termination and Antitermination of Bacterial CRISPR Arrays
inferred← citeshttps://doi.org/10.1111/1462-2920.15116openalex-snapshot
Harnessing the type I CRISPR‐Cas systems for genome editing in prokaryotes
inferred← citeshttps://doi.org/10.1111/1462-2920.15543openalex-snapshot
Mobile genetic elements mediate the mixotrophic evolution of novel Alicyclobacillus species for acid mine drainage adaptation
inferred← citeshttps://doi.org/10.1111/1462-2920.15615openalex-snapshot
The genetic and ecophysiological diversity of Microcystis
inferred← citeshttps://doi.org/10.1111/1462-2920.70083openalex-snapshot
Large Filamentous Bacteria Isolated From Sulphidic Sediments Reveal Novel Species and Distinct Energy and Defence Mechanisms for Survival
inferred← citeshttps://doi.org/10.1126/science.adi1910openalex-snapshot
Uncovering the functional diversity of rare CRISPR-Cas systems with deep terascale clustering
inferred← citeshttps://doi.org/10.1128/aem.01923-22openalex-snapshot
Application of a CRISPR Sequence-Based Method for a Large-Scale Assessment of Salmonella Serovars in Ontario Poultry Production Environments
inferred← citeshttps://doi.org/10.1128/mbio.00942-23openalex-snapshot
The FHA domain protein ArnA functions as a global DNA damage response repressor in the hyperthermophilic archaeon Saccharolobus islandicus
inferred← citeshttps://doi.org/10.1128/mra.00137-25openalex-snapshot
Chromosomal and extrachromosomal replicons of a multidrug-resistant zoonotic Staphylococcus ureilyticus strain RSM-JSascm isolated from cow milk in Western Uganda, sub-Saharan Africa
inferred← citeshttps://doi.org/10.1128/msphere.00228-25openalex-snapshot
Prevalence, diversity, and parasitism of tailed prophages in Vibrio harveyi
inferred← citeshttps://doi.org/10.1128/msystems.00072-22openalex-snapshot
The Virome of Healthy Honey Bee Colonies: Ubiquitous Occurrence of Known and New Viruses in Bee Populations
inferred← citeshttps://doi.org/10.1128/msystems.00083-22openalex-snapshot
Prediction of Prophages and Their Host Ranges in Pathogenic and Commensal Neisseria Species
inferred← citeshttps://doi.org/10.1128/msystems.00568-24openalex-snapshot
Ecological drivers of CRISPR immune systems
inferred← citeshttps://doi.org/10.1128/msystems.01210-23openalex-snapshot
Characteristics and immune functions of the endogenous CRISPR-Cas systems in myxobacteria
inferred← citeshttps://doi.org/10.1128/msystems.01255-20openalex-snapshot
Evaluation of CRISPR Diversity in the Human Skin Microbiome for Personal Identification
inferred← citeshttps://doi.org/10.1128/spectrum.00104-24openalex-snapshot
CRISPR spacers acquired from plasmids primarily target backbone genes, making them valuable for predicting potential hosts and host range
inferred← citeshttps://doi.org/10.1128/spectrum.02217-23openalex-snapshot
Viral diversity and dynamics and CRISPR-Cas-mediated immunity in a robust alkaliphilic cyanobacterial consortium
inferred← citeshttps://doi.org/10.1128/spectrum.02924-22openalex-snapshot
Pan-Chromosome and Comparative Analysis of Agrobacterium fabrum Reveal Important Traits Concerning the Genetic Diversity, Evolutionary Dynamics, and Niche Adaptation of the Species
inferred← citeshttps://doi.org/10.1134/s0006297921040064openalex-snapshot
Microbial Arsenal of Antiviral Defenses. Part II
inferred← citeshttps://doi.org/10.11606/d.95.2023.tde-09102023-164409openalex-snapshot
Recuperação e caracterização de genomas de bacteriófagos a partir de metagenomas de compostagem
inferred← citeshttps://doi.org/10.11606/t.95.2022.tde-17022022-091454openalex-snapshot
Machine learning prediction in genomic sequences of prokaryotic viruses from metagenomic datasets
inferred← citeshttps://doi.org/10.1186/s12859-022-04716-9openalex-snapshot
CrisprVi: a software for visualizing and analyzing CRISPR sequences of prokaryotes
inferred← citeshttps://doi.org/10.1186/s12864-021-07766-0openalex-snapshot
Genome analysis of Pseudomonas sp. OF001 and Rubrivivax sp. A210 suggests multicopper oxidases catalyze manganese oxidation required for cylindrospermopsin transformation
inferred← citeshttps://doi.org/10.1186/s12864-022-08770-8openalex-snapshot
Diversity and dynamics of the CRISPR-Cas systems associated with Bacteroides fragilis in human population
inferred← citeshttps://doi.org/10.1186/s12864-023-09729-zopenalex-snapshot
A comparison of Oxford nanopore library strategies for bacterial genomics
inferred← citeshttps://doi.org/10.1186/s12967-024-06013-wopenalex-snapshot
Transitioning from wet lab to artificial intelligence: a systematic review of AI predictors in CRISPR
inferred← citeshttps://doi.org/10.1186/s13059-021-02495-9openalex-snapshot
PAM-repeat associations and spacer selection preferences in single and co-occurring CRISPR-Cas systems
inferred← citeshttps://doi.org/10.1186/s13059-021-02566-xopenalex-snapshot
viralFlye: assembling viruses and identifying their hosts from long-read metagenomics data
inferred← citeshttps://doi.org/10.1186/s13062-022-00339-5openalex-snapshot
In silico optimization of RNA–protein interactions for CRISPR-Cas13-based antimicrobials
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1013706openalex-snapshot
An evolutionary approach to predict the orientation of CRISPR arrays
inferred← citeshttps://doi.org/10.1371/journal.pone.0312783openalex-snapshot
Unveiling the endogenous CRISPR-Cas system in Pseudomonas aeruginosa PAO1
inferred← citeshttps://doi.org/10.1515/hsz-2020-0230openalex-snapshot
An RNA-centric view on gut Bacteroidetes
inferred← citeshttps://doi.org/10.17537/2024.19.565openalex-snapshot
Analysis of Prophage Load and cas Genes in the Genomes of Salmonella enterica Serovars Enteritidis, Typhimurium, and Infantis
inferred← citeshttps://doi.org/10.21203/rs.3.rs-6490351/v1openalex-snapshot
Redefining paradigms in the archaeal virus-host arms race
inferred← citeshttps://doi.org/10.21203/rs.3.rs-8280865/v1openalex-snapshot
Association of CRISPR-Cas Systems with Antimicrobial Resistance and MLST Types in Neonatal Invasive Escherichia coli
inferred← citeshttps://doi.org/10.22201/dgtic.26832968e.2026.15.158openalex-snapshot
Aplicación de inteligencia artificial en genómica y metagenómica viral para la clasificación taxonómica y el descubrimiento de nuevas proteínas virales
inferred← citeshttps://doi.org/10.29413/abs.2025-10.1.6openalex-snapshot
The study of potential recombination events in the protein-coding regions of CRISPR-Cas loci in the genomes of different Salmonella enterica serovariants using in silico methods
inferred← citeshttps://doi.org/10.31631/2073-3046-2023-22-6-108-123openalex-snapshot
Heterogeneity of Antibiotic-Resistant Isolates of Listeria Monocytogenes Isolated from Food Products in Moscow
inferred← citeshttps://doi.org/10.31857/s0320972521030076openalex-snapshot
Микробный арсенал противовирусной защиты. Глава I
inferred← citeshttps://doi.org/10.3389/fmicb.2021.656996openalex-snapshot
Identification and Characterization of the CRISPR/Cas System in Staphylococcus aureus Strains From Diverse Sources
inferred← citeshttps://doi.org/10.3389/fmicb.2021.664299openalex-snapshot
Pruning and Tending Immune Memories: Spacer Dynamics in the CRISPR Array
inferred← citeshttps://doi.org/10.3389/fmicb.2021.782757openalex-snapshot
Spontaneous Phage Resistance in Avian Pathogenic Escherichia coli
inferred← citeshttps://doi.org/10.3389/fmicb.2022.909886openalex-snapshot
In silico analysis reveals the co-existence of CRISPR-Cas type I-F1 and type I-F2 systems and its association with restricted phage invasion in Acinetobacter baumannii
inferred← citeshttps://doi.org/10.3389/fmicb.2022.960559openalex-snapshot
Transcriptional analysis of CRISPR I-B arrays of Leptospira interrogans serovar Lai and its processing by Cas6
inferred← citeshttps://doi.org/10.3389/fmicb.2024.1498959openalex-snapshot
Assessing spacer acquisition rates in E. coli type I-E CRISPR arrays
inferred← citeshttps://doi.org/10.3389/fonc.2020.584404openalex-snapshot
In silico Method in CRISPR/Cas System: An Expedite and Powerful Booster
inferred← citeshttps://doi.org/10.3389/fpls.2025.1563711openalex-snapshot
Unlocking the potential of CRISPR tools and databases for precision genome editing
inferred← citeshttps://doi.org/10.3390/antibiotics10111301openalex-snapshot
CRISPR Element Patterns vs. Pathoadaptability of Clinical Pseudomonas aeruginosa Isolates from a Medical Center in Moscow, Russia
inferred← citeshttps://doi.org/10.3390/antibiotics13070604openalex-snapshot
Exploring Weissella confusa W1 and W2 Strains Isolated from Khao-Mahk as Probiotic Candidates: From Phenotypic Traits to Genomic Insights
inferred← citeshttps://doi.org/10.3390/biom10111523openalex-snapshot
Heavily Armed Ancestors: CRISPR Immunity and Applications in Archaea with a Comparative Analysis of CRISPR Types in Sulfolobales
inferred← citeshttps://doi.org/10.3390/biom13020400openalex-snapshot
Regulation of CRISPR-Associated Genes by Rv1776c (CasR) in Mycobacterium tuberculosis
inferred← citeshttps://doi.org/10.3390/biomedicines12071625openalex-snapshot
CRISPR-Cas System, Antimicrobial Resistance, and Enterococcus Genus—A Complicated Relationship
inferred← citeshttps://doi.org/10.3390/genes11111365openalex-snapshot
CRISPR-Cas Diversity in Clinical Salmonella enterica Serovar Typhi Isolates from South Asian Countries
inferred← citeshttps://doi.org/10.3390/genes14091710openalex-snapshot
Depiction of the In Vitro and Genomic Basis of Resistance to Hop and High Hydrostatic Pressure of Lactiplantibacillus plantarum Isolated from Spoiled Beer
inferred← citeshttps://doi.org/10.3390/ijms22116072openalex-snapshot
CRISPR/Cas9: Principle, Applications, and Delivery through Extracellular Vesicles
inferred← citeshttps://doi.org/10.3390/ijms23116171openalex-snapshot
Interaction of Proteins with Inverted Repeats and Cruciform Structures in Nucleic Acids
inferred← citeshttps://doi.org/10.3390/ijms232112766openalex-snapshot
Correlation between CRISPR Loci Diversity in Three Enterobacterial Taxa
inferred← citeshttps://doi.org/10.3390/ijms25105292openalex-snapshot
CRISPR-Cas Systems and Genome Editing: Beginning the Era of CRISPR/Cas Therapies for Humans
inferred← citeshttps://doi.org/10.3390/life12010025openalex-snapshot
An Interplay between Viruses and Bacteria Associated with the White Sea Sponges Revealed by Metagenomics
inferred← citeshttps://doi.org/10.3390/life12030367openalex-snapshot
CRISPR-Cas Systems in Gut Microbiome of Children with Autism Spectrum Disorders
inferred← citeshttps://doi.org/10.3390/microorganisms13051129openalex-snapshot
Comparative Genomic Analysis of Two Vibrio harveyi Strains from Larimichthys crocea with Divergent Virulence Profiles
inferred← citeshttps://doi.org/10.3390/pathogens10020205openalex-snapshot
Genomic and Phenotypic Analysis of Multidrug-Resistant Acinetobacter baumannii Clinical Isolates Carrying Different Types of CRISPR/Cas Systems
inferred← citeshttps://doi.org/10.3390/pathogens10111516openalex-snapshot
Colistin Resistance Onset Strategies and Genomic Mosaicism in Clinical Acinetobacter baumannii Lineages
inferred← citeshttps://doi.org/10.3390/ph16070920openalex-snapshot
CRISPR-Based Gene Editing in Acinetobacter baumannii to Combat Antimicrobial Resistance
inferred← citeshttps://doi.org/10.3390/v14102305openalex-snapshot
Diversity and Ecology of Caudoviricetes Phages with Genome Terminal Repeats in Fecal Metagenomes from Four Dutch Cohorts
inferred← citeshttps://doi.org/10.6084/m9.figshare.16713914openalex-snapshot
Additional file 1 of PAM-repeat associations and spacer selection preferences in single and co-occurring CRISPR-Cas systems
inferred← citeshttps://doi.org/10.6084/m9.figshare.16713932openalex-snapshot
Additional file 6 of PAM-repeat associations and spacer selection preferences in single and co-occurring CRISPR-Cas systems
inferred← citeshttps://doi.org/10.64898/2026.02.16.706169openalex-snapshot
Biological Foundation Models Enable CRISPR Array Detection Without Metagenomic Assembly
inferred← citeshttps://doi.org/10.70675/10cf5616zd69az43f3z9f17z26d9cc89cbcfopenalex-snapshot
Isolation and characterization of hyperthermophilic archaeal viruses
inferred← citeshttps://doi.org/10.7554/elife.58182openalex-snapshot
Transcription termination and antitermination of bacterial CRISPR arrays
inferred← citeshttps://doi.org/10.7554/elife.81692openalex-snapshot
Dynamics of immune memory and learning in bacterial communities
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