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Genomic, transcriptomic, and structural analysis of Pseudomonas virus PA5oct highlights the molecular complexity among Jumbo phages
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Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1006/jmbi.2001.5396openalex-snapshot
The genome of bacteriophage φKZ of Pseudomonas aeruginosa
inferredcites →https://doi.org/10.1007/978-1-4939-7343-9_14openalex-snapshot
Preparing cDNA Libraries from Lytic Phage-Infected Cells for Whole Transcriptome Analysis by RNA-Seq
inferredcites →https://doi.org/10.1007/s00705-013-1718-3openalex-snapshot
Genomic analysis of bacteriophage PBECO4 infecting Escherichia coli O157:H7
inferredcites →https://doi.org/10.1007/s00705-013-1844-yopenalex-snapshot
A giant Pseudomonas phage from Poland
inferredcites →https://doi.org/10.1007/s00705-016-3053-yopenalex-snapshot
Characteristics and complete genome analysis of a novel jumbo phage infecting pathogenic Bacillus pumilus causing ginger rhizome rot disease
inferredcites →https://doi.org/10.1007/s00705-016-3173-4openalex-snapshot
Taxonomy of prokaryotic viruses: 2016 update from the ICTV bacterial and archaeal viruses subcommittee
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Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2017)
inferredcites →https://doi.org/10.1007/s12250-014-3547-2openalex-snapshot
Bacteriophage secondary infection
inferredcites →https://doi.org/10.1016/0022-2836(75)90321-6openalex-snapshot
Structure and physico-chemical properties of bacteriophage G
inferredcites →https://doi.org/10.1016/j.gdata.2016.03.002openalex-snapshot
Complete genome sequence of a giant Vibrio phage ValKK3 infecting Vibrio alginolyticus
inferredcites →https://doi.org/10.1016/j.jmb.2004.12.042openalex-snapshot
Control of Bacteriophage T4 Tail Lysozyme Activity During the Infection Process
inferredcites →https://doi.org/10.1016/j.jmb.2005.07.018openalex-snapshot
A Three-dimensional Cryo-electron Microscopy Structure of the Bacteriophage ϕKZ Head
inferredcites →https://doi.org/10.1016/j.jmb.2005.08.075openalex-snapshot
Genome Comparison of Pseudomonas aeruginosa Large Phages
inferredcites →https://doi.org/10.1016/j.jmb.2006.08.074openalex-snapshot
Mutational Analysis of σ70 Region 4 Needed for Appropriation by the Bacteriophage T4 Transcription Factors AsiA and MotA
inferredcites →https://doi.org/10.1016/j.jmb.2012.01.002openalex-snapshot
Temporal Regulation of Gene Expression of the Escherichia coli Bacteriophage phiEco32
inferredcites →https://doi.org/10.1016/j.molcel.2012.06.013openalex-snapshot
Structural and Mechanistic Basis for the Inhibition of Escherichia coli RNA Polymerase by T7 Gp2
inferredcites →https://doi.org/10.1016/j.pep.2004.09.019openalex-snapshot
Transcription regulation by bacteriophage T4 AsiA
inferredcites →https://doi.org/10.1016/j.vetmic.2011.12.016openalex-snapshot
Complete genome sequence and characterization of a broad-host range T4-like bacteriophage phiAS5 infecting Aeromonas salmonicida subsp. salmonicida
inferredcites →https://doi.org/10.1016/j.virol.2007.06.043openalex-snapshot
Complete genomic sequence and mass spectrometric analysis of highly diverse, atypical Bacillus thuringiensis phage 0305ϕ8–36
inferredcites →https://doi.org/10.1016/j.virol.2008.04.004openalex-snapshot
Characterization of Pseudomonas chlororaphis myovirus 201ϕ2-1 via genomic sequencing, mass spectrometry, and electron microscopy
inferredcites →https://doi.org/10.1016/j.virol.2009.11.043openalex-snapshot
A jumbo phage infecting the phytopathogen Ralstonia solanacearum defines a new lineage of the Myoviridae family
inferredcites →https://doi.org/10.1016/j.virol.2012.09.030openalex-snapshot
Identification of EPS-degrading activity within the tail spikes of the novel Pseudomonas putida phage AF
inferredcites →https://doi.org/10.1016/j.virol.2012.10.021openalex-snapshot
Host RNA polymerase inhibitors encoded by ϕKMV-like phages of pseudomonas
inferredcites →https://doi.org/10.1016/j.virol.2014.05.003openalex-snapshot
Supersize me: Cronobacter sakazakii phage GAP32
inferredcites →https://doi.org/10.1016/j.virol.2015.02.039openalex-snapshot
Origins and evolution of viruses of eukaryotes: The ultimate modularity
inferredcites →https://doi.org/10.1016/j.virol.2016.03.028openalex-snapshot
Two asian jumbo phages, ϕRSL2 and ϕRSF1, infect Ralstonia solanacearum and show common features of ϕKZ-related phages
inferredcites →https://doi.org/10.1016/j.virol.2016.04.030openalex-snapshot
The genome of AR9, a giant transducing Bacillus phage encoding two multisubunit RNA polymerases
inferredcites →https://doi.org/10.1016/s1534-5807(02)00295-2openalex-snapshot
Pseudomonas aeruginosa Anaerobic Respiration in Biofilms
inferredcites →https://doi.org/10.1038/ismej.2016.89openalex-snapshot
iVirus: facilitating new insights in viral ecology with software and community data sets imbedded in a cyberinfrastructure
inferredcites →https://doi.org/10.1038/ismej.2017.63openalex-snapshot
Comparative transcriptomics analyses reveal the conservation of an ancestral infectious strategy in two bacteriophage genera
inferredcites →https://doi.org/10.1038/srep28115openalex-snapshot
A proposed integrated approach for the preclinical evaluation of phage therapy in Pseudomonas infections
inferredcites →https://doi.org/10.1073/pnas.0907908107openalex-snapshot
T7 phage protein Gp2 inhibits the Escherichia coli RNA polymerase by antagonizing stable DNA strand separation near the transcription start site
inferredcites →https://doi.org/10.1073/pnas.1314576110openalex-snapshot
Phage T7 Gp2 inhibition of Escherichia coli RNA polymerase involves misappropriation of σ 70 domain 1.1
inferredcites →https://doi.org/10.1074/mcp.m900488-mcp200openalex-snapshot
Proteome of the Large Pseudomonas Myovirus 201φ2-1
inferredcites →https://doi.org/10.1093/gbe/evu129openalex-snapshot
Composite Conserved Promoter–Terminator Motifs (PeSLs) that Mediate Modular Shuffling in the Diverse T4-Like Myoviruses
inferredcites →https://doi.org/10.1093/nar/26.4.1107openalex-snapshot
GeneMark.hmm: new solutions for gene finding
inferredcites →https://doi.org/10.1093/nar/29.12.2607openalex-snapshot
GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions
inferredcites →https://doi.org/10.1093/nar/gkq1172openalex-snapshot
Database resources of the National Center for Biotechnology Information
inferredcites →https://doi.org/10.1093/nar/gku080openalex-snapshot
A bacteriophage transcription regulator inhibits bacterial transcription initiation by σ-factor displacement
inferredcites →https://doi.org/10.1093/nar/gkw656openalex-snapshot
Visualizing the phage T4 activated transcription complex of DNA and E. coli RNA polymerase
inferredcites →https://doi.org/10.1099/mic.0.044701-0openalex-snapshot
The Pseudomonas aeruginosa generalized transducing phage φPA3 is a new member of the φKZ-like group of ‘jumbo’ phages, and infects model laboratory strains and clinical isolates from cystic fibrosis patients
inferredcites →https://doi.org/10.1099/mic.0.26443-0openalex-snapshot
Alterations in the formation of lipopolysaccharide and membrane vesicles on the surface of Pseudomonas aeruginosa PAO1 under oxygen stress conditions
inferredcites →https://doi.org/10.1099/mic.0.28265-0openalex-snapshot
Yersiniophage ϕR1-37 is a tailed bacteriophage having a 270 kb DNA genome with thymidine replaced by deoxyuridine
inferredcites →https://doi.org/10.1101/248849openalex-snapshot
Comparative transcriptomics reveals a conserved Bacterial Adaptive Phage Response (BAPR) to viral predation
inferredcites →https://doi.org/10.1101/405027openalex-snapshot
Pseudomonas aeruginosa PA5oct jumbo phage impacts planktonic and biofilm population and reduces its host virulence
inferredcites →https://doi.org/10.1101/gad.233916.113openalex-snapshot
Structural basis for promoter specificity switching of RNA polymerase by a phage factor
inferredcites →https://doi.org/10.1111/1574-6968.12319openalex-snapshot
The genome of the Erwinia amylovora phage PhiEaH1 reveals greater diversity and broadens the applicability of phages for the treatment of fire blight
inferredcites →https://doi.org/10.1111/j.1462-2920.2009.02030.xopenalex-snapshot
Comparative analysis of the widespread and conserved PB1‐like viruses infecting Pseudomonas aeruginosa
inferredcites →https://doi.org/10.1111/j.1462-2920.2010.02280.xopenalex-snapshot
Genomic analysis of oceanic cyanobacterial myoviruses compared with T4‐like myoviruses from diverse hosts and environments
inferredcites →https://doi.org/10.1126/science.1214120openalex-snapshot
Bubblegrams Reveal the Inner Body of Bacteriophage ϕKZ
inferredcites →https://doi.org/10.1128/aac.03560-14openalex-snapshot
Identification of Capsular Types in Carbapenem-Resistant Klebsiella pneumoniae Strains by wzc Sequencing and Implications for Capsule Depolymerase Treatment
inferredcites →https://doi.org/10.1128/aem.01197-13openalex-snapshot
Lytic Infection of Lactococcus lactis by Bacteriophages Tuc2009 and c2 Triggers Alternative Transcriptional Host Responses
inferredcites →https://doi.org/10.1128/aem.01827-15openalex-snapshot
A Novel Bacteriophage Targeting Cronobacter sakazakii Is a Potential Biocontrol Agent in Foods
inferredcites →https://doi.org/10.1128/aem.45.3.1049-1059.1983openalex-snapshot
Sewage coliphages studied by electron microscopy
inferredcites →https://doi.org/10.1128/aem.45.5.1670-1676.1983openalex-snapshot
Isolation and Partial Characterization of Two Aeromonas hydrophila Bacteriophages
inferredcites →https://doi.org/10.1128/genomea.00413-14openalex-snapshot
Complete Genome Sequence of Erwinia amylovora Bacteriophage vB_EamM_Ea35-70
inferredcites →https://doi.org/10.1128/genomea.00431-16openalex-snapshot
Genome Sequence of Jumbo Phage vB_AbaM_ME3 of Acinetobacter baumanni
inferredcites →https://doi.org/10.1128/genomea.00598-13openalex-snapshot
The Draft Genome Sequence of Sphingomonas paucimobilis Strain HER1398 ( Proteobacteria ), Host to the Giant PAU Phage, Indicates That It Is a Member of the Genus Sphingobacterium ( Bacteroidetes )
inferredcites →https://doi.org/10.1128/genomea.00929-13openalex-snapshot
Complete Genome Sequence of the Novel Giant Pseudomonas Phage PaBG
inferredcites →https://doi.org/10.1128/genomea.00931-17openalex-snapshot
Genome Sequences of 19 Novel Erwinia amylovora Bacteriophages
inferredcites →https://doi.org/10.1128/jb.00162-07openalex-snapshot
Membrane-Bound Nitrate Reductase Is Required for Anaerobic Growth in Cystic Fibrosis Sputum
inferredcites →https://doi.org/10.1128/jb.00499-13openalex-snapshot
Phage-Encoded Inhibitor of Staphylococcus aureus Transcription Exerts Context-Dependent Effects on Promoter Function in a Modified Escherichia coli-Based Transcription System
inferredcites →https://doi.org/10.1128/jb.00831-06openalex-snapshot
Genomic Analysis of Pseudomonas aeruginosa Phages LKD16 and LKA1: Establishment of the φKMV Subgroup within the T7 Supergroup
inferredcites →https://doi.org/10.1128/jb.01441-07openalex-snapshot
The Genome and Structural Proteome of YuA, a New Pseudomonas aeruginosa Phage Resembling M6
inferredcites →https://doi.org/10.1128/jb.182.18.5114-5120.2000openalex-snapshot
Bacteriophage φYeO3-12, Specific for Yersinia enterocolitica Serotype O:3, Is Related to Coliphages T3 and T7
inferredcites →https://doi.org/10.1128/jb.185.17.5220-5233.2003openalex-snapshot
Complete Genome Sequence of the Broad-Host-Range Vibriophage KVP40: Comparative Genomics of a T4-Related Bacteriophage
inferredcites →https://doi.org/10.1128/jb.186.14.4466-4475.2004openalex-snapshot
Identification ofpsl, a Locus Encoding a Potential Exopolysaccharide That Is Essential forPseudomonas aeruginosaPAO1 Biofilm Formation
inferredcites →https://doi.org/10.1128/jb.188.3.1184-1187.2006openalex-snapshot
Comparative Genomic Analysis of 18 Pseudomonas aeruginosa Bacteriophages
inferredcites →https://doi.org/10.1128/jb.86.3.452-461.1963openalex-snapshot
TRANSDUCTION OF BACILLUS LICHENIFORMIS AND BACILLUS SUBTILIS BY EACH OF TWO PHAGES
inferredcites →https://doi.org/10.1128/jvi.00275-11openalex-snapshot
Genetic Response to Bacteriophage Infection in Lactococcus lactis Reveals a Four-Strand Approach Involving Induction of Membrane Stress Proteins, d -Alanylation of the Cell Wall, Maintenance of Proton Motive Force, and Energy Conservation
inferredcites →https://doi.org/10.1128/jvi.00641-12openalex-snapshot
Complete Genome Sequence of the Giant Pseudomonas Phage Lu11
inferredcites →https://doi.org/10.1128/jvi.01340-15openalex-snapshot
Dark Matter of the Biosphere: the Amazing World of Bacteriophage Diversity
inferredcites →https://doi.org/10.1128/jvi.01347-14openalex-snapshot
Development of Giant Bacteriophage ϕKZ Is Independent of the Host Transcription Apparatus
inferredcites →https://doi.org/10.1128/jvi.01870-12openalex-snapshot
Complete Genomic Sequence of Erwinia amylovora Phage PhiEaH2
inferredcites →https://doi.org/10.1128/jvi.01882-12openalex-snapshot
Complete Genome Sequence of Aeromonas hydrophila Phage CC2
inferredcites →https://doi.org/10.1128/jvi.01930-07openalex-snapshot
Global Transcriptional Responses of Pseudomonas aeruginosa to Phage PRR1 Infection
inferredcites →https://doi.org/10.1128/jvi.02656-13openalex-snapshot
Phylogenomic Network and Comparative Genomics Reveal a Diverged Member of the ϕKZ-Related Group, Marine Vibrio Phage ϕJM-2012
inferredcites →https://doi.org/10.1128/jvi.06330-11openalex-snapshot
Complete Genome Sequence of the Giant Virus OBP and Comparative Genome Analysis of the Diverse ϕKZ-Related Phages
inferredcites →https://doi.org/10.1128/jvi.06344-11openalex-snapshot
Complete Genome Sequence of Salmonella Bacteriophage SPN3US
inferredcites →https://doi.org/10.1128/jvi.45.1.367-374.1983openalex-snapshot
Substrate specificity of two bacteriophage-associated endo-N-acetylneuraminidases
inferredcites →https://doi.org/10.1128/mbio.00601-13openalex-snapshot
The Novel Human Influenza A(H7N9) Virus Is Naturally Adapted to Efficient Growth in Human Lung Tissue
inferredcites →https://doi.org/10.1128/mbio.02041-16openalex-snapshot
Transcription Profiling ofBacillus subtilisCells Infected with AR9, a Giant Phage Encoding Two Multisubunit RNA Polymerases
inferredcites →https://doi.org/10.1146/annurev-genet-102108-134255openalex-snapshot
Mimivirus and its Virophage
inferredcites →https://doi.org/10.1186/1471-2164-13-224openalex-snapshot
Genome-wide characterization of vibrio phage ϕpp2 with unique arrangements of the mob-like genes
inferredcites →https://doi.org/10.1186/1471-2164-13-542openalex-snapshot
The Caulobacter crescentus phage phiCbK: genomics of a canonical phage
inferredcites →https://doi.org/10.1186/1743-422x-4-21openalex-snapshot
Propagating the missing bacteriophages: a large bacteriophage in a new class.
inferredcites →https://doi.org/10.1186/1743-422x-7-292openalex-snapshot
Genomes of the T4-related bacteriophages as windows on microbial genome evolution
inferredcites →https://doi.org/10.1186/s12864-016-3286-xopenalex-snapshot
Genomic differentiation among wild cyanophages despite widespread horizontal gene transfer
inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
inferredcites →https://doi.org/10.1371/journal.pbio.0030144openalex-snapshot
Three Prochlorococcus Cyanophage Genomes: Signature Features and Ecological Interpretations
inferredcites →https://doi.org/10.1371/journal.pgen.1006134openalex-snapshot
Next-Generation “-omics” Approaches Reveal a Massive Alteration of Host RNA Metabolism during Bacteriophage Infection of Pseudomonas aeruginosa
inferredcites →https://doi.org/10.1371/journal.pone.0060717openalex-snapshot
Klebsiella Phage vB_KleM-RaK2 — A Giant Singleton Virus of the Family Myoviridae
inferredcites →https://doi.org/10.1371/journal.pone.0127603openalex-snapshot
Characterization of the Newly Isolated Lytic Bacteriophages KTN6 and KT28 and Their Efficacy against Pseudomonas aeruginosa Biofilm
inferredcites →https://doi.org/10.1371/journal.ppat.1000354openalex-snapshot
Assembly and Development of the Pseudomonas aeruginosa Biofilm Matrix
inferredcites →https://doi.org/10.3389/fmicb.2016.00745openalex-snapshot
Proteomic Analysis of a Novel Bacillus Jumbo Phage Revealing Glycoside Hydrolase As Structural Component
inferredcites →https://doi.org/10.3389/fmicb.2017.00403openalex-snapshot
Jumbo Bacteriophages: An Overview
inferredcites →https://doi.org/10.3390/v8040111openalex-snapshot
RNA-Sequencing Reveals the Progression of Phage-Host Interactions between φR1-37 and Yersinia enterocolitica
inferredcites →https://doi.org/10.3934/microbiol.2017.2.186openalex-snapshot
Phage “delay” towards enhancing bacterial escape from biofilms: a more comprehensive way of viewing resistance to bacteriophages
inferredcites →https://doi.org/10.4161/bioe.32110openalex-snapshot
Transcription regulation mechanisms of bacteriophages
inferredcites →https://doi.org/10.7717/peerj.3243openalex-snapshot
vConTACT: an iVirus tool to classify double-stranded DNA viruses that infect Archaea and Bacteria
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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A Family of Viral Satellites Manipulates Invading Virus Gene Expression and Can Affect Cholera Toxin Mobilization
inferred← citeshttps://doi.org/10.3389/fmicb.2021.741600openalex-snapshot
Biological and Molecular Characterization of a Jumbo Bacteriophage Infecting Plant Pathogenic Ralstonia solanacearum Species Complex Strains
inferred← citeshttps://doi.org/10.3390/v12070721openalex-snapshot
Pseudomonas Phage PaBG—A Jumbo Member of an Old Parasite Family
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