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NUCOME : A Comprehensive Database of Nucleosome Organizations in Mammalian Genomes

https://doi.org/10.1101/414094
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/j.cell.2015.11.050openalex-snapshot
Cell-free DNA Comprises an In Vivo Nucleosome Footprint that Informs Its Tissues-Of-Origin
inferredcites →https://doi.org/10.1016/j.cell.2016.09.045openalex-snapshot
Genomic Nucleosome Organization Reconstituted with Pure Proteins
inferredcites →https://doi.org/10.1016/j.cell.2016.10.049openalex-snapshot
Insights into Nucleosome Organization in Mouse Embryonic Stem Cells through Chemical Mapping
inferredcites →https://doi.org/10.1016/j.celrep.2014.09.048openalex-snapshot
Changes in Nucleosome Occupancy Associated with Metabolic Alterations in Aged Mammalian Liver
inferredcites →https://doi.org/10.1016/j.celrep.2016.10.011openalex-snapshot
Widespread Chromatin Accessibility at Repetitive Elements Links Stem Cells with Human Cancer
inferredcites →https://doi.org/10.1016/j.gde.2008.01.007openalex-snapshot
ATP-dependent chromatin remodeling enzymes: two heads are not better, just different
inferredcites →https://doi.org/10.1016/j.tibs.2014.10.004openalex-snapshot
Transcribing through the nucleosome
inferredcites →https://doi.org/10.1016/j.tig.2012.02.005openalex-snapshot
Overcoming the nucleosome barrier during transcript elongation
inferredcites →https://doi.org/10.1038/nature10002openalex-snapshot
Determinants of nucleosome organization in primary human cells
inferredcites →https://doi.org/10.1038/ncomms5719openalex-snapshot
Nucleosomal occupancy changes locally over key regulatory regions during cell differentiation and reprogramming
inferredcites →https://doi.org/10.1038/nrg3788openalex-snapshot
Identifying and mitigating bias in next-generation sequencing methods for chromatin biology
inferredcites →https://doi.org/10.1038/nrm.2017.47openalex-snapshot
Understanding nucleosome dynamics and their links to gene expression and DNA replication
inferredcites →https://doi.org/10.1038/nsmb.2060openalex-snapshot
The nucleosome map of the mammalian liver
inferredcites →https://doi.org/10.1038/nsmb.2419openalex-snapshot
Genome-wide nucleosome positioning during embryonic stem cell development
inferredcites →https://doi.org/10.1038/srep17691openalex-snapshot
Dynamically reorganized chromatin is the key for the reprogramming of somatic cells to pluripotent cells
inferredcites →https://doi.org/10.1038/srep19620openalex-snapshot
Exploration of nucleosome positioning patterns in transcription factor function
inferredcites →https://doi.org/10.1073/pnas.1424804112openalex-snapshot
MPE-seq, a new method for the genome-wide analysis of chromatin structure
inferredcites →https://doi.org/10.1073/pnas.1505909112openalex-snapshot
MeCP2 binds to non-CG methylated DNA as neurons mature, influencing transcription and the timing of onset for Rett syndrome
inferredcites →https://doi.org/10.1093/bioinformatics/btr279openalex-snapshot
BINOCh: binding inference from nucleosome occupancy changes
inferredcites →https://doi.org/10.1093/nar/gkw327openalex-snapshot
Setd1a and NURF mediate chromatin dynamics and gene regulation during erythroid lineage commitment and differentiation
inferredcites →https://doi.org/10.1093/nar/gkw983openalex-snapshot
Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse
inferredcites →https://doi.org/10.1101/gad.253534.114openalex-snapshot
Suppression of pervasive noncoding transcription in embryonic stem cells by esBAF
inferredcites →https://doi.org/10.1101/gr.078261.108openalex-snapshot
A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome
inferredcites →https://doi.org/10.1101/gr.164418.113openalex-snapshot
Nucleosome repositioning links DNA (de)methylation and differential CTCF binding during stem cell development
inferredcites →https://doi.org/10.1111/j.1474-9726.2010.00617.xopenalex-snapshot
Epigenetic changes play critical role in age‐associated dysfunctions of the liver
inferredcites →https://doi.org/10.1146/annurev-biophys-051013-023114openalex-snapshot
Mechanisms Underlying Nucleosome Positioning In Vivo
inferredcites →https://doi.org/10.1186/s13059-016-0897-0openalex-snapshot
GATA3-dependent cellular reprogramming requires activation-domain dependent recruitment of a chromatin remodeler
inferredcites →https://doi.org/10.1371/journal.pbio.0050201openalex-snapshot
Aging Hematopoietic Stem Cells Decline in Function and Exhibit Epigenetic Dysregulation
inferredcites →https://doi.org/10.1371/journal.pone.0136314openalex-snapshot
Nucleosome Organization in Human Embryonic Stem Cells
inferredcites →https://doi.org/10.1371/journal.pone.0182771openalex-snapshot
CAM: A quality control pipeline for MNase-seq data
inferredcites →https://doi.org/10.18632/oncotarget.6811openalex-snapshot
Comprehensive nucleosome mapping of the human genome in cancer progression
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