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Dynamically reorganized chromatin is the key for the reprogramming of somatic cells to pluripotent cells

https://doi.org/10.1038/srep17691
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/stem.1169openalex-snapshot
Concise Review: Chromatin and Genome Organization in Reprogramming
inferredcites →https://doi.org/10.1016/j.cell.2006.02.041openalex-snapshot
A Bivalent Chromatin Structure Marks Key Developmental Genes in Embryonic Stem Cells
inferredcites →https://doi.org/10.1016/j.cell.2006.07.024openalex-snapshot
Induction of Pluripotent Stem Cells from Mouse Embryonic and Adult Fibroblast Cultures by Defined Factors
inferredcites →https://doi.org/10.1016/j.cell.2007.01.015openalex-snapshot
The Role of Chromatin during Transcription
inferredcites →https://doi.org/10.1016/j.cell.2007.02.005openalex-snapshot
Chromatin Modifications and Their Function
inferredcites →https://doi.org/10.1016/j.cell.2007.05.009openalex-snapshot
High-Resolution Profiling of Histone Methylations in the Human Genome
inferredcites →https://doi.org/10.1016/j.cell.2008.02.022openalex-snapshot
Dynamic Regulation of Nucleosome Positioning in the Human Genome
inferredcites →https://doi.org/10.1016/j.cell.2012.03.026openalex-snapshot
The Transcriptional and Epigenomic Foundations of Ground State Pluripotency
inferredcites →https://doi.org/10.1016/j.cell.2012.08.023openalex-snapshot
Single-Cell Expression Analyses during Cellular Reprogramming Reveal an Early Stochastic and a Late Hierarchic Phase
inferredcites →https://doi.org/10.1016/j.cell.2012.11.018openalex-snapshot
Foxa2 and H2A.Z Mediate Nucleosome Depletion during Embryonic Stem Cell Differentiation
inferredcites →https://doi.org/10.1016/j.gde.2004.04.015openalex-snapshot
Advances in chromatin remodeling and human disease
inferredcites →https://doi.org/10.1016/j.gde.2010.06.002openalex-snapshot
Parallel gateways to pluripotency: open chromatin in stem cells and development
inferredcites →https://doi.org/10.1016/j.stem.2007.08.003openalex-snapshot
Whole-Genome Analysis of Histone H3 Lysine 4 and Lysine 27 Methylation in Human Embryonic Stem Cells
inferredcites →https://doi.org/10.1016/j.stem.2009.12.001openalex-snapshot
Vitamin C Enhances the Generation of Mouse and Human Induced Pluripotent Stem Cells
inferredcites →https://doi.org/10.1016/j.stem.2010.04.014openalex-snapshot
A Mesenchymal-to-Epithelial Transition Initiates and Is Required for the Nuclear Reprogramming of Mouse Fibroblasts
inferredcites →https://doi.org/10.1016/j.stem.2011.10.005openalex-snapshot
The Histone Demethylases Jhdm1a/1b Enhance Somatic Cell Reprogramming in a Vitamin-C-Dependent Manner
inferredcites →https://doi.org/10.1016/j.tibs.2004.03.008openalex-snapshot
New insights into TGF-β–Smad signalling
inferredcites →https://doi.org/10.1016/j.tips.2015.02.010openalex-snapshot
Featuring the nucleosome surface as a therapeutic target
inferredcites →https://doi.org/10.1016/s0092-8674(00)81958-3openalex-snapshot
Twenty-Five Years of the Nucleosome, Fundamental Particle of the Eukaryote Chromosome
inferredcites →https://doi.org/10.1016/s0959-437x(02)00279-4openalex-snapshot
Histone modifications in transcriptional regulation
inferredcites →https://doi.org/10.1016/s0959-437x(02)00293-9openalex-snapshot
Chromatin and transcription: where do we go from here?
inferredcites →https://doi.org/10.1038/292154a0openalex-snapshot
Establishment in culture of pluripotential cells from mouse embryos
inferredcites →https://doi.org/10.1038/nature02625openalex-snapshot
Epigenetics in human disease and prospects for epigenetic therapy
inferredcites →https://doi.org/10.1038/nature08212openalex-snapshot
Chd1 regulates open chromatin and pluripotency of embryonic stem cells
inferredcites →https://doi.org/10.1038/nature14046openalex-snapshot
Genome-wide characterization of the routes to pluripotency
inferredcites →https://doi.org/10.1038/nature14047openalex-snapshot
Divergent reprogramming routes lead to alternative stem-cell states
inferredcites →https://doi.org/10.1038/nbt.1621openalex-snapshot
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
inferredcites →https://doi.org/10.1038/nbt1279openalex-snapshot
High-throughput mapping of the chromatin structure of human promoters
inferredcites →https://doi.org/10.1038/ncb1403openalex-snapshot
Chromatin signatures of pluripotent cell lines
inferredcites →https://doi.org/10.1038/ncb2768openalex-snapshot
Proteomic and genomic approaches reveal critical functions of H3K9 methylation and heterochromatin protein-1γ in reprogramming to pluripotency
inferredcites →https://doi.org/10.1038/ncomms5719openalex-snapshot
Nucleosomal occupancy changes locally over key regulatory regions during cell differentiation and reprogramming
inferredcites →https://doi.org/10.1038/ncomms6522openalex-snapshot
Small RNA changes en route to distinct cellular states of induced pluripotency
inferredcites →https://doi.org/10.1038/ncomms6619openalex-snapshot
An epigenomic roadmap to induced pluripotency reveals DNA methylation as a reprogramming modulator
inferredcites →https://doi.org/10.1038/ncomms7008openalex-snapshot
Dppa3 expression is critical for generation of fully reprogrammed iPS cells and maintenance of Dlk1-Dio3 imprinting
inferredcites →https://doi.org/10.1038/ncomms8329openalex-snapshot
CD24 tracks divergent pluripotent states in mouse and human cells
inferredcites →https://doi.org/10.1038/ng.2491openalex-snapshot
H3K9 methylation is a barrier during somatic cell reprogramming into iPSCs
inferredcites →https://doi.org/10.1038/ng.2807openalex-snapshot
Vitamin C modulates TET1 function during somatic cell reprogramming
inferredcites →https://doi.org/10.1038/ng.857openalex-snapshot
CTCF-mediated functional chromatin interactome in pluripotent cells
inferredcites →https://doi.org/10.1038/ng2117openalex-snapshot
A high-resolution atlas of nucleosome occupancy in yeast
inferredcites →https://doi.org/10.1038/nprot.2008.211openalex-snapshot
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
inferredcites →https://doi.org/10.1038/nrg3163openalex-snapshot
Metazoan promoters: emerging characteristics and insights into transcriptional regulation
inferredcites →https://doi.org/10.1038/nrm2262openalex-snapshot
Extracellular control of TGFβ signalling in vascular development and disease
inferredcites →https://doi.org/10.1038/nrm3036openalex-snapshot
Open chromatin in pluripotency and reprogramming
inferredcites →https://doi.org/10.1038/nsmb.2419openalex-snapshot
Genome-wide nucleosome positioning during embryonic stem cell development
inferredcites →https://doi.org/10.1073/pnas.78.12.7634openalex-snapshot
Isolation of a pluripotent cell line from early mouse embryos cultured in medium conditioned by teratocarcinoma stem cells.
inferredcites →https://doi.org/10.1074/jbc.m113.486175openalex-snapshot
Ribosomal RNA Gene Transcription Mediated by the Master Genome Regulator Protein CCCTC-binding Factor (CTCF) Is Negatively Regulated by the Condensin Complex
inferredcites →https://doi.org/10.1093/bioinformatics/btn119openalex-snapshot
GeneTrack—a genomic data processing and visualization framework
inferredcites →https://doi.org/10.1093/bioinformatics/btp120openalex-snapshot
TopHat: discovering splice junctions with RNA-Seq
inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot
BEDTools: a flexible suite of utilities for comparing genomic features
inferredcites →https://doi.org/10.1101/gad.1615707openalex-snapshot
Open conformation chromatin and pluripotency: Figure 1.
inferredcites →https://doi.org/10.1101/gad.2037511openalex-snapshot
CpG islands and the regulation of transcription
inferredcites →https://doi.org/10.1101/gr.164418.113openalex-snapshot
Nucleosome repositioning links DNA (de)methylation and differential CTCF binding during stem cell development
inferredcites →https://doi.org/10.1101/gr.5560806openalex-snapshot
Flexibility and constraint in the nucleosome core landscape of Caenorhabditis elegans chromatin
inferredcites →https://doi.org/10.1111/j.1432-0436.2007.00257.xopenalex-snapshot
Patterning of mouse embryonic stem cell-derived pan-mesoderm by Activin A/Nodal and Bmp4 signaling requires Fibroblast Growth Factor activity
inferredcites →https://doi.org/10.1126/science.1112178openalex-snapshot
Genome-Scale Identification of Nucleosome Positions in S. cerevisiae
inferredcites →https://doi.org/10.1186/1471-2105-7-446openalex-snapshot
CpGcluster: a distance-based algorithm for CpG-island detection
inferredcites →https://doi.org/10.1186/gb-2009-10-3-r25openalex-snapshot
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
inferredcites →https://doi.org/10.1186/s12915-014-0109-xopenalex-snapshot
Nucleosome organizations in induced pluripotent stem cells reprogrammed from somatic cells belonging to three different germ layers
inferredcites →https://doi.org/10.1371/journal.pbio.0060253openalex-snapshot
Promotion of Reprogramming to Ground State Pluripotency by Signal Inhibition
inferredcites →https://doi.org/10.1371/journal.pone.0026706openalex-snapshot
Mechanisms for Vascular Cell Adhesion Molecule-1 Activation of ERK1/2 during Leukocyte Transendothelial Migration
inferredcites →https://doi.org/10.2217/epi.10.23openalex-snapshot
Nucleosome Positioning, Gene Regulation And Disease

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.4635259openalex-extracted
Spatial Distribution of Maternal Factors in Pig Mature Oocytes
inferred← citeshttps://doi.org/10.1007/s00018-017-2586-xopenalex-snapshot
Small molecules for reprogramming and transdifferentiation
inferred← citeshttps://doi.org/10.1007/s12015-016-9682-4openalex-snapshot
Epigenetic Control of Reprogramming and Transdifferentiation by Histone Modifications
inferred← citeshttps://doi.org/10.1016/b978-0-12-822228-7.00006-0openalex-snapshot
Rabbit induced pluripotent stem cells: the challenges
inferred← citeshttps://doi.org/10.1016/j.reprotox.2020.09.011openalex-snapshot
Vitamin C protects early mouse embryos against juglone toxicity
inferred← citeshttps://doi.org/10.1016/j.stemcr.2017.06.004openalex-snapshot
Dynamic Reorganization of Nucleosome Positioning in Somatic Cells after Transfer into Porcine Enucleated Oocytes
inferred← citeshttps://doi.org/10.1038/s41467-018-03781-0openalex-snapshot
PCGF5 is required for neural differentiation of embryonic stem cells
inferred← citeshttps://doi.org/10.1038/s41467-018-07687-9openalex-snapshot
Binding of HMGN proteins to cell specific enhancers stabilizes cell identity
inferred← citeshttps://doi.org/10.1038/s41467-019-08949-wopenalex-snapshot
An alternative CTCF isoform antagonizes canonical CTCF occupancy and changes chromatin architecture to promote apoptosis
inferred← citeshttps://doi.org/10.1038/s41598-020-60680-5openalex-snapshot
Acceleration of somatic cell reprogramming into the induced pluripotent stem cell using a mycosporine-like amino acid, Porphyra 334
inferred← citeshttps://doi.org/10.1038/srep26711openalex-snapshot
The Maternal Effect Genes UTX and JMJD3 Play Contrasting Roles in Mus musculus Preimplantation Embryo Development
inferred← citeshttps://doi.org/10.1051/e3sconf/202124503043openalex-snapshot
Research Progress on Tissue Engineering of Main Tissues and Organs of Human Body
inferred← citeshttps://doi.org/10.1073/pnas.1704211114openalex-snapshot
Ploidy-dependent changes in the epigenome of symbiotic cells correlate with specific patterns of gene expression
inferred← citeshttps://doi.org/10.1080/10495398.2024.2394692openalex-snapshot
Spatial distribution of maternal factors in pig mature oocytes
inferred← citeshttps://doi.org/10.1089/cell.2017.0022openalex-snapshot
Cocktail of Chemical Compounds and Recombinant Proteins Robustly Promote the Stemness of Adipose-Derived Stem Cells
inferred← citeshttps://doi.org/10.1101/414094openalex-snapshot
NUCOME : A Comprehensive Database of Nucleosome Organizations in Mammalian Genomes
inferred← citeshttps://doi.org/10.1186/s12864-019-5438-2openalex-snapshot
Conserved regulation of RNA processing in somatic cell reprogramming
inferred← citeshttps://doi.org/10.1186/s13148-025-02044-2openalex-snapshot
Modeling mammalian meiosis with pluripotent stem cells: progress and challenges
inferred← citeshttps://doi.org/10.1371/journal.pone.0174225openalex-snapshot
Genome-scale identification of nucleosome organization by using 1000 porcine oocytes at different developmental stages
inferred← citeshttps://doi.org/10.14232/phd.4084openalex-snapshot
Ploidy-dependent changes in the epigenome of symbiotic cells correlate with specific patterns of gene expression
inferred← citeshttps://doi.org/10.15252/embr.202051644openalex-snapshot
Chromatin accessibility dynamics during cell fate reprogramming
inferred← citeshttps://doi.org/10.3389/fcell.2023.1328522openalex-snapshot
Metabolic control of induced pluripotency
inferred← citeshttps://doi.org/10.3389/fcell.2025.1559183openalex-snapshot
Epigenetic regulation of reprogramming and pluripotency: insights from histone modifications and their implications for cancer stem cell therapies
inferred← citeshttps://doi.org/10.3390/ani14233392openalex-snapshot
Comparison of Nucleosome Landscapes Between Porcine Embryonic Fibroblasts and GV Oocytes
inferred← citeshttps://doi.org/10.3390/cells11091404openalex-snapshot
Epigenetics, Enhancer Function and 3D Chromatin Organization in Reprogramming to Pluripotency
inferred← citeshttps://doi.org/10.3390/genes14091697openalex-snapshot
Application of the Yamanaka Transcription Factors Oct4, Sox2, Klf4, and c-Myc from the Laboratory to the Clinic
inferred← citeshttps://doi.org/10.3390/ijms25168819openalex-snapshot
Repetitive Sequence Stability in Embryonic Stem Cells
inferred← citeshttps://doi.org/10.64898/2026.01.16.699330openalex-snapshot
A Physics-based Model Reveals Mechanisms of Epigenetic Memory
inferred← citeshttps://doi.org/10.70675/9498494cz4886z4a37za061z1abd0292806aopenalex-snapshot
Ploidy-dependent changes in the epigenome of symbiotic cells correlate with specific patterns of gene expression
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