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Climate explains recent population divergence, introgression and persistence in tropical mountains: phylogenomic evidence from Atlantic Forest warbling finches

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Outgoing claims: the papers this work cites, builds on, or argues with.

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Geographical patterns for relict and young species of birds in Africa and South America and implications for conservation priorities
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Late Quaternary vegetation, fire and climate dynamics of Serra do Araçatuba in the Atlantic coastal mountains of Paraná State, southern Brazil
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Long-term landscape evolution and post-rift reactivation in the southeastern Brazilian passive continental margin: Taubaté basin
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Temporal Dynamics of Avian Populations during Pleistocene Revealed by Whole-Genome Sequences
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Late-Pleistocene and mid-Holocene environmental changes in highland valley head areas of Santa Catarina state, Southern Brazil
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Related changes in biodiversity, insolation and climate in the Atlantic rainforest since the last interglacial
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Late Quaternary vegetation and climate dynamics in the Serra da Bocaina, southeastern Brazil
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Evolution of the South Atlantic passive continental margin in southern Brazil derived from zircon and apatite (U–Th–Sm)/He and fission-track data
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Coalescent models reveal the relative roles of ancestral polymorphism, vicariance, and dispersal in shaping phylogeographical structure of an African montane forest robin
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Evolutionary differentiation in the Neotropical montane region: Molecular phylogenetics and phylogeography of Buarremon brush-finches (Aves, Emberizidae)
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Phylogeography of endemic toads and post-Pliocene persistence of the Brazilian Atlantic Forest
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Demographic processes in the montane Atlantic rainforest: Molecular and cytogenetic evidence from the endemic frog Proceratophrys boiei
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Phylogeography of an Atlantic forest passerine reveals demographic stability through the last glacial maximum
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Species delimitation, phylogeny and evolutionary demography of co-distributed, montane frogs in the southern Brazilian Atlantic Forest
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Upper Pleistocene to Holocene peatland evolution in Southern Brazilian highlands as depicted by radar stratigraphy, sedimentology and palynology
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Late Quaternary vegetation, climate and fire history from the tropical mountain region of Morro de Itapeva, SE Brazil
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Consolidation and Break-up of the South American Platform in Southeastern Brazil: Tectonothermal and Denudation Histories
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Mountain Weather and Climate Third Edition
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Post‐breakup tectonics in southeast Brazil from thermochronological data and combined inverse‐forward thermal history modeling
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Multiple origins of mountain life
inferredcites →https://doi.org/10.1073/pnas.0809320106openalex-snapshot
Elevation increases in moth assemblages over 42 years on a tropical mountain
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Phenotypes in phylogeography: Species’ traits, environmental variation, and vertebrate diversification
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Prediction of phylogeographic endemism in an environmentally complex biome
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Quaternary Ice-Age dynamics in the Colombian Andes: developing an understanding of our legacy
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Late Quaternary vegetation, biodiversity and fire dynamics on the southern Brazilian highland and their implication for conservation and management of modern Araucaria forest and grassland ecosystems
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The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
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popart : full‐feature software for haplotype network construction
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The origin and maintenance of montane diversity: integrating evolutionary and ecological processes
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Distributional shifts – not geographic isolation – as a probable driver of montane species divergence
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The tempo of trait divergence in geographic isolation: Avian speciation across the Marañon Valley of Peru
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Phylogeography of Xiphorhynchus fuscus (Passeriformes, Dendrocolaptidae): vicariance and recent demographic expansion in southern Atlantic forest
inferredcites →https://doi.org/10.1111/j.1095-8312.2011.01823.xopenalex-snapshot
Climatic oscillations shape the phylogeographical structure of Atlantic Forest fire-eye antbirds (Aves: Thamnophilidae)
inferredcites →https://doi.org/10.1111/j.1365-2486.2009.02029.xopenalex-snapshot
Late‐glacial and Holocene vegetation, climate and fire dynamics in the Serra dos Órgãos, Rio de Janeiro State, southeastern Brazil
inferredcites →https://doi.org/10.1111/j.1557-9263.2012.00390.xopenalex-snapshot
A simple and effective air shotgun for collecting small birds and other vertebrates at close range
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mt DNA PHYLOGENY OF ANDEAN MICE: A TEST OF DIVERSIFICATION ACROSS ECOLOGICAL GRADIENTS
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Correlation between endemism and local ecoclimatic stability documented by comparing Andean bird distributions and remotely sensed land surface data
inferredcites →https://doi.org/10.1111/j.1600-0587.2010.06282.xopenalex-snapshot
Tectonics, topography, and mammalian diversity
inferredcites →https://doi.org/10.1111/mec.12361openalex-snapshot
Multilocus tests of P leistocene refugia and ancient divergence in a pair of A tlantic F orest antbirds ( M yrmeciza)
inferredcites →https://doi.org/10.1111/mec.12986openalex-snapshot
Barriers, rather than refugia, underlie the origin of diversity in toads endemic to the Brazilian Atlantic Forest
inferredcites →https://doi.org/10.1111/mec.14461openalex-snapshot
Long‐term in situ persistence of biodiversity in tropical sky islands revealed by landscape genomics
inferredcites →https://doi.org/10.1111/mec.14843openalex-snapshot
Recent chapters of Neotropical history overlooked in phylogeography: Shallow divergence explains phenotype and genotype uncoupling inAntilophiamanakins
inferredcites →https://doi.org/10.1126/science.1163428openalex-snapshot
Impact of a Century of Climate Change on Small-Mammal Communities in Yosemite National Park, USA
inferredcites →https://doi.org/10.1126/science.1166955openalex-snapshot
Stability Predicts Genetic Diversity in the Brazilian Atlantic Forest Hotspot
inferredcites →https://doi.org/10.1146/annurev-ecolsys-102710-145113openalex-snapshot
The Role of Mountain Ranges in the Diversification of Birds
inferredcites →https://doi.org/10.1186/1471-2156-11-94openalex-snapshot
Discriminant analysis of principal components: a new method for the analysis of genetically structured populations
inferredcites →https://doi.org/10.1186/s12862-016-0803-0openalex-snapshot
Comparative phylogeography in the Atlantic forest and Brazilian savannas: pleistocene fluctuations and dispersal shape spatial patterns in two bumblebees
inferredcites →https://doi.org/10.1206/622.1openalex-snapshot
A New Genus of Microteiid Lizard from the Caparaó Mountains, Southeastern Brazil, with a Discussion of Relationships among Gymnophthalminae (Squamata)
inferredcites →https://doi.org/10.1306/8626d0a9-173b-11d7-8645000102c1865dopenalex-snapshot
Segmentation of an Obliquely Rifted Margin, Campos and Santos Basins, Southeastern Brazil
inferredcites →https://doi.org/10.1371/journal.pgen.1000695openalex-snapshot
Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data
inferredcites →https://doi.org/10.1371/journal.pgen.1003905openalex-snapshot
Robust Demographic Inference from Genomic and SNP Data
inferredcites →https://doi.org/10.1371/journal.pone.0121543openalex-snapshot
Pleistocene Niche Stability and Lineage Diversification in the Subtropical Spider Araneus omnicolor (Araneidae)
inferredcites →https://doi.org/10.1371/journal.pone.0138446openalex-snapshot
Ultraconserved Elements Sequencing as a Low-Cost Source of Complete Mitochondrial Genomes and Microsatellite Markers in Non-Model Amniotes
inferredcites →https://doi.org/10.1534/genetics.113.160572openalex-snapshot
Fast and Efficient Estimation of Individual Ancestry Coefficients
inferredcites →https://doi.org/10.1590/0031-1049.2014.54.07openalex-snapshot
Taxonomy and biogeography of Stephanoxis Simon, 1897 (Aves: Trochilidae)
inferredcites →https://doi.org/10.2307/1551614openalex-snapshot
Biogeography and Quaternary History in Tropical America
inferredcites →https://doi.org/10.2307/2266160openalex-snapshot
Neotropical Birds: Ecology and Conservation.
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GEOLOGIA E EVOLUÇÃO DO SISTEMA DE BACIAS TAFROGÊNICAS CONTINENTAIS DO SUDESTE DO BRASIL
inferredcites →https://doi.org/10.25249/0375-7536.1998135150openalex-snapshot
ORIGEM E EVOLUÇÃO DA SERRA DO MAR
inferredcites →https://doi.org/10.6084/m9.figshare.963153.v1openalex-snapshot
Aligning sequence reads, clone sequences and assembly con*gs with BWA-MEM

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s10914-024-09742-3openalex-snapshot
Phylogenetic relationships of Marmosops Matschie, 1916 in the Atlantic Forest and topography effects on the diversity of M. paulensis Tate, 1931 (Didelphidae: Thylamyini)
inferred← citeshttps://doi.org/10.1007/s43388-025-00244-1openalex-snapshot
Population-level mitogenomes of Hemitriccus obsoletus (Aves: Rhynchocyclidae), an endemism of a Neotropical biodiversity hotspot
inferred← citeshttps://doi.org/10.1016/j.ympev.2020.106812openalex-snapshot
Climatic dynamics and topography control genetic variation in Atlantic Forest montane birds
inferred← citeshttps://doi.org/10.1016/j.ympev.2020.106925openalex-snapshot
Life history and ecology might explain incongruent population structure in two co-distributed montane bird species of the Atlantic Forest
inferred← citeshttps://doi.org/10.1016/j.ympev.2021.107157openalex-snapshot
North-south and climate-landscape-associated pattern of population structure for the Atlantic Forest White Morpho butterflies
inferred← citeshttps://doi.org/10.1111/jbi.14478openalex-snapshot
Population dynamics of Amazonian floodplain forest species support spatial variation on genetic diversity but not range expansions through time
inferred← citeshttps://doi.org/10.11606/t.41.2020.tde-16122019-135409openalex-snapshot
Biogeografia e filogeografia comparada das aves do Centro de Endemismo Pernambuco utilizando Elementos Ultra Conservados (UCEs)
inferred← citeshttps://doi.org/10.47328/ufvbbt.2022.278openalex-snapshot
Efeitos da altitude na diversidade genética e delimitação de espécies das cuícas esbeltas do gênero Marmosops (Didelphidae: Thylamyini) na Floresta Atlântica
inferred← citeshttps://doi.org/10.7287/peerj.13534v0.1/reviews/1openalex-snapshot
Peer Review #1 of "A framework for near-real time monitoring of diversity patterns based on indirect remote sensing, with an application in the Brazilian Atlantic rainforest (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.13534v0.1/reviews/2openalex-snapshot
Peer Review #2 of "A framework for near-real time monitoring of diversity patterns based on indirect remote sensing, with an application in the Brazilian Atlantic rainforest (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.13534v0.1/reviews/3openalex-snapshot
Peer Review #3 of "A framework for near-real time monitoring of diversity patterns based on indirect remote sensing, with an application in the Brazilian Atlantic rainforest (v0.1)"
inferred← citeshttps://doi.org/10.7717/peerj.13534openalex-snapshot
A framework for near-real time monitoring of diversity patterns based on indirect remote sensing, with an application in the Brazilian Atlantic rainforest
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.