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Recent chapters of Neotropical history overlooked in phylogeography: Shallow divergence explains phenotype and genotype uncoupling inAntilophiamanakins

https://doi.org/10.1111/mec.14843
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Outgoing claims: the papers this work cites, builds on, or argues with.

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AMPHIBIAN DNA SHOWS MARKED GENETIC STRUCTURE AND TRACKS PLEISTOCENE CLIMATE CHANGE IN NORTHEASTERN BRAZIL
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Landscape evolution and phylogeography of Micrablepharus atticolus (Squamata, Gymnophthalmidae), an endemic lizard of the Brazilian Cerrado
inferredcites →https://doi.org/10.1111/mec.12361openalex-snapshot
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inferredcites →https://doi.org/10.1111/mec.12937openalex-snapshot
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inferredcites →https://doi.org/10.11606/0031-1049.1980.34.p189-204openalex-snapshot
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inferredcites →https://doi.org/10.1186/1471-2156-11-94openalex-snapshot
Discriminant analysis of principal components: a new method for the analysis of genetically structured populations
inferredcites →https://doi.org/10.1186/s12862-015-0368-3openalex-snapshot
Biogeographic history and cryptic diversity of saxicolous Tropiduridae lizards endemic to the semiarid Caatinga
inferredcites →https://doi.org/10.1371/journal.pgen.1000695openalex-snapshot
Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data
inferredcites →https://doi.org/10.1371/journal.pgen.1003905openalex-snapshot
Robust Demographic Inference from Genomic and SNP Data
inferredcites →https://doi.org/10.1525/auk.2009.09052openalex-snapshot
Population Genetic Studies of Mitochondrial Pseudo-Control Region in the Endangered Araripe Manakin (Antilophia bokermanni)
inferredcites →https://doi.org/10.1525/auk.2013.12241openalex-snapshot
Phylogeography of the California Gnatcatcher (Polioptila californica) using multilocus DNA sequences and ecological niche modeling
inferredcites →https://doi.org/10.1534/genetics.108.092221openalex-snapshot
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inferredcites →https://doi.org/10.1534/genetics.108.099812openalex-snapshot
Testing for Spatially Divergent Selection: Comparing QST to FST
inferredcites →https://doi.org/10.1534/genetics.113.160572openalex-snapshot
Fast and Efficient Estimation of Individual Ancestry Coefficients
inferredcites →https://doi.org/10.1641/0006-3568(2002)052[0225:bpacit]2.0.co;2openalex-snapshot
Biogeographic Patterns and Conservation in the South American Cerrado: A Tropical Savanna Hotspot
inferredcites →https://doi.org/10.1642/auk-14-184.1openalex-snapshot
Interpreting negative results with taxonomic and conservation implications: Another look at the distinctness of coastal California Gnatcatchers
inferredcites →https://doi.org/10.1642/auk-15-63.1openalex-snapshot
Geographic variation, null hypotheses, and subspecies limits in the California Gnatcatcher: A response to McCormack and Maley
inferredcites →https://doi.org/10.2307/1222013openalex-snapshot
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inferredcites →https://doi.org/10.2307/40168278openalex-snapshot
Historical Biogeography and Patterns of Differentiation within the South American Avifauna: Areas of Endemism
inferredcites →https://doi.org/10.2307/4088172openalex-snapshot
Mating System of the Helmeted Manakin (Antilophia galeata) in Central Brazil
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Aligning sequence reads, clone sequences and assembly con*gs with BWA-MEM

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Taxonomic challenges posed by discordant evolutionary scenarios supported by molecular and morphological data in the Amazonian Synallaxis rutilans group (Aves: Furnariidae)
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The Use of Microsatellites and Snps to Analyze Genetic Diversity Parameters in the Threatened Bird Antilophia (Soldadinho-Do-Araripe): A Comparative Study
inferred← citeshttps://doi.org/10.1007/978-3-030-31167-4_16openalex-snapshot
Patterns of Species and Lineage Diversity in the Atlantic Rainforest of Brazil
inferred← citeshttps://doi.org/10.1007/s10336-019-01655-wopenalex-snapshot
Characterization of the genetic diversity and population structure of the manakin genus Antilophia through the development and analysis of microsatellite markers
inferred← citeshttps://doi.org/10.1007/s10336-021-01948-zopenalex-snapshot
Historical climate change as driver of populational range expansion and differentiation in a rare and partially migratory Neotropical bird
inferred← citeshttps://doi.org/10.1016/j.jaridenv.2021.104537openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.ympev.2019.106551openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.ympev.2020.106925openalex-snapshot
Life history and ecology might explain incongruent population structure in two co-distributed montane bird species of the Atlantic Forest
inferred← citeshttps://doi.org/10.1016/j.ympev.2020.106973openalex-snapshot
Comparative phylogeographic and demographic analyses reveal a congruent pattern of sister relationships between bird populations of the northern and south-central Atlantic Forest
inferred← citeshttps://doi.org/10.1016/j.ympev.2021.107220openalex-snapshot
Sympatric and independently evolving lineages in the Thoropa miliaris – T. taophora species complex (Anura: Cycloramphidae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2022.107445openalex-snapshot
The tangled evolutionary history of a long-debated Mesoamerican taxon: The Velazquez Woodpecker (Melanerpes santacruzi, Aves: Picidae)
inferred← citeshttps://doi.org/10.1093/biolinnean/blac118openalex-snapshot
Forest cover and geographical distance influence fine-scale genetic structure of leaf-toed geckos in the tropical dry forests of western Mexico
inferred← citeshttps://doi.org/10.1093/evolut/qpad052openalex-snapshot
Strong habitat-specific phenotypic plasticity but no genome-wide differentiation across a rainforest gradient in an African butterfly
inferred← citeshttps://doi.org/10.1093/ornithapp/duac009openalex-snapshot
Genetic monitoring of the Critically Endangered Araripe Manakin reveals low diversity and declining effective population size
inferred← citeshttps://doi.org/10.1101/439265openalex-snapshot
Climate explains recent population divergence, introgression and persistence in tropical mountains: phylogenomic evidence from Atlantic Forest warbling finches
inferred← citeshttps://doi.org/10.1111/evo.14318openalex-snapshot
Rugged relief and climate promote isolation and divergence between two neotropical cold-associated birds
inferred← citeshttps://doi.org/10.1111/jbi.14257openalex-snapshot
Genomic differentiation with gene flow in a widespread Amazonian floodplain‐specialist bird species
inferred← citeshttps://doi.org/10.1111/jbi.14478openalex-snapshot
Population dynamics of Amazonian floodplain forest species support spatial variation on genetic diversity but not range expansions through time
inferred← citeshttps://doi.org/10.1111/mec.16741openalex-snapshot
Late Pleistocene landscape changes and habitat specialization as promoters of population genomic divergence in Amazonian floodplain birds
inferred← citeshttps://doi.org/10.1111/mec.70130openalex-snapshot
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inferred← citeshttps://doi.org/10.1186/s40657-019-0159-4openalex-snapshot
Multispecies hybridization in birds
inferred← citeshttps://doi.org/10.2173/bow.araman1.02openalex-snapshot
Araripe Manakin (Chiroxiphia bokermanni)
inferred← citeshttps://doi.org/10.2173/bow.helman1.02openalex-snapshot
Helmeted Manakin (Chiroxiphia galeata)
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A Multireference-Based Whole Genome Assembly for the Obligate Ant-Following Antbird, Rhegmatorhina melanosticta (Thamnophilidae)
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The effects of Pleistocene climatic cycles on avian historic demography across Amazonia
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