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The GBAF chromatin remodeling complex binds H3K27ac and mediates enhancer transcription

https://doi.org/10.1101/445148
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/0471142727.mb2129s109openalex-snapshot
ATAC‐seq: A Method for Assaying Chromatin Accessibility Genome‐Wide
inferredcites →https://doi.org/10.1002/bies.201600032openalex-snapshot
Gene activation by metazoan enhancers: Diverse mechanisms stimulate distinct steps of transcription
inferredcites →https://doi.org/10.1002/pmic.201400013openalex-snapshot
MBD5 and MBD6 interact with the human PR‐DUB complex through their methyl‐CpG‐binding domain
inferredcites →https://doi.org/10.1002/pmic.201600167openalex-snapshot
msVolcano: A flexible web application for visualizing quantitative proteomics data
inferredcites →https://doi.org/10.1016/0092-8674(81)90019-2openalex-snapshot
Isolation of coactivators associated with the TATA-binding protein that mediate transcriptional activation
inferredcites →https://doi.org/10.1016/b978-0-12-391940-3.00007-xopenalex-snapshot
Identifying Chromatin Readers Using a SILAC-Based Histone Peptide Pull-Down Approach
inferredcites →https://doi.org/10.1016/j.bbrc.2007.01.193openalex-snapshot
Polybromo-1-bromodomains bind histone H3 at specific acetyl-lysine positions
inferredcites →https://doi.org/10.1016/j.cell.2007.01.015openalex-snapshot
The Role of Chromatin during Transcription
inferredcites →https://doi.org/10.1016/j.cell.2007.02.005openalex-snapshot
Chromatin Modifications and Their Function
inferredcites →https://doi.org/10.1016/j.cell.2007.08.016openalex-snapshot
Selective Anchoring of TFIID to Nucleosomes by Trimethylation of Histone H3 Lysine 4
inferredcites →https://doi.org/10.1016/j.cell.2012.12.006openalex-snapshot
Olig2 Targets Chromatin Remodelers to Enhancers to Initiate Oligodendrocyte Differentiation
inferredcites →https://doi.org/10.1016/j.cell.2014.09.049openalex-snapshot
AF9 YEATS Domain Links Histone Acetylation to DOT1L-Mediated H3K79 Methylation
inferredcites →https://doi.org/10.1016/j.cell.2014.11.021openalex-snapshot
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
inferredcites →https://doi.org/10.1016/j.molcel.2008.08.027openalex-snapshot
Distinct Modes of Regulation of the Uch37 Deubiquitinating Enzyme in the Proteasome and in the Ino80 Chromatin-Remodeling Complex
inferredcites →https://doi.org/10.1016/j.molcel.2010.01.026openalex-snapshot
AFF4, a Component of the ELL/P-TEFb Elongation Complex and a Shared Subunit of MLL Chimeras, Can Link Transcription Elongation to Leukemia
inferredcites →https://doi.org/10.1016/j.tig.2014.05.001openalex-snapshot
A rationale to target the SWI/SNF complex for cancer therapy
inferredcites →https://doi.org/10.1016/j.tig.2015.10.004openalex-snapshot
The Hierarchy of Transcriptional Activation: From Enhancer to Promoter
inferredcites →https://doi.org/10.1016/s1097-2765(00)80315-9openalex-snapshot
Reconstitution of a Core Chromatin Remodeling Complex from SWI/SNF Subunits
inferredcites →https://doi.org/10.1021/acs.jmedchem.5b00256openalex-snapshot
Discovery of I-BRD9, a Selective Cell Active Chemical Probe for Bromodomain Containing Protein 9 Inhibition
inferredcites →https://doi.org/10.1038/cr.2011.32openalex-snapshot
ATP-dependent chromatin remodeling: genetics, genomics and mechanisms
inferredcites →https://doi.org/10.1038/nature07829openalex-snapshot
Histone modifications at human enhancers reflect global cell-type-specific gene expression
inferredcites →https://doi.org/10.1038/nature09692openalex-snapshot
A unique chromatin signature uncovers early developmental enhancers in humans
inferredcites →https://doi.org/10.1038/nature09906openalex-snapshot
Mapping and analysis of chromatin state dynamics in nine human cell types
inferredcites →https://doi.org/10.1038/nature10098openalex-snapshot
Global quantification of mammalian gene expression control
inferredcites →https://doi.org/10.1038/nature11279openalex-snapshot
The long-range interaction landscape of gene promoters
inferredcites →https://doi.org/10.1038/nature12787openalex-snapshot
An atlas of active enhancers across human cell types and tissues
inferredcites →https://doi.org/10.1038/nature14248openalex-snapshot
Integrative analysis of 111 reference human epigenomes
inferredcites →https://doi.org/10.1038/nature14906openalex-snapshot
Integrator mediates the biogenesis of enhancer RNAs
inferredcites →https://doi.org/10.1038/nbt.3199openalex-snapshot
Epigenome editing by a CRISPR-Cas9-based acetyltransferase activates genes from promoters and enhancers
inferredcites →https://doi.org/10.1038/ncomms14648openalex-snapshot
The SWI/SNF chromatin remodelling complex is required for maintenance of lineage specific enhancers
inferredcites →https://doi.org/10.1038/ncomms8155openalex-snapshot
Proteins that bind regulatory regions identified by histone modification chromatin immunoprecipitations and mass spectrometry
inferredcites →https://doi.org/10.1038/ng.154openalex-snapshot
Combinatorial patterns of histone acetylations and methylations in the human genome
inferredcites →https://doi.org/10.1038/ng.3746openalex-snapshot
SMARCB1-mediated SWI/SNF complex function is essential for enhancer regulation
inferredcites →https://doi.org/10.1038/ng.3958openalex-snapshot
SMARCB1 is required for widespread BAF complex–mediated activation of enhancers and bivalent promoters
inferredcites →https://doi.org/10.1038/nprot.2006.468openalex-snapshot
In-gel digestion for mass spectrometric characterization of proteins and proteomes
inferredcites →https://doi.org/10.1038/nprot.2007.261openalex-snapshot
Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips
inferredcites →https://doi.org/10.1038/nprot.2012.005openalex-snapshot
5′ end–centered expression profiling using cap-analysis gene expression and next-generation sequencing
inferredcites →https://doi.org/10.1038/nrg3163openalex-snapshot
Metazoan promoters: emerging characteristics and insights into transcriptional regulation
inferredcites →https://doi.org/10.1038/nrm3417openalex-snapshot
The super elongation complex (SEC) family in transcriptional control
inferredcites →https://doi.org/10.1038/nrm3949openalex-snapshot
The selection and function of cell type-specific enhancers
inferredcites →https://doi.org/10.1038/nsmb.3248openalex-snapshot
The dynamic interactome and genomic targets of Polycomb complexes during stem-cell differentiation
inferredcites →https://doi.org/10.1038/nsmb1276openalex-snapshot
YY1 functions with INO80 to activate transcription
inferredcites →https://doi.org/10.1038/s41594-017-0007-3openalex-snapshot
Dominant-negative SMARCA4 mutants alter the accessibility landscape of tissue-unrestricted enhancers
inferredcites →https://doi.org/10.1073/pnas.1016071107openalex-snapshot
Histone H3K27ac separates active from poised enhancers and predicts developmental state
inferredcites →https://doi.org/10.1073/pnas.1502971112openalex-snapshot
Chromatin proteomic profiling reveals novel proteins associated with histone-marked genomic regions
inferredcites →https://doi.org/10.1074/jbc.m111.222505openalex-snapshot
Subunit Organization of the Human INO80 Chromatin Remodeling Complex
inferredcites →https://doi.org/10.1074/jbc.m509128200openalex-snapshot
A Mammalian Chromatin Remodeling Complex with Similarities to the Yeast INO80 Complex
inferredcites →https://doi.org/10.1074/jbc.ra117.001065openalex-snapshot
Glioma tumor suppressor candidate region gene 1 (GLTSCR1) and its paralog GLTSCR1-like form SWI/SNF chromatin remodeling subcomplexes
inferredcites →https://doi.org/10.1074/mcp.m115.048975openalex-snapshot
Top-down and Middle-down Protein Analysis Reveals that Intact and Clipped Human Histones Differ in Post-translational Modification Patterns*
inferredcites →https://doi.org/10.1074/mcp.o114.046102openalex-snapshot
Sequential Window Acquisition of all Theoretical Mass Spectra (SWATH) Analysis for Characterization and Quantification of Histone Post-translational Modifications
inferredcites →https://doi.org/10.1080/21541264.2016.1194027openalex-snapshot
Super elongation complex contains a TFIIF-related subcomplex
inferredcites →https://doi.org/10.1093/nar/11.5.1475openalex-snapshot
Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei
inferredcites →https://doi.org/10.1093/nar/gks1039openalex-snapshot
A dynamic and intricate regulatory network determines Pseudomonas aeruginosa virulence
inferredcites →https://doi.org/10.1093/nar/gks941openalex-snapshot
Stoichiometry of chromatin-associated protein complexes revealed by label-free quantitative mass spectrometry-based proteomics
inferredcites →https://doi.org/10.1093/nar/gky244openalex-snapshot
Transcription start site analysis reveals widespread divergent transcription in D. melanogaster and core promoter-encoded enhancer activities
inferredcites →https://doi.org/10.1101/gad.10.17.2117openalex-snapshot
Diversity and specialization of mammalian SWI/SNF complexes.
inferredcites →https://doi.org/10.1126/science.1063127openalex-snapshot
Translating the Histone Code
inferredcites →https://doi.org/10.1128/ec.00165-06openalex-snapshot
SWI/SNF Displaces SAGA-Acetylated Nucleosomes
inferredcites →https://doi.org/10.1128/mcb.01341-10openalex-snapshot
The Brd4 Extraterminal Domain Confers Transcription Activation Independent of pTEFb by Recruiting Multiple Proteins, Including NSD3
inferredcites →https://doi.org/10.1128/mcb.24.5.1884-1896.2004openalex-snapshot
Structural and Functional Conservation of the NuA4 Histone Acetyltransferase Complex from Yeast to Humans
inferredcites →https://doi.org/10.1158/1538-7445.am2017-lb-096openalex-snapshot
Abstract LB-096: SMARCB1-mediated SWI/SNF complex function is essential for enhancer regulation
inferredcites →https://doi.org/10.1242/dev.037127openalex-snapshot
CBP-mediated acetylation of histone H3 lysine 27 antagonizesDrosophilaPolycomb silencing
inferredcites →https://doi.org/10.1534/g3.114.013565openalex-snapshot
Distinct and Predictive Histone Lysine Acetylation Patterns at Promoters, Enhancers, and Gene Bodies

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/1878-0261.13195openalex-snapshot
FET fusion oncoproteins interact with BRD4 and SWI/SNF chromatin remodelling complex subtypes in sarcoma
inferred← citeshttps://doi.org/10.1016/j.stem.2024.04.017openalex-snapshot
Deciphering lineage specification during early embryogenesis in mouse gastruloids using multilayered proteomics
inferred← citeshttps://doi.org/10.1093/nar/gkz594openalex-snapshot
Zscan4c activates endogenous retrovirus MERVL and cleavage embryo genes
inferred← citeshttps://doi.org/10.1101/2020.07.21.214338openalex-snapshot
The TAZ2 domain of CBP/p300 directs acetylation towards H3K27 within chromatin
inferred← citeshttps://doi.org/10.1186/s13072-020-00370-8openalex-snapshot
GBAF, a small BAF sub-complex with big implications: a systematic review
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