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Zscan4c activates endogenous retrovirus MERVL and cleavage embryo genes

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/0471250953.bi0410s05openalex-snapshot

Using Repeat Masker to Identify Repetitive Elements in Genomic Sequences

inferredcites →https://doi.org/10.1002/0471250953.bi0410s25openalex-snapshot

Using RepeatMasker to Identify Repetitive Elements in Genomic Sequences

inferredcites →https://doi.org/10.1002/jcp.24980openalex-snapshot

Roles for Histone Acetylation in Regulation of Telomere Elongation and Two‐cell State in Mouse ES Cells

inferredcites →https://doi.org/10.1002/mnfr.200500241openalex-snapshot

The L513S polymorphism in medium‐chain acyl‐CoA synthetase 2 (MACS2) is associated with risk factors of the metabolic syndrome in a Caucasian study population

inferredcites →https://doi.org/10.1007/s00018-008-8497-0openalex-snapshot

Endogenous retroviruses

inferredcites →https://doi.org/10.1007/s00412-012-0380-yopenalex-snapshot

Evolution of DUX gene macrosatellites in placental mammals

inferredcites →https://doi.org/10.1016/j.cell.2015.08.037openalex-snapshot

Systematic Identification of Factors for Provirus Silencing in Embryonic Stem Cells

inferredcites →https://doi.org/10.1016/j.cell.2016.12.016openalex-snapshot

Cooperative Binding of Transcription Factors Orchestrates Reprogramming

inferredcites →https://doi.org/10.1016/j.celrep.2016.08.087openalex-snapshot

MERVL/Zscan4 Network Activation Results in Transient Genome-wide DNA Demethylation of mESCs

inferredcites →https://doi.org/10.1016/j.celrep.2016.12.010openalex-snapshot

TRIM28 Controls a Gene Regulatory Network Based on Endogenous Retroviruses in Human Neural Progenitor Cells

inferredcites →https://doi.org/10.1016/j.celrep.2017.07.070openalex-snapshot

Zscan4 Inhibits Maintenance DNA Methylation to Facilitate Telomere Elongation in Mouse Embryonic Stem Cells

inferredcites →https://doi.org/10.1016/j.devcel.2014.03.004openalex-snapshot

Rif1 Maintains Telomere Length Homeostasis of ESCs by Mediating Heterochromatin Silencing

inferredcites →https://doi.org/10.1016/j.gde.2017.07.012openalex-snapshot

Regulation of ERVs in pluripotent stem cells and reprogramming

inferredcites →https://doi.org/10.1016/j.molcel.2014.05.029openalex-snapshot

Suv39h-Dependent H3K9me3 Marks Intact Retrotransposons and Silences LINE Elements in Mouse Embryonic Stem Cells

inferredcites →https://doi.org/10.1016/j.stem.2011.04.004openalex-snapshot

DNA Methylation and SETDB1/H3K9me3 Regulate Predominantly Distinct Sets of Genes, Retroelements, and Chimeric Transcripts in mESCs

inferredcites →https://doi.org/10.1016/j.stem.2015.01.005openalex-snapshot

Dynamic Transcription of Distinct Classes of Endogenous Retroviral Elements Marks Specific Populations of Early Human Embryonic Cells

inferredcites →https://doi.org/10.1016/j.stem.2015.07.022openalex-snapshot

The Daxx/Atrx Complex Protects Tandem Repetitive Elements during DNA Hypomethylation by Promoting H3K9 Trimethylation

inferredcites →https://doi.org/10.1016/j.stem.2016.03.013openalex-snapshot

Activation of Endogenous Retroviruses in Dnmt1 −/− ESCs Involves Disruption of SETDB1-Mediated Repression by NP95 Binding to Hemimethylated DNA

inferredcites →https://doi.org/10.1016/j.stem.2019.03.012openalex-snapshot

Hominoid-Specific Transposable Elements and KZFPs Facilitate Human Embryonic Genome Activation and Control Transcription in Naive Human ESCs

inferredcites →https://doi.org/10.1016/j.tig.2017.08.006openalex-snapshot

The Role of KRAB-ZFPs in Transposable Element Repression and Mammalian Evolution

inferredcites →https://doi.org/10.1016/j.ydbio.2007.05.003openalex-snapshot

Zscan4: A novel gene expressed exclusively in late 2-cell embryos and embryonic stem cells

inferredcites →https://doi.org/10.1038/cr.2018.1openalex-snapshot

Histone H3 lysine 4 monomethylation modulates long-range chromatin interactions at enhancers

inferredcites →https://doi.org/10.1038/nature08882openalex-snapshot

Zscan4 regulates telomere elongation and genomic stability in ES cells

inferredcites →https://doi.org/10.1038/nature11244openalex-snapshot

Embryonic stem cell potency fluctuates with endogenous retrovirus activity

inferredcites →https://doi.org/10.1038/nature13804openalex-snapshot

Primate-specific endogenous retrovirus-driven transcription defines naive-like stem cells

inferredcites →https://doi.org/10.1038/nature14308openalex-snapshot

Intrinsic retroviral reactivation in human preimplantation embryos and pluripotent cells

inferredcites →https://doi.org/10.1038/nature14345openalex-snapshot

Histone H3.3 is required for endogenous retroviral element silencing in embryonic stem cells

inferredcites →https://doi.org/10.1038/nature18606openalex-snapshot

The landscape of accessible chromatin in mammalian preimplantation embryos

inferredcites →https://doi.org/10.1038/nature19360openalex-snapshot

Broad histone H3K4me3 domains in mouse oocytes modulate maternal-to-zygotic transition

inferredcites →https://doi.org/10.1038/nature21683openalex-snapshot

KRAB zinc-finger proteins contribute to the evolution of gene regulatory networks

inferredcites →https://doi.org/10.1038/nbt.1754openalex-snapshot

Integrative genomics viewer

inferredcites →https://doi.org/10.1038/ncb1664openalex-snapshot

Telomere lengthening early in development

inferredcites →https://doi.org/10.1038/ncomms14648openalex-snapshot

The SWI/SNF chromatin remodelling complex is required for maintenance of lineage specific enhancers

inferredcites →https://doi.org/10.1038/ncomms2966openalex-snapshot

Zscan4 restores the developmental potency of embryonic stem cells

inferredcites →https://doi.org/10.1038/ng.2965openalex-snapshot

Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance

inferredcites →https://doi.org/10.1038/ng.3844openalex-snapshot

Conserved roles of mouse DUX and human DUX4 in activating cleavage-stage genes and MERVL/HERVL retrotransposons

inferredcites →https://doi.org/10.1038/ng.3846openalex-snapshot

Conservation and innovation in the DUX4-family gene network

inferredcites →https://doi.org/10.1038/ng.3858openalex-snapshot

DUX-family transcription factors regulate zygotic genome activation in placental mammals

inferredcites →https://doi.org/10.1038/ng.3945openalex-snapshot

LINE-1 activation after fertilization regulates global chromatin accessibility in the early mouse embryo

inferredcites →https://doi.org/10.1038/ng.600openalex-snapshot

Transposable elements have rewired the core regulatory network of human embryonic stem cells

inferredcites →https://doi.org/10.1038/ng1760openalex-snapshot

The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells

inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot

Fast gapped-read alignment with Bowtie 2

inferredcites →https://doi.org/10.1038/nmeth.3317openalex-snapshot

HISAT: a fast spliced aligner with low memory requirements

inferredcites →https://doi.org/10.1038/nprot.2008.211openalex-snapshot

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

inferredcites →https://doi.org/10.1038/nprot.2013.150openalex-snapshot

Target analysis by integration of transcriptome and ChIP-seq data with BETA

inferredcites →https://doi.org/10.1038/nrc.2017.35openalex-snapshot

Transposable elements in cancer

inferredcites →https://doi.org/10.1038/s41467-018-07528-9openalex-snapshot

A non-canonical BRD9-containing BAF chromatin remodeling complex regulates naive pluripotency in mouse embryonic stem cells

inferredcites →https://doi.org/10.1038/s41467-018-08006-yopenalex-snapshot

Transposable elements are regulated by context-specific patterns of chromatin marks in mouse embryonic stem cells

inferredcites →https://doi.org/10.1038/s41467-018-08244-0openalex-snapshot

An integrated chromatin accessibility and transcriptome landscape of human pre-implantation embryos

inferredcites →https://doi.org/10.1038/s41556-018-0093-4openalex-snapshot

Reprogramming of H3K9me3-dependent heterochromatin during mammalian embryo development

inferredcites →https://doi.org/10.1038/s41588-017-0015-6openalex-snapshot

Identification of H3K4me1-associated proteins at mammalian enhancers

inferredcites →https://doi.org/10.1038/s41588-017-0016-5openalex-snapshot

A molecular roadmap for the emergence of early-embryonic-like cells in culture

inferredcites →https://doi.org/10.1038/s41588-018-0060-9openalex-snapshot

RNA-dependent chromatin targeting of TET2 for endogenous retrovirus control in pluripotent stem cells

inferredcites →https://doi.org/10.1038/s41588-019-0418-7openalex-snapshot

Loss of DUX causes minor defects in zygotic genome activation and is compatible with mouse development

inferredcites →https://doi.org/10.1038/srep00208openalex-snapshot

Zscan4 transiently reactivates early embryonic genes during the generation of induced pluripotent stem cells

inferredcites →https://doi.org/10.1073/pnas.0407585101openalex-snapshot

A requirement for breast-cancer-associated gene 1 (BRCA1) in the spindle checkpoint

inferredcites →https://doi.org/10.1073/pnas.0506580102openalex-snapshot

Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles

inferredcites →https://doi.org/10.1073/pnas.1014660108openalex-snapshot

Lysine methyltransferase G9a is required for de novo DNA methylation and the establishment, but not the maintenance, of proviral silencing

inferredcites →https://doi.org/10.1073/pnas.1322273111openalex-snapshot

Regulation of DNA methylation turnover at LTR retrotransposons and imprinted loci by the histone methyltransferase Setdb1

inferredcites →https://doi.org/10.1073/pnas.1422187112openalex-snapshot

The histone methyltransferase SETDB1 represses endogenous and exogenous retroviruses in B lymphocytes

inferredcites →https://doi.org/10.1093/bioinformatics/16.11.1040openalex-snapshot

MaskerAid : a performance enhancement to RepeatMasker

inferredcites →https://doi.org/10.1093/bioinformatics/btr167openalex-snapshot

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications

inferredcites →https://doi.org/10.1093/bioinformatics/btr189openalex-snapshot

MEME-ChIP: motif analysis of large DNA datasets

inferredcites →https://doi.org/10.1093/bioinformatics/btt656openalex-snapshot

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

inferredcites →https://doi.org/10.1093/bioinformatics/btv422openalex-snapshot

TEtranscripts: a package for including transposable elements in differential expression analysis of RNA-seq datasets

inferredcites →https://doi.org/10.1093/dnares/dsv013openalex-snapshot

Transient bursts of Zscan4 expression are accompanied by the rapid derepression of heterochromatin in mouse embryonic stem cells

inferredcites →https://doi.org/10.1093/nar/gkm415openalex-snapshot

DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists

inferredcites →https://doi.org/10.1093/nar/gku365openalex-snapshot

deepTools: a flexible platform for exploring deep-sequencing data

inferredcites →https://doi.org/10.1093/nar/gkv1272openalex-snapshot

The Dfam database of repetitive DNA families

inferredcites →https://doi.org/10.1101/445148openalex-snapshot

The GBAF chromatin remodeling complex binds H3K27ac and mediates enhancer transcription

inferredcites →https://doi.org/10.1101/gad.2008511openalex-snapshot

Endogenous retroviruses and neighboring genes are coordinately repressed by LSD1/KDM1A

inferredcites →https://doi.org/10.1101/gad.321174.118openalex-snapshot

Dppa2 and Dppa4 directly regulate the Dux-driven zygotic transcriptional program

inferredcites →https://doi.org/10.1128/jvi.71.7.5652-5657.1997openalex-snapshot

Cloning of a new murine endogenous retrovirus, MuERV-L, with strong similarity to the human HERV-L element and with a gag coding sequence closely related to the Fv1 restriction gene

inferredcites →https://doi.org/10.1186/1471-2105-9-559openalex-snapshot

WGCNA: an R package for weighted correlation network analysis

inferredcites →https://doi.org/10.1186/1471-2164-13-424openalex-snapshot

H3K9 and H3K14 acetylation co-occur at many gene regulatory elements, while H3K14ac marks a subset of inactive inducible promoters in mouse embryonic stem cells

inferredcites →https://doi.org/10.1186/1756-8935-6-15openalex-snapshot

Distinct roles of KAP1, HP1 and G9a/GLP in silencing of the two-cell-specific retrotransposon MERVL in mouse ES cells

inferredcites →https://doi.org/10.1186/gb-2012-13-10-r89openalex-snapshot

Epigenetic interplay between mouse endogenous retroviruses and host genes

inferredcites →https://doi.org/10.1186/s12977-015-0173-5openalex-snapshot

Retrotransposons shape species-specific embryonic stem cell gene expression

inferredcites →https://doi.org/10.1186/s13059-015-0706-1openalex-snapshot

Single-cell RNA-seq transcriptome analysis of linear and circular RNAs in mouse preimplantation embryos

inferredcites →https://doi.org/10.1186/s13100-016-0080-xopenalex-snapshot

Endogenous retroviral promoter exaptation in human cancer

inferredcites →https://doi.org/10.1242/dev.177725openalex-snapshot

DUX is a non-essential synchronizer of zygotic genome activation

inferredcites →https://doi.org/10.1371/journal.pbio.3000324openalex-snapshot

DPPA2/4 and SUMO E3 ligase PIAS4 opposingly regulate zygotic transcriptional program

inferredcites →https://doi.org/10.14806/ej.17.1.200openalex-snapshot

Cutadapt removes adapter sequences from high-throughput sequencing reads

inferredcites →https://doi.org/10.14806/ej.17.a.245openalex-snapshot

Report of the EMBnet AGM 2011 Workshop

inferredcites →https://doi.org/10.15252/embr.201847382openalex-snapshot

DPPA2 and DPPA4 are necessary to establish a 2C‐like state in mouse embryonic stem cells

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.3869899openalex-extracted

inferred← citeshttps://doi.org/10.1002/jcp.31222openalex-snapshot

Epigenetic reprogramming in the transition from pluripotency to totipotency

inferred← citeshttps://doi.org/10.1007/s12038-021-00139-5openalex-snapshot

Understanding the role of Beclin1 in mouse embryonic stem cell differentiation through CRISPR-Cas9-mediated gene editing

inferred← citeshttps://doi.org/10.1007/s13238-020-00757-zopenalex-snapshot

Insights into epigenetic patterns in mammalian early embryos

inferred← citeshttps://doi.org/10.1016/j.bbamcr.2025.119925openalex-snapshot

Totipotent-like reprogramming: Molecular machineries and chemical manipulations

inferred← citeshttps://doi.org/10.1016/j.bbrc.2019.11.114openalex-snapshot

H3.3 impedes zygotic transcriptional program activated by Dux

inferred← citeshttps://doi.org/10.1016/j.celrep.2023.112867openalex-snapshot

POGZ Suppresses 2C Transcriptional Program and Retrotransposable Elements

inferred← citeshttps://doi.org/10.1016/j.celrep.2024.114077openalex-snapshot

The dynamic landscape of enhancer-derived RNA during mouse early embryo development

inferred← citeshttps://doi.org/10.1016/j.celrep.2025.115757openalex-snapshot

SPT6 regulates H3K14Ac deposition in mouse embryonic stem cells

inferred← citeshttps://doi.org/10.1016/j.celrep.2025.116385openalex-snapshot

LEUTX and OTX2 orchestrate totipotency-to-pluripotency transitions and heterogeneity in pEPSCs

inferred← citeshttps://doi.org/10.1016/j.celrep.2025.116654openalex-snapshot

The exit of naive pluripotency contains a metabolism-induced checkpoint for telomere homeostasis

inferred← citeshttps://doi.org/10.1016/j.cels.2020.06.004openalex-snapshot

A Single-Cell Transcriptomics CRISPR-Activation Screen Identifies Epigenetic Regulators of the Zygotic Genome Activation Program

inferred← citeshttps://doi.org/10.1016/j.isci.2025.113474openalex-snapshot

Sex-specific expression and function of TRIM28 during mouse primordial germ differentiation

inferred← citeshttps://doi.org/10.1016/j.jbc.2021.101367openalex-snapshot

Loss of full-length DNA replication regulator Rif1 in two-cell embryos is associated with zygotic transcriptional activation

inferred← citeshttps://doi.org/10.1016/j.jbc.2025.108479openalex-snapshot

YTHDF2 suppresses the 2C-like state in mouse embryonic stem cells via the DUX-ZSCAN4 molecular circuit

inferred← citeshttps://doi.org/10.1016/j.jgg.2020.02.003openalex-snapshot

Lessons from expanded potential of embryonic stem cells: Moving toward totipotency

inferred← citeshttps://doi.org/10.1016/j.molcel.2020.06.001openalex-snapshot

Analysis of Genome Architecture during SCNT Reveals a Role of Cohesin in Impeding Minor ZGA

inferred← citeshttps://doi.org/10.1016/j.scr.2022.102857openalex-snapshot

A critical review on induced totipotent stem cells: Types and methods

inferred← citeshttps://doi.org/10.1016/j.stemcr.2022.03.005openalex-snapshot

TIN2 deficiency leads to ALT-associated phenotypes and differentiation defects in embryonic stem cells

inferred← citeshttps://doi.org/10.1016/j.stemcr.2022.08.009openalex-snapshot

PIM3-AMPK-HDAC4/5 axis restricts MuERVL-marked 2-cell-like state in embryonic stem cells

inferred← citeshttps://doi.org/10.1016/j.stemcr.2022.12.006openalex-snapshot

Remodeling of H3K9me3 during the pluripotent to totipotent-like state transition

inferred← citeshttps://doi.org/10.1016/j.stemcr.2022.12.007openalex-snapshot

Ribosomal proteins regulate 2-cell-stage transcriptome in mouse embryonic stem cells

inferred← citeshttps://doi.org/10.1016/j.theriogenology.2021.12.020openalex-snapshot

Lnc5926 is essential for early embryonic development in goats through regulation of ZSCAN4 and EIF1AX

inferred← citeshttps://doi.org/10.1016/j.tig.2021.06.017openalex-snapshot

There is another: H3K27me3-mediated genomic imprinting

inferred← citeshttps://doi.org/10.1016/j.tig.2023.10.010openalex-snapshot

Retrotransposon renaissance in early embryos

inferred← citeshttps://doi.org/10.1016/j.tig.2023.10.013openalex-snapshot

Genome stability from the perspective of telomere length

inferred← citeshttps://doi.org/10.1038/s41422-019-0238-4openalex-snapshot

Precise temporal regulation of Dux is important for embryo development

inferred← citeshttps://doi.org/10.1038/s41422-023-00887-zopenalex-snapshot

NR5A2 connects zygotic genome activation to the first lineage segregation in totipotent embryos

inferred← citeshttps://doi.org/10.1038/s41467-018-08244-0openalex-snapshot

An integrated chromatin accessibility and transcriptome landscape of human pre-implantation embryos

inferred← citeshttps://doi.org/10.1038/s41467-023-39344-1openalex-snapshot

Selective binding of retrotransposons by ZFP352 facilitates the timely dissolution of totipotency network

inferred← citeshttps://doi.org/10.1038/s41467-024-53114-7openalex-snapshot

MATES: a deep learning-based model for locus-specific quantification of transposable elements in single cell

inferred← citeshttps://doi.org/10.1038/s41467-025-60389-xopenalex-snapshot

Klf5-adjacent super-enhancer functions as a 3D genome structure-dependent transcriptional driver to safeguard ESC identity

inferred← citeshttps://doi.org/10.1038/s41467-025-62303-xopenalex-snapshot

USP17L promotes the 2-cell-like program through deubiquitination of H2AK119ub1 and ZSCAN4

inferred← citeshttps://doi.org/10.1038/s41580-022-00457-yopenalex-snapshot

Roles of transposable elements in the regulation of mammalian transcription

inferred← citeshttps://doi.org/10.1038/s41580-024-00772-6openalex-snapshot

Rise and SINE: roles of transcription factors and retrotransposons in zygotic genome activation

inferred← citeshttps://doi.org/10.1038/s41586-020-2959-4openalex-snapshot

TRF2-mediated telomere protection is dispensable in pluripotent stem cells

inferred← citeshttps://doi.org/10.1038/s41586-025-08656-1openalex-snapshot

Genome-coverage single-cell histone modifications for embryo lineage tracing

inferred← citeshttps://doi.org/10.1038/s41586-025-08838-xopenalex-snapshot

Spatial multi-omics reveals cell-type-specific nuclear compartments

inferred← citeshttps://doi.org/10.1038/s41587-021-01093-1openalex-snapshot

Locus-specific expression of transposable elements in single cells with CELLO-seq

inferred← citeshttps://doi.org/10.1038/s41594-023-01038-zopenalex-snapshot

A genome-wide screen reveals new regulators of the 2-cell-like cell state

inferred← citeshttps://doi.org/10.1038/s42003-024-06507-9openalex-snapshot

A CRISPR/Cas9 screen in embryonic stem cells reveals that Mdm2 regulates totipotency exit

inferred← citeshttps://doi.org/10.1073/pnas.2209062120openalex-snapshot

Atf7ip and Setdb1 interaction orchestrates the hematopoietic stem and progenitor cell state with diverse lineage differentiation

inferred← citeshttps://doi.org/10.1073/pnas.2407490121openalex-snapshot

Zscan4 mediates ubiquitination and degradation of the corepressor complex to promote chromatin accessibility in 2C-like cells

inferred← citeshttps://doi.org/10.1093/bib/bbaa342openalex-snapshot

Dppa2/4 as a trigger of signaling pathways to promote zygote genome activation by binding to CG-rich region

inferred← citeshttps://doi.org/10.1093/biolre/ioab141openalex-snapshot

Functional study of distinct domains of Dux in improving mouse SCNT embryonic development†

inferred← citeshttps://doi.org/10.1093/biolre/ioab173openalex-snapshot

Genome activation in equine in vitro–produced embryos

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Dissecting the molecular features of bovine-arrested eight-cell embryos using single-cell multi-omics sequencing

inferred← citeshttps://doi.org/10.1093/biolre/ioaf050openalex-snapshot

Zinc eluted from glassware is a risk factor for embryo development in human and animal assisted reproduction

inferred← citeshttps://doi.org/10.1093/dnares/dsad029openalex-snapshot

ZSCAN4-binding motif—TGCACAC is conserved and enriched in CA/TG microsatellites in both mouse and human genomes

inferred← citeshttps://doi.org/10.1093/jmcb/mjad052openalex-snapshot

Regulation of endogenous retroviruses in murine embryonic stem cells and early embryos

inferred← citeshttps://doi.org/10.1093/nar/gkaa732openalex-snapshot

Histone chaperone FACT represses retrotransposon MERVL and MERVL-derived cryptic promoters

inferred← citeshttps://doi.org/10.1093/nar/gkac468openalex-snapshot

USP16-mediated histone H2A lysine-119 deubiquitination during oocyte maturation is a prerequisite for zygotic genome activation

inferred← citeshttps://doi.org/10.1093/nar/gkad219openalex-snapshot

RBBP4 is an epigenetic barrier for the induced transition of pluripotent stem cells into totipotent 2C-like cells

inferred← citeshttps://doi.org/10.1093/nar/gkad640openalex-snapshot

Dot1l cooperates with Npm1 to repress endogenous retrovirus MERVL in embryonic stem cells

inferred← citeshttps://doi.org/10.1093/nar/gkaf349openalex-snapshot

METTL3-dependent m6A RNA methylation regulates transposable elements and represses human naïve pluripotency through transposable element-derived enhancers

inferred← citeshttps://doi.org/10.1093/nar/gkz863openalex-snapshot

ZAR1 and ZAR2 are required for oocyte meiotic maturation by regulating the maternal transcriptome and mRNA translational activation

inferred← citeshttps://doi.org/10.1101/2020.03.18.998013openalex-snapshot

Dppa2/4 promotes zygotic genome activation by binding to GC-rich region in signaling pathways

inferred← citeshttps://doi.org/10.1101/2020.10.02.322073openalex-snapshot

Transposable element expression at unique loci in single cells with CELLO-seq

inferred← citeshttps://doi.org/10.1101/2021.05.01.442081openalex-snapshot

Foxd3 controls heterochromatin-mediated silencing of repeat elements in mouse embryonic stem cells and represses the 2-cell transcription program

inferred← citeshttps://doi.org/10.1101/2021.11.02.467017openalex-snapshot

RAP1 regulates TIP60 function during fate transition between 2 cell-like and pluripotent states

inferred← citeshttps://doi.org/10.1101/2022.07.20.500739openalex-snapshot

Transcription of Murine Endogenous Retrovirus MERVL Is Required for Progression of Development in Early Preimplantation Embryos

inferred← citeshttps://doi.org/10.1101/2022.11.25.518012openalex-snapshot

NR5A2 connects genome activation to the first lineage segregation in early mouse development

inferred← citeshttps://doi.org/10.1101/2024.11.18.624083openalex-snapshot

Lrif1 modulates Trim28-mediated repression of the Dux locus in mouse embryonic stem cells

inferred← citeshttps://doi.org/10.1101/2024.12.18.629181openalex-snapshot

Coordinated repression of totipotency-associated gene loci by histone methyltransferase EHMT2 through binding to LINE-1 regulatory elements

inferred← citeshttps://doi.org/10.1101/2025.03.27.645817openalex-snapshot

Kinetic organization of the genome revealed by ultra-resolution, multiscale live imaging

inferred← citeshttps://doi.org/10.1101/2025.08.21.671216openalex-snapshot

REFEE Shapes ZGA Through Post-Transcriptional Regulation of Repetitive RNAs in Mouse Embryos

inferred← citeshttps://doi.org/10.1101/2025.10.14.682353openalex-snapshot

Induction of cellular totipotency by NACC1-driven feed-forward regulation

inferred← citeshttps://doi.org/10.1101/cshperspect.a039677openalex-snapshot

Epigenetic Reprogramming in Early Animal Development

inferred← citeshttps://doi.org/10.1101/gad.349039.121openalex-snapshot

Rap1 regulates TIP60 function during fate transition between two-cell-like and pluripotent states

inferred← citeshttps://doi.org/10.1101/gad.352270.124openalex-snapshot

The transcription factor SRF regulates MERVL retrotransposons and gene expression during zygotic genome activation

inferred← citeshttps://doi.org/10.1101/gr.260745.120openalex-snapshot

A plug and play microfluidic platform for standardized sensitive low-input chromatin immunoprecipitation

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RNA m 6 A modification regulates cell fate transition between pluripotent stem cells and 2‐cell‐like cells

inferred← citeshttps://doi.org/10.1111/gtc.13070openalex-snapshot

The role of Zfp352 in the regulation of transient expression of 2‐cell specific genes in mouse embryonic stem cells

inferred← citeshttps://doi.org/10.1126/sciadv.abb9149openalex-snapshot

The chromosomal protein SMCHD1 regulates DNA methylation and the 2c-like state of embryonic stem cells by antagonizing TET proteins

inferred← citeshttps://doi.org/10.1126/sciadv.abm0478openalex-snapshot

eIF4A2 targets developmental potency and histone H3.3 transcripts for translational control of stem cell pluripotency

inferred← citeshttps://doi.org/10.1126/science.adx2202openalex-snapshot

RETRACTED: Kinetic organization of the genome revealed by ultraresolution multiscale live imaging

inferred← citeshttps://doi.org/10.1155/2021/1624669openalex-snapshot

Transposable Element Dynamics and Regulation during Zygotic Genome Activation in Mammalian Embryos and Embryonic Stem Cell Model Systems

inferred← citeshttps://doi.org/10.1155/2021/6663960openalex-snapshot

Nsd2 Represses Endogenous Retrovirus MERVL in Embryonic Stem Cells

inferred← citeshttps://doi.org/10.1186/s12929-021-00754-2openalex-snapshot

More than causing (epi)genomic instability: emerging physiological implications of transposable element modulation

inferred← citeshttps://doi.org/10.1186/s13059-021-02417-9openalex-snapshot

Elevated retrotransposon activity and genomic instability in primed pluripotent stem cells

inferred← citeshttps://doi.org/10.1186/s13287-022-02814-2openalex-snapshot

Histone chaperone HIRA complex regulates retrotransposons in embryonic stem cells

inferred← citeshttps://doi.org/10.1242/dev.200044openalex-snapshot

The H3.3 chaperone Hira complex orchestrates oocyte developmental competence

inferred← citeshttps://doi.org/10.1262/jrd.2021-007openalex-snapshot

Transcription factor OTX2 silences the expression of cleavage embryo genes and transposable elements

inferred← citeshttps://doi.org/10.1262/jrd.2021-065openalex-snapshot

Cleavage-embryo genes and transposable elements are regulated by histone variant H2A.X

inferred← citeshttps://doi.org/10.1360/tb-2023-1012openalex-snapshot

Young LINE1 reshapes stem cell fate

inferred← citeshttps://doi.org/10.1371/journal.pbio.3002505openalex-snapshot

Single-cell analysis of isoform switching and transposable element expression during preimplantation embryonic development

inferred← citeshttps://doi.org/10.15252/embr.202153180openalex-snapshot

Foxd3 controls heterochromatin-mediated repression of repeat elements and 2-cell state transcription

inferred← citeshttps://doi.org/10.3389/fcell.2021.637309openalex-snapshot

Chromatin and Epigenetic Rearrangements in Embryonic Stem Cell Fate Transitions

inferred← citeshttps://doi.org/10.3389/fcell.2022.1024093openalex-snapshot

The regulation of totipotency transcription: Perspective from in vitro and in vivo totipotency

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Advances in understanding the regulation of pluripotency fate transition in embryonic stem cells

inferred← citeshttps://doi.org/10.3390/biom13121750openalex-snapshot

When Dad’s Stress Gets under Kid’s Skin—Impacts of Stress on Germline Cargo and Embryonic Development

inferred← citeshttps://doi.org/10.3390/biom14030280openalex-snapshot

Species-Specific Transcription Factors Associated with Long Terminal Repeat Promoters of Endogenous Retroviruses: A Comprehensive Review

inferred← citeshttps://doi.org/10.3390/cells11030548openalex-snapshot

Lactate Activates Germline and Cleavage Embryo Genes in Mouse Embryonic Stem Cells

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DUX: One Transcription Factor Controls 2-Cell-like Fate

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Transcriptional Regulation of Endogenous Retroviruses and Their Misregulation in Human Diseases

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Repetitive Sequence Stability in Embryonic Stem Cells

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Host Gene Regulation by Transposable Elements: The New, the Old and the Ugly

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Transcription of Endogenous Retroviruses: Broad and Precise Mechanisms of Control

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Characterizing Cellular Differentiation Potency and Waddington Landscape via Energy Indicator

inferred← citeshttps://doi.org/10.6084/m9.figshare.14944912openalex-snapshot

Additional file 1 of Elevated retrotransposon activity and genomic instability in primed pluripotent stem cells

inferred← citeshttps://doi.org/10.6084/m9.figshare.14944915openalex-snapshot

Additional file 2 of Elevated retrotransposon activity and genomic instability in primed pluripotent stem cells

inferred← citeshttps://doi.org/10.6084/m9.figshare.14944921openalex-snapshot

Additional file 3 of Elevated retrotransposon activity and genomic instability in primed pluripotent stem cells

inferred← citeshttps://doi.org/10.6084/m9.figshare.14944924openalex-snapshot

Additional file 4 of Elevated retrotransposon activity and genomic instability in primed pluripotent stem cells

inferred← citeshttps://doi.org/10.6084/m9.figshare.14944927openalex-snapshot

Additional file 5 of Elevated retrotransposon activity and genomic instability in primed pluripotent stem cells

inferred← citeshttps://doi.org/10.6084/m9.figshare.14944930openalex-snapshot

Additional file 6 of Elevated retrotransposon activity and genomic instability in primed pluripotent stem cells

inferred← citeshttps://doi.org/10.6084/m9.figshare.14944933openalex-snapshot

Additional file 7 of Elevated retrotransposon activity and genomic instability in primed pluripotent stem cells

inferred← citeshttps://doi.org/10.6084/m9.figshare.14944936openalex-snapshot

Additional file 8 of Elevated retrotransposon activity and genomic instability in primed pluripotent stem cells

inferred← citeshttps://doi.org/10.64898/2026.08.18.745473openalex-snapshot

Rapid and efficient generation of human 8-cell-like cells for embryo modelling

inferred← citeshttps://doi.org/10.64898/2026.08.22.746432openalex-snapshot

TEDDY: An integrative workflow for TE-chimeric isoform reconstruction and systematic characterization of TE-dependent transcriptional regulation

inferred← citeshttps://doi.org/10.70675/667cf32cz1485z429cz8bdcze29097a032e5openalex-snapshot

Identification systématique de nouveaux régulateurs épigénétiques par criblage CRISPR-Cas9 pangénomique

inferred← citeshttps://doi.org/10.70675/d6a87136z1044z4451z9156z5fd79eb81affopenalex-snapshot

L1 retrotransposon activity in muscle cells

inferred← citeshttps://doi.org/10.7554/elife.94502openalex-snapshot

Post-fertilization transcription initiation in an ancestral LTR retrotransposon drives lineage-specific genomic imprinting of ZDBF2

inferred← citeshttps://doi.org/10.7554/elife.94502.1openalex-snapshot

Post-fertilization transcription initiation in an ancestral LTR retrotransposon drives lineage-specific genomic imprinting of ZDBF2

inferred← citeshttps://doi.org/10.7554/elife.94502.2openalex-snapshot

Post-fertilization transcription initiation in an ancestral LTR retrotransposon drives lineage-specific genomic imprinting of ZDBF2

inferred← citeshttps://doi.org/10.7554/elife.94502.3openalex-snapshot

Post-fertilization transcription initiation in an ancestral LTR retrotransposon drives lineage-specific genomic imprinting of ZDBF2

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