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Bridging the divide: bacteria synthesizing archaeal membrane lipids

https://doi.org/10.1101/448035
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Functional Assignment of an Enzyme that Catalyzes the Synthesis of an Archaea‐Type Ether Lipid in Bacteria
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Selective forces for the origin of the eukaryotic nucleus
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Over-production of Proteins inEscherichia coli: Mutant Hosts that Allow Synthesis of some Membrane Proteins and Globular Proteins at High Levels
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Did Archaeal and Bacterial Cells Arise Independently from Noncellular Precursors? A Hypothesis Stating That the Advent of Membrane Phospholipid with Enantiomeric Glycerophosphate Backbones Caused the Separation of the Two Lines of Descent
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Symbiosis Between Methanogenic Archaea and δ-Proteobacteria as the Origin of Eukaryotes: The Syntrophic Hypothesis
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Did Archaeal and Bacterial Cells Arise Independently from Noncellular Precursors? A Hypothesis Stating That the Advent of Membrane Phospholipid with Enantiomeric Glycerophosphate Backbones Caused the Separation of the Two Lines of Descent
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Structural characterization of diabolic acid-based tetraester, tetraether and mixed ether/ester, membrane-spanning lipids of bacteria from the order Thermotogales
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Early Evolution of Membrane Lipids: How did the Lipid Divide Occur?
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Identification of CDP-Archaeol Synthase, a Missing Link of Ether Lipid Biosynthesis in Archaea
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An overview of the occurrence of ether- and ester-linked iso-diabolic acid membrane lipids in microbial cultures of the Acidobacteria: Implications for brGDGT paleoproxies for temperature and pH
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Bacterial lipids: Metabolism and membrane homeostasis
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Phospholipid analysis as a tool to study complex microbial communities in marine sediments
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Phospholipid etherlipid and phospholipid fatty acid fingerprints in selected euryarchaeotal monocultures for taxonomic profiling
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Aquifex pyrophilus gen. nov. sp. nov., Represents a Novel Group of Marine Hyperthermophilic Hydrogen-Oxidizing Bacteria
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Iso- and Anteiso-Branched Glycerol Diethers of the Thermophilic Anaerobe Thermodesulfotobacterium commune
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Formation of Ammonium from Nitrate During Chemolithoautotrophic Growth of the Extremely Thermophilic Bacterium Ammonifex degensii gen. nov. sp. nov.
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Stability of Heterochiral Hybrid Membrane Made of Bacterial sn-G3P Lipids and Archaeal sn-G1P Lipids
inferredcites →https://doi.org/10.1021/bi8005779openalex-snapshot
Identification and Characterization of a Bacterial Glycerol-1-phosphate Dehydrogenase: Ni2+-Dependent AraM from Bacillus subtilis
inferredcites →https://doi.org/10.1021/jo00067a025openalex-snapshot
Biosynthesis of Archaebacterial lipids in Halobacterium halobium and Methanobacterium thermoautotrophicum
inferredcites →https://doi.org/10.1038/32096openalex-snapshot
The hydrogen hypothesis for the first eukaryote
inferredcites →https://doi.org/10.1038/msb.2011.75openalex-snapshot
Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega
inferredcites →https://doi.org/10.1038/nature01128openalex-snapshot
Linearly concatenated cyclobutane lipids form a dense bacterial membrane
inferredcites →https://doi.org/10.1038/nature21031openalex-snapshot
Asgard archaea illuminate the origin of eukaryotic cellular complexity
inferredcites →https://doi.org/10.1038/nmeth.4285openalex-snapshot
ModelFinder: fast model selection for accurate phylogenetic estimates
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A new view of the tree of life
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Archaea and the origin of eukaryotes
inferredcites →https://doi.org/10.1038/nrmicro.2017.154openalex-snapshot
Erratum: Archaea and the origin of eukaryotes
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The early evolution of lipid membranes and the three domains of life
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A re-evaluation of the archaeal membrane lipid biosynthetic pathway
inferredcites →https://doi.org/10.1039/b409806dopenalex-snapshot
A mixed ladderane/n-alkyl glycerol diether membrane lipid in an anaerobic ammonium-oxidizing bacterium
inferredcites →https://doi.org/10.1039/c39880001300openalex-snapshot
A new 15,16-dimethyl-30-glyceryloxytriacontanoic acid from lipids of Thermotoga maritima
inferredcites →https://doi.org/10.1042/bj20150626openalex-snapshot
Formation of the ether lipids archaetidylglycerol and archaetidylethanolamine in Escherichia coli
inferredcites →https://doi.org/10.1046/j.1365-2958.2003.03267.xopenalex-snapshot
From pre‐cells to Eukarya – a tale of two lipids
inferredcites →https://doi.org/10.1073/pnas.0810647105openalex-snapshot
The archaebacterial origin of eukaryotes
inferredcites →https://doi.org/10.1073/pnas.0811118106openalex-snapshot
The eocyte hypothesis and the origin of eukaryotic cells
inferredcites →https://doi.org/10.1073/pnas.1721604115openalex-snapshot
Converting Escherichia coli into an archaebacterium with a hybrid heterochiral membrane
inferredcites →https://doi.org/10.1093/bioinformatics/btp348openalex-snapshot
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/bioinformatics/btu153openalex-snapshot
Prokka: rapid prokaryotic genome annotation
inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1093/molbev/msu300openalex-snapshot
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
inferredcites →https://doi.org/10.1093/molbev/msx281openalex-snapshot
UFBoot2: Improving the Ultrafast Bootstrap Approximation
inferredcites →https://doi.org/10.1093/nar/gkl842openalex-snapshot
NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
inferredcites →https://doi.org/10.1093/nar/gks1219openalex-snapshot
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
inferredcites →https://doi.org/10.1093/nar/gkw1017openalex-snapshot
Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center
inferredcites →https://doi.org/10.1093/nar/gkw290openalex-snapshot
Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
inferredcites →https://doi.org/10.1093/nar/gkx1094openalex-snapshot
GenBank
inferredcites →https://doi.org/10.1098/rstb.2002.1183openalex-snapshot
On the origins of cells: a hypothesis for the evolutionary transitions from abiotic geochemistry to chemoautotrophic prokaryotes, and from prokaryotes to nucleated cells
inferredcites →https://doi.org/10.1101/gr.186072.114openalex-snapshot
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
inferredcites →https://doi.org/10.1101/gr.213959.116openalex-snapshot
metaSPAdes: a new versatile metagenomic assembler
inferredcites →https://doi.org/10.1111/1462-2920.13361openalex-snapshot
Phylogenomic analysis of lipid biosynthetic genes of Archaea shed light on the ‘lipid divide’
inferredcites →https://doi.org/10.1111/j.1462-2920.2005.00941.xopenalex-snapshot
Membrane lipids of mesophilic anaerobic bacteria thriving in peats have typical archaeal traits
inferredcites →https://doi.org/10.1111/mmi.12596openalex-snapshot
A comprehensive analysis of the geranylgeranylglyceryl phosphate synthase enzyme family identifies novel members and reveals mechanisms of substrate specificity and quaternary structure organization
inferredcites →https://doi.org/10.1126/science.1162870openalex-snapshot
Ironing Out Ocean Chemistry at the Dawn of Animal Life
inferredcites →https://doi.org/10.1128/aem.00324-15openalex-snapshot
Abundant Trimethylornithine Lipids and Specific Gene Sequences Are Indicative of Planctomycete Importance at the Oxic/Anoxic Interface in Sphagnum-Dominated Northern Wetlands
inferredcites →https://doi.org/10.1128/aem.00466-11openalex-snapshot
13,16-Dimethyl Octacosanedioic Acid ( iso -Diabolic Acid), a Common Membrane-Spanning Lipid of Acidobacteria Subdivisions 1 and 3
inferredcites →https://doi.org/10.1128/aem.70.12.7251-7259.2004openalex-snapshot
In Situ Expression of nifD in Geobacteraceae in Subsurface Sediments
inferredcites →https://doi.org/10.1128/jb.00927-13openalex-snapshot
Geranylgeranyl Reductase and Ferredoxin from Methanosarcina acetivorans Are Required for the Synthesis of Fully Reduced Archaeal Membrane Lipid in Escherichia coli Cells
inferredcites →https://doi.org/10.1128/mmbr.00033-06openalex-snapshot
Biosynthesis of Ether-Type Polar Lipids in Archaea and Evolutionary Considerations
inferredcites →https://doi.org/10.1155/2012/438931openalex-snapshot
Archaeal Phospholipid Biosynthetic Pathway Reconstructed inEscherichia coli
inferredcites →https://doi.org/10.1155/2012/630910openalex-snapshot
Phylogenomic Investigation of Phospholipid Synthesis in Archaea
inferredcites →https://doi.org/10.1186/1471-2164-9-75openalex-snapshot
The RAST Server: Rapid Annotations using Subsystems Technology
inferredcites →https://doi.org/10.1186/1472-6750-11-92openalex-snapshot
FastCloning: a highly simplified, purification-free, sequence- and ligation-independent PCR cloning method
inferredcites →https://doi.org/10.1371/journal.pbio.1001926openalex-snapshot
A Bioenergetic Basis for Membrane Divergence in Archaea and Bacteria
inferredcites →https://doi.org/10.3390/biology1030895openalex-snapshot
FLEXBAR—Flexible Barcode and Adapter Processing for Next-Generation Sequencing Platforms
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Aligning sequence reads, clone sequences and assembly con*gs with BWA-MEM
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MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Acid digestion and symbiont: Proton sharing at the origin of mitochondriogenesis?
inferred← citeshttps://doi.org/10.1002/cbic.202100232openalex-snapshot
Probing the Role of Chirality in Phospholipid Membranes
inferred← citeshttps://doi.org/10.1007/s00709-019-01442-7openalex-snapshot
Multidomain ribosomal protein trees and the planctobacterial origin of neomura (eukaryotes, archaebacteria)
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Is it possible that cells have had more than one origin?
inferred← citeshttps://doi.org/10.1016/j.orggeochem.2019.04.001openalex-snapshot
Current progress and future trends in mass spectrometry-based archaeal lipidomics
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The trickster microbes that are shaking up the tree of life
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The LUCA and its complex virome
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Investigating the Origins of Membrane Phospholipid Biosynthesis Genes Using Outgroup-Free Rooting
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The Major Lines of Descent
inferred← citeshttps://doi.org/10.1101/2020.08.20.260398openalex-snapshot
Phenotypic reconstruction of the last universal common ancestor reveals a complex cell
inferred← citeshttps://doi.org/10.1101/312991openalex-snapshot
Resolving the origins of membrane phospholipid biosynthesis genes using outgroupfree rooting
inferred← citeshttps://doi.org/10.1111/1462-2920.14902openalex-snapshot
A diverse uncultivated microbial community is responsible for organic matter degradation in the Black Sea sulphidic zone
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Deciphering Symbiotic Interactions of “ Candidatus Aenigmarchaeota” with Inferred Horizontal Gene Transfers and Co-occurrence Networks
inferred← citeshttps://doi.org/10.1186/s13062-020-00262-7openalex-snapshot
The archaeal-bacterial lipid divide, could a distinct lateral proton route hold the answer?
inferred← citeshttps://doi.org/10.33540/117openalex-snapshot
The role of microorganisms in the cycling of organic matter in anoxic marine environments
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