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Orc4 spatiotemporally stabilizes centromeric chromatin

https://doi.org/10.1101/465880
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Distantly related sequences in the alpha‐ and beta‐subunits of ATP synthase, myosin, kinases and other ATP‐requiring enzymes and a common nucleotide binding fold.
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Fast Parallel Algorithms for Short-Range Molecular Dynamics
inferredcites →https://doi.org/10.1016/j.cell.2009.02.039openalex-snapshot
Centromere-Specific Assembly of CENP-A Nucleosomes Is Mediated by HJURP
inferredcites →https://doi.org/10.1016/j.cell.2009.06.010openalex-snapshot
Common Ancestry of the CENP-A Chaperones Scm3 and HJURP
inferredcites →https://doi.org/10.1016/j.cell.2009.08.036openalex-snapshot
Major Evolutionary Transitions in Centromere Complexity
inferredcites →https://doi.org/10.1016/j.cell.2012.05.034openalex-snapshot
Cell-Cycle-Coupled Structural Oscillation of Centromeric Nucleosomes in Yeast
inferredcites →https://doi.org/10.1016/j.cub.2018.10.049openalex-snapshot
Centromere DNA Destabilizes H3 Nucleosomes to Promote CENP-A Deposition during the Cell Cycle
inferredcites →https://doi.org/10.1016/j.devcel.2018.09.003openalex-snapshot
Inheritance of CENP-A Nucleosomes during DNA Replication Requires HJURP
inferredcites →https://doi.org/10.1016/j.gene.2004.06.021openalex-snapshot
The SAT1 flipper, an optimized tool for gene disruption in Candida albicans
inferredcites →https://doi.org/10.1016/j.molcel.2009.01.017openalex-snapshot
Fission Yeast Scm3 Mediates Stable Assembly of Cnp1/CENP-A into Centromeric Chromatin
inferredcites →https://doi.org/10.1016/j.molcel.2011.12.006openalex-snapshot
Dynamics of Histone H3 Deposition In Vivo Reveal a Nucleosome Gap-Filling Mechanism for H3.3 to Maintain Chromatin Integrity
inferredcites →https://doi.org/10.1016/j.molcel.2013.05.011openalex-snapshot
Kinetochores Coordinate Pericentromeric Cohesion and Early DNA Replication by Cdc7-Dbf4 Kinase Recruitment
inferredcites →https://doi.org/10.1016/s1097-2765(01)00151-4openalex-snapshot
Nucleosomes Positioned by ORC Facilitate the Initiation of DNA Replication
inferredcites →https://doi.org/10.1023/b:chro.0000036585.44138.4bopenalex-snapshot
Chromosomal dynamics of human neocentromere formation
inferredcites →https://doi.org/10.1038/nature08973openalex-snapshot
A three-dimensional model of the yeast genome
inferredcites →https://doi.org/10.1038/nbt.1754openalex-snapshot
Integrative genomics viewer
inferredcites →https://doi.org/10.1038/nmeth.1266openalex-snapshot
High-resolution statistical mapping reveals gene territories in live yeast
inferredcites →https://doi.org/10.1038/nprot.2008.38openalex-snapshot
Chromatin immunoprecipitation (ChIP) coupled to detection by quantitative real-time PCR to study transcription factor binding to DNA in Caenorhabditis elegans
inferredcites →https://doi.org/10.1038/nprot.2012.101openalex-snapshot
Identifying ChIP-seq enrichment using MACS
inferredcites →https://doi.org/10.1038/nsmb.3055openalex-snapshot
A unique binding mode enables MCM2 to chaperone histones H3–H4 at replication forks
inferredcites →https://doi.org/10.1038/s41556-019-0331-4openalex-snapshot
DNA replication acts as an error correction mechanism to maintain centromere identity by restricting CENP-A to centromeres
inferredcites →https://doi.org/10.1038/s41598-018-27157-yopenalex-snapshot
Candida albicans Cdc15 is essential for mitotic exit and cytokinesis
inferredcites →https://doi.org/10.1038/sj.emboj.7600255openalex-snapshot
Human Orc2 localizes to centrosomes, centromeres and heterochromatin during chromosome inheritance
inferredcites →https://doi.org/10.1038/srep22989openalex-snapshot
Candida albicans repetitive elements display epigenetic diversity and plasticity
inferredcites →https://doi.org/10.1046/j.1365-2958.1999.01641.xopenalex-snapshot
The MET3 promoter: a new tool for Candida albicans molecular genetics
inferredcites →https://doi.org/10.1073/pnas.0404318101openalex-snapshot
Centromeric DNA sequences in the pathogenic yeast Candida albicans are all different and unique
inferredcites →https://doi.org/10.1073/pnas.0408811102openalex-snapshot
DNA replication origins in the Schizosaccharomyces pombe genome
inferredcites →https://doi.org/10.1073/pnas.0606958103openalex-snapshot
Formation of functional centromeric chromatin is specified epigenetically in Candida albicans
inferredcites →https://doi.org/10.1073/pnas.1009945107openalex-snapshot
Human origin recognition complex is essential for HP1 binding to chromatin and heterochromatin organization
inferredcites →https://doi.org/10.1073/pnas.162488299openalex-snapshot
The CENP-A homolog CaCse4p in the pathogenic yeast Candida albicans is a centromere protein essential for chromosome transmission
inferredcites →https://doi.org/10.1073/pnas.1713725115openalex-snapshot
RNAi is a critical determinant of centromere evolution in closely related fungi
inferredcites →https://doi.org/10.1073/pnas.1806791115openalex-snapshot
Fork pausing allows centromere DNA loop formation and kinetochore assembly
inferredcites →https://doi.org/10.1073/pnas.96.6.2656openalex-snapshot
The fission yeast homologue of Orc4p binds to replication origin DNA via multiple AT-hooks
inferredcites →https://doi.org/10.1083/jcb.200803027openalex-snapshot
Molecular architecture of the kinetochore-microtubule attachment site is conserved between point and regional centromeres
inferredcites →https://doi.org/10.1083/jcb.201701061openalex-snapshot
DNA replication timing influences gene expression level
inferredcites →https://doi.org/10.1083/jcb.201805003openalex-snapshot
3D genomic architecture reveals that neocentromeres associate with heterochromatin regions
inferredcites →https://doi.org/10.1091/mbc.e15-12-0843openalex-snapshot
HJURP interaction with the condensin II complex during G1 promotes CENP-A deposition
inferredcites →https://doi.org/10.1093/nar/gkt1417openalex-snapshot
Chromosome positioning from activity-based segregation
inferredcites →https://doi.org/10.1093/nar/gkv021openalex-snapshot
Structural insight into how the human helicase subunit MCM2 may act as a histone chaperone together with ASF1 at the replication fork
inferredcites →https://doi.org/10.1093/nar/gky064openalex-snapshot
OneD: increasing reproducibility of Hi-C samples with abnormal karyotypes
inferredcites →https://doi.org/10.1101/430892openalex-snapshot
Identification and in silico analysis of the origin recognition complex in the human fungal pathogen Candida albicans
inferredcites →https://doi.org/10.1101/cshperspect.a010116openalex-snapshot
DNA Replication Origins
inferredcites →https://doi.org/10.1101/gad.1046203openalex-snapshot
Early-replicating heterochromatin
inferredcites →https://doi.org/10.1101/gad.1084203openalex-snapshot
Sequence-independent DNA binding and replication initiation by the human origin recognition complex
inferredcites →https://doi.org/10.1101/gad.1819409openalex-snapshot
The Scc2/Scc4 cohesin loader determines the distribution of cohesin on budding yeast chromosomes
inferredcites →https://doi.org/10.1101/gad.209999.112openalex-snapshot
Location, location, location: it's all in the timing for replication origins
inferredcites →https://doi.org/10.1101/gad.449407openalex-snapshot
Kinetochore–microtubule interaction during S phase in Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1101/gad.7.11.2149openalex-snapshot
Cell cycle-regulated nuclear localization of MCM2 and MCM3, which are required for the initiation of DNA synthesis at chromosomal replication origins in yeast.
inferredcites →https://doi.org/10.1101/gr.111328.110openalex-snapshot
Bubble-chip analysis of human origin distributions demonstrates on a genomic scale significant clustering into zones and significant association with transcription
inferredcites →https://doi.org/10.1101/gr.129437.111openalex-snapshot
Physical tethering and volume exclusion determine higher-order genome organization in budding yeast
inferredcites →https://doi.org/10.1101/gr.141614.112openalex-snapshot
Efficient neocentromere formation is suppressed by gene conversion to maintain centromere function at native physical chromosomal loci in Candida albicans
inferredcites →https://doi.org/10.1101/gr.155218.113openalex-snapshot
Bubble-seq analysis of the human genome reveals distinct chromatin-mediated mechanisms for regulating early- and late-firing origins
inferredcites →https://doi.org/10.1111/mmi.14275openalex-snapshot
Aurora kinase Ipl1 facilitates bilobed distribution of clustered kinetochores to ensure error‐free chromosome segregation in Candida albicans
inferredcites →https://doi.org/10.1126/science.1066101openalex-snapshot
Genome-Wide Distribution of ORC and MCM Proteins in S. cerevisiae : High-Resolution Mapping of Replication Origins
inferredcites →https://doi.org/10.1126/science.1089814openalex-snapshot
Nucleolar Clustering of Dispersed tRNA Genes
inferredcites →https://doi.org/10.1126/science.1150944openalex-snapshot
Heterochromatin and RNAi Are Required to Establish CENP-A Chromatin at Centromeres
inferredcites →https://doi.org/10.1126/science.1181369openalex-snapshot
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
inferredcites →https://doi.org/10.1126/science.294.5540.115openalex-snapshot
Replication Dynamics of the Yeast Genome
inferredcites →https://doi.org/10.1128/mbio.01703-14openalex-snapshot
Origin Replication Complex Binding, Nucleosome Depletion Patterns, and a Primary Sequence Motif Can Predict Origins of Replication in a Genome with Epigenetic Centromeres
inferredcites →https://doi.org/10.1128/mcb.10.12.6348openalex-snapshot
Replication Timing of DNA Sequences Associated with Human Centromeres and Telomeres
inferredcites →https://doi.org/10.1128/mmbr.68.1.109-131.2004openalex-snapshot
Eukaryotic MCM Proteins: Beyond Replication Initiation
inferredcites →https://doi.org/10.1146/annurev.cellbio.13.1.293openalex-snapshot
INITIATION OF DNA REPLICATION IN EUKARYOTIC CELLS
inferredcites →https://doi.org/10.1158/0008-5472.can-07-1307openalex-snapshot
Activation of Holliday Junction–Recognizing Protein Involved in the Chromosomal Stability and Immortality of Cancer Cells
inferredcites →https://doi.org/10.1186/gb-2009-10-3-r25openalex-snapshot
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
inferredcites →https://doi.org/10.1186/s12915-015-0177-6openalex-snapshot
Genome-wide replication landscape of Candida glabrata
inferredcites →https://doi.org/10.1242/jcs.113.11.1903openalex-snapshot
Centromere clustering is a major determinant of yeast interphase nuclear organization
inferredcites →https://doi.org/10.12688/f1000research.7334.1openalex-snapshot
HiCUP: pipeline for mapping and processing Hi-C data
inferredcites →https://doi.org/10.1371/journal.pbio.0020259openalex-snapshot
Genome-Wide Mapping of the Cohesin Complex in the Yeast Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1371/journal.pbio.1001460openalex-snapshot
The Cell Cycle Timing of Centromeric Chromatin Assembly in Drosophila Meiosis Is Distinct from Mitosis Yet Requires CAL1 and CENP-C
inferredcites →https://doi.org/10.1371/journal.pcbi.1005658openalex-snapshot
Spatial organization of the budding yeast genome in the cell nucleus and identification of specific chromatin interactions from multi-chromosome constrained chromatin model
inferredcites →https://doi.org/10.1371/journal.pcbi.1006090openalex-snapshot
DIVERSITY in binding, regulation, and evolution revealed from high-throughput ChIP
inferredcites →https://doi.org/10.1371/journal.pgen.1001068openalex-snapshot
Epigenetically-Inherited Centromere and Neocentromere DNA Replicates Earliest in S-Phase
inferredcites →https://doi.org/10.1371/journal.pgen.1002661openalex-snapshot
A Coordinated Interdependent Protein Circuitry Stabilizes the Kinetochore Ensemble to Protect CENP-A in the Human Pathogenic Yeast Candida albicans
inferredcites →https://doi.org/10.1371/journal.pgen.1002677openalex-snapshot
Functional Centromeres Determine the Activation Time of Pericentric Origins of DNA Replication in Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1371/journal.pgen.1004169openalex-snapshot
GC-Rich DNA Elements Enable Replication Origin Activity in the Methylotrophic Yeast Pichia pastoris
inferredcites →https://doi.org/10.1371/journal.pgen.1004344openalex-snapshot
Rad51–Rad52 Mediated Maintenance of Centromeric Chromatin in Candida albicans
inferredcites →https://doi.org/10.1371/journal.pgen.1006317openalex-snapshot
Neocentromeres Provide Chromosome Segregation Accuracy and Centromere Clustering to Multiple Loci along a Candida albicans Chromosome
inferredcites →https://doi.org/10.1371/journal.pone.0119672openalex-snapshot
Comparative 3D Genome Structure Analysis of the Fission and the Budding Yeast
inferredcites →https://doi.org/10.15252/embj.201797342openalex-snapshot
Cohesins and condensins orchestrate the 4D dynamics of yeast chromosomes during the cell cycle
inferredcites →https://doi.org/10.1534/genetics.119.302179openalex-snapshot
Cis - and Trans -chromosomal Interactions Define Pericentric Boundaries in the Absence of Conventional Heterochromatin
inferredcites →https://doi.org/10.4161/cc.6.20.4793openalex-snapshot
Domain Architectures of the Scm3p Protein Provide Insights into Centromere Function and Evolution
inferredcites →https://doi.org/10.4161/nucl.2.2.15211openalex-snapshot
H3.3 is deposited at centromeres in S phase as a placeholder for newly assembled CENP-A in G 1 phase
inferredcites →https://doi.org/10.7554/elife.48562openalex-snapshot
A new class of disordered elements controls DNA replication through initiator self-assembly

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1038/s41467-022-31980-3openalex-snapshot
A phylogenetically-restricted essential cell cycle progression factor in the human pathogen Candida albicans
inferred← citeshttps://doi.org/10.1101/2020.02.07.938175openalex-snapshot
Spatial inter-centromeric interactions facilitated the emergence of evolutionary new centromeres
inferred← citeshttps://doi.org/10.1101/2020.10.26.354522openalex-snapshot
A universal framework for detecting cis-regulatory diversity in DNA regulatory regions
inferred← citeshttps://doi.org/10.1101/475574openalex-snapshot
Cellular Dynamics and Genomic Identity of Centromeres in the Cereal Blast Fungus
inferred← citeshttps://doi.org/10.1128/mbio.01581-19openalex-snapshot
Cellular Dynamics and Genomic Identity of Centromeres in Cereal Blast Fungus
inferred← citeshttps://doi.org/10.1146/annurev-micro-011720-122512openalex-snapshot
Implications of the Evolutionary Trajectory of Centromeres in the Fungal Kingdom
inferred← citeshttps://doi.org/10.3410/f.738043801.793576418openalex-snapshot
Faculty Opinions recommendation of Spatial inter-centromeric interactions facilitated the emergence of evolutionary new centromeres.
inferred← citeshttps://doi.org/10.7554/elife.58556openalex-snapshot
Spatial inter-centromeric interactions facilitated the emergence of evolutionary new centromeres
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