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Identification and in silico analysis of the origin recognition complex in the human fungal pathogen Candida albicans

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/(sici)1521-1878(199901)21:1<5::aid-bies2>3.0.co;2-6openalex-snapshot

Replication origins in metazoan chromosomes: fact or fiction?

inferredcites →https://doi.org/10.1002/j.1460-2075.1982.tb01276.xopenalex-snapshot

Distantly related sequences in the alpha‐ and beta‐subunits of ATP synthase, myosin, kinases and other ATP‐requiring enzymes and a common nucleotide binding fold.

inferredcites →https://doi.org/10.1002/prot.10082openalex-snapshot

Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles

inferredcites →https://doi.org/10.1002/prot.21688openalex-snapshot

Exploring the extremes of sequence/structure space with ensemble fold recognition in the program Phyre

inferredcites →https://doi.org/10.1007/bf00261723openalex-snapshot

Isolation and nucleotide sequence of an autonomously replicating sequence (ARS) element functional in Candida albicans and Saccharomyces cerevisiae

inferredcites →https://doi.org/10.1016/0022-5193(65)90083-4openalex-snapshot

Molecules as documents of evolutionary history

inferredcites →https://doi.org/10.1016/j.ccell.2015.10.002openalex-snapshot

Targeting the AAA ATPase p97 as an Approach to Treat Cancer through Disruption of Protein Homeostasis

inferredcites →https://doi.org/10.1016/j.gene.2012.04.066openalex-snapshot

Mutations in central carbon metabolism genes suppress defects in nucleoid position and cell division of replication mutants in Escherichia coli

inferredcites →https://doi.org/10.1016/j.jsb.2003.10.010openalex-snapshot

Evolutionary history and higher order classification of AAA+ ATPases

inferredcites →https://doi.org/10.1016/j.mehy.2014.11.016openalex-snapshot

Enzymes of the central carbon metabolism: Are they linkers between transcription, DNA replication, and carcinogenesis?

inferredcites →https://doi.org/10.1016/j.molcel.2004.11.038openalex-snapshot

ATP Hydrolysis by ORC Catalyzes Reiterative Mcm2-7 Assembly at a Defined Origin of Replication

inferredcites →https://doi.org/10.1016/j.sbi.2008.12.010openalex-snapshot

ORC proteins: marking the start

inferredcites →https://doi.org/10.1016/s0014-5793(99)00132-5openalex-snapshot

The BAH (bromo‐adjacent homology) domain: a link between DNA methylation, replication and transcriptional regulation

inferredcites →https://doi.org/10.1016/s0021-9258(19)38926-4openalex-snapshot

The A.T-DNA-binding domain of mammalian high mobility group I chromosomal proteins. A novel peptide motif for recognizing DNA structure.

inferredcites →https://doi.org/10.1016/s0022-2836(05)80134-2openalex-snapshot

SCOP: A structural classification of proteins database for the investigation of sequences and structures

inferredcites →https://doi.org/10.1016/s0092-8674(00)81889-9openalex-snapshot

Coordinate Binding of ATP and Origin DNA Regulates the ATPase Activity of the Origin Recognition Complex

inferredcites →https://doi.org/10.1016/s1097-2765(00)80204-xopenalex-snapshot

Heterochromatin Dynamics in Mouse Cells

inferredcites →https://doi.org/10.1021/ci960402jopenalex-snapshot

GraphPad Prism, Data Analysis, and Scientific Graphing

inferredcites →https://doi.org/10.1038/35044083openalex-snapshot

MOD-1 is a serotonin-gated chloride channel that modulates locomotory behaviour in C. elegans

inferredcites →https://doi.org/10.1038/357128a0openalex-snapshot

ATP-dependent recognition of eukaryotic origins of DNA replication by a multiprotein complex

inferredcites →https://doi.org/10.1038/80734openalex-snapshot

The Protein Data Bank and the challenge of structural genomics.

inferredcites →https://doi.org/10.1038/emboj.2011.394openalex-snapshot

Multiple Cdt1 molecules act at each origin to load replication‐competent Mcm2–7 helicases

inferredcites →https://doi.org/10.1038/nature10956openalex-snapshot

The BAH domain of ORC1 links H4K20me2 to DNA replication licensing and Meier–Gorlin syndrome

inferredcites →https://doi.org/10.1038/ng.775openalex-snapshot

Mutations in the pre-replication complex cause Meier-Gorlin syndrome

inferredcites →https://doi.org/10.1038/ng.776openalex-snapshot

Mutations in ORC1, encoding the largest subunit of the origin recognition complex, cause microcephalic primordial dwarfism resembling Meier-Gorlin syndrome

inferredcites →https://doi.org/10.1038/ng.777openalex-snapshot

Mutations in origin recognition complex gene ORC4 cause Meier-Gorlin syndrome

inferredcites →https://doi.org/10.1038/nsmb1002openalex-snapshot

ATPase-dependent cooperative binding of ORC and Cdc6 to origin DNA

inferredcites →https://doi.org/10.1038/nsmb1121openalex-snapshot

Nucleotide-dependent conformational changes in the DnaA-like core of the origin recognition complex

inferredcites →https://doi.org/10.1038/onc.2014.320openalex-snapshot

How do glycolytic enzymes favour cancer cell proliferation by nonmetabolic functions?

inferredcites →https://doi.org/10.1038/srep14929openalex-snapshot

Specific binding of eukaryotic ORC to DNA replication origins depends on highly conserved basic residues

inferredcites →https://doi.org/10.1042/bsr20130036openalex-snapshot

The origin recognition complex in human diseases

inferredcites →https://doi.org/10.1073/pnas.1009945107openalex-snapshot

Human origin recognition complex is essential for HP1 binding to chromatin and heterochromatin organization

inferredcites →https://doi.org/10.1073/pnas.1013676108openalex-snapshot

Structural analysis of human Orc6 protein reveals a homology with transcription factor TFIIB

inferredcites →https://doi.org/10.1073/pnas.1213199109openalex-snapshot

Estimating divergence times in large molecular phylogenies

inferredcites →https://doi.org/10.1073/pnas.211342798openalex-snapshot

Functional analysis of mutant and wild-type Drosophila origin recognition complex

inferredcites →https://doi.org/10.1073/pnas.95.11.5857openalex-snapshot

SMART, a simple modular architecture research tool: Identification of signaling domains

inferredcites →https://doi.org/10.1073/pnas.96.6.2656openalex-snapshot

The fission yeast homologue of Orc4p binds to replication origin DNA via multiple AT-hooks

inferredcites →https://doi.org/10.1074/jbc.m111.240143openalex-snapshot

The Cdc45·Mcm2–7·GINS Protein Complex in Trypanosomes Regulates DNA Replication and Interacts with Two Orc1-like Proteins in the Origin Recognition Complex

inferredcites →https://doi.org/10.1074/jbc.m113.536110openalex-snapshot

The Drug Diazaborine Blocks Ribosome Biogenesis by Inhibiting the AAA-ATPase Drg1

inferredcites →https://doi.org/10.1080/10409230802058296openalex-snapshot

AAA+ ATPases in the Initiation of DNA Replication

inferredcites →https://doi.org/10.1093/bioinformatics/10.2.189openalex-snapshot

MEGA: Molecular Evolutionary Genetics Analysis software for microcomputers

inferredcites →https://doi.org/10.1093/bioinformatics/16.4.404openalex-snapshot

The PSIPRED protein structure prediction server

inferredcites →https://doi.org/10.1093/bioinformatics/8.3.275openalex-snapshot

The rapid generation of mutation data matrices from protein sequences

inferredcites →https://doi.org/10.1093/molbev/msm092openalex-snapshot

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

inferredcites →https://doi.org/10.1093/molbev/mst197openalex-snapshot

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

inferredcites →https://doi.org/10.1093/nar/22.22.4673openalex-snapshot

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

inferredcites →https://doi.org/10.1093/nar/25.17.3389openalex-snapshot

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

inferredcites →https://doi.org/10.1093/nar/26.19.4413openalex-snapshot

AT-hook motifs identified in a wide variety of DNA-binding proteins

inferredcites →https://doi.org/10.1093/nar/gkn238openalex-snapshot

The Jpred 3 secondary structure prediction server

inferredcites →https://doi.org/10.1093/nar/gkr931openalex-snapshot

SMART 7: recent updates to the protein domain annotation resource

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040454openalex-snapshot

The neighbor-joining method: a new method for reconstructing phylogenetic trees.

inferredcites →https://doi.org/10.1101/033142openalex-snapshot

Sequenceserver: a modern graphical user interface for custom BLAST databases

inferredcites →https://doi.org/10.1101/gad.1596807openalex-snapshot

Orc6 is required for dynamic recruitment of Cdt1 during repeated Mcm2–7 loading

inferredcites →https://doi.org/10.1101/gad.2011511openalex-snapshot

CDK prevents Mcm2–7 helicase loading by inhibiting Cdt1 interaction with Orc6

inferredcites →https://doi.org/10.1101/gad.969602openalex-snapshot

The origin recognition complex: from simple origins to complex functions

inferredcites →https://doi.org/10.1101/sqb.1974.038.01.024openalex-snapshot

The Units of DNA Replication in Drosophila melanogaster Chromosomes

inferredcites →https://doi.org/10.1111/gtc.12073openalex-snapshot

Concerted interaction between origin recognition complex ( ORC ), nucleosomes and replication origin DNA ensures stable ORC –origin binding

inferredcites →https://doi.org/10.1111/j.1365-2958.2006.05367.xopenalex-snapshot

The role of nutrient regulation and the Gpa2 protein in the mating pheromone response of C. albicans

inferredcites →https://doi.org/10.1111/j.1567-1364.2007.00299.xopenalex-snapshot

Interaction between ORC and Cdt1p ofSaccharomyces cerevisiae

inferredcites →https://doi.org/10.1126/science.1061724openalex-snapshot

Making Sense of Eukaryotic DNA Replication Origins

inferredcites →https://doi.org/10.1128/iai.69.1.108-114.2001openalex-snapshot

Single-Copy IMH3 Allele Is Sufficient To Confer Resistance to Mycophenolic Acid in Candida albicans and To Mediate Transformation of Clinical Candida Species

inferredcites →https://doi.org/10.1128/mbio.01703-14openalex-snapshot

Origin Replication Complex Binding, Nucleosome Depletion Patterns, and a Primary Sequence Motif Can Predict Origins of Replication in a Genome with Epigenetic Centromeres

inferredcites →https://doi.org/10.1128/mcb.17.12.7159openalex-snapshot

Architecture of the Yeast Origin Recognition Complex Bound to Origins of DNA Replication

inferredcites →https://doi.org/10.1128/mcb.2.7.853openalex-snapshot

DNA content, kinetic complexity, and the ploidy question in Candida albicans.

inferredcites →https://doi.org/10.1128/mcb.22.1.105-116.2002openalex-snapshot

Mammalian Orc1 Protein Is Selectively Released from Chromatin and Ubiquitinated during the S-to-M Transition in the Cell Division Cycle

inferredcites →https://doi.org/10.1139/o09-154openalex-snapshot

DnaA, ORC, and Cdc6: similarity beyond the domains of life and diversityThis paper is one of a selection of papers published in this special issue entitled 8th International Conference on AAA Proteins and has undergone the Journal's usual peer review process.

inferredcites →https://doi.org/10.1146/annurev.biochem.71.110601.135425openalex-snapshot

DNA Replication in Eukaryotic Cells

inferredcites →https://doi.org/10.1186/1471-2105-9-40openalex-snapshot

I-TASSER server for protein 3D structure prediction

inferredcites →https://doi.org/10.1186/1475-2859-10-19openalex-snapshot

Genetic response to metabolic fluctuations: correlation between central carbon metabolism and DNA replication in Escherichia coli

inferredcites →https://doi.org/10.1186/1752-0509-4-43openalex-snapshot

Low-complexity regions within protein sequences have position-dependent roles

inferredcites →https://doi.org/10.1186/gb-2009-10-3-214openalex-snapshot

The origin recognition complex protein family

inferredcites →https://doi.org/10.1371/journal.pbio.1000134openalex-snapshot

Evolution of Phosphoregulation: Comparison of Phosphorylation Patterns across Yeast Species

inferredcites →https://doi.org/10.1371/journal.pgen.1000755openalex-snapshot

The Origin Recognition Complex Interacts with a Subset of Metabolic Genes Tightly Linked to Origins of Replication

inferredcites →https://doi.org/10.1371/journal.pgen.1004344openalex-snapshot

Rad51–Rad52 Mediated Maintenance of Centromeric Chromatin in Candida albicans

inferredcites →https://doi.org/10.1371/journal.pone.0000447openalex-snapshot

Genetic Evidence for a Link Between Glycolysis and DNA Replication

inferredcites →https://doi.org/10.1534/g3.116.034744openalex-snapshot

Reconstructing the Backbone of the Saccharomycotina Yeast Phylogeny Using Genome-Scale Data

inferredcites →https://doi.org/10.2741/2000openalex-snapshot

Epstein-Barr virus (EBV) and its associated human cancers - Genetics, epigenetics, pathobiology and novel therapeutics

inferredcites →https://doi.org/10.3389/fmicb.2016.02173openalex-snapshot

Azole Antifungal Resistance in Candida albicans and Emerging Non-albicans Candida Species

inferredcites →https://doi.org/10.3410/m3-14openalex-snapshot

Emerging fungal infections in immunocompromised patients

inferredcites →https://doi.org/10.4061/2011/518258openalex-snapshot

Trypanosome Prereplication Machinery: A Potential New Target for an Old Problem

inferredcites →https://doi.org/10.5402/2012/538694openalex-snapshot

Candida albicans: A Model Organism for Studying Fungal Pathogens

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1101/465880openalex-snapshot

Orc4 spatiotemporally stabilizes centromeric chromatin

inferred← citeshttps://doi.org/10.1101/gr.265900.120openalex-snapshot

Orc4 spatiotemporally stabilizes centromeric chromatin

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