On the public citation graph

Linking Branch Lengths Across Loci Provides the Best Fit for Phylogenetic Inference

https://doi.org/10.1101/467449
0 signed · 53 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/s13127-010-0034-yopenalex-snapshot
Females do count: Documenting Chironomidae (Diptera) species diversity using DNA barcoding
inferredcites →https://doi.org/10.1016/0169-5347(96)10041-0openalex-snapshot
Among-site rate variation and its impact on phylogenetic analyses
inferredcites →https://doi.org/10.1016/j.meegid.2011.02.004openalex-snapshot
Phylogenetic analyses of mitochondrial and nuclear data in haematophagous flies support the paraphyly of the genus Stomoxys (Diptera: Muscidae)
inferredcites →https://doi.org/10.1016/j.tig.2005.04.001openalex-snapshot
Should phylogenetic models be trying to ‘fit an elephant’?
inferredcites →https://doi.org/10.1016/j.tree.2014.07.004openalex-snapshot
The changing face of the molecular evolutionary clock
inferredcites →https://doi.org/10.1016/j.ympev.2014.04.010openalex-snapshot
Using multiple relaxed-clock models to estimate evolutionary timescales from DNA sequence data
inferredcites →https://doi.org/10.1016/s1055-7903(03)00111-8openalex-snapshot
Molecular systematics of armadillos (Xenarthra, Dasypodidae): contribution of maximum likelihood and Bayesian analyses of mitochondrial and nuclear genes
inferredcites →https://doi.org/10.1038/nature15697openalex-snapshot
A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing
inferredcites →https://doi.org/10.1038/nature19417openalex-snapshot
A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing
inferredcites →https://doi.org/10.1038/nmeth.4285openalex-snapshot
ModelFinder: fast model selection for accurate phylogenetic estimates
inferredcites →https://doi.org/10.1038/nrg1020openalex-snapshot
The modern molecular clock
inferredcites →https://doi.org/10.1080/106351501753462821openalex-snapshot
Phylogeny of Saxifragales (Angiosperms, Eudicots): Analysis of a Rapid, Ancient Radiation
inferredcites →https://doi.org/10.1080/10635150490264699openalex-snapshot
Bayesian Phylogenetic Analysis of Combined Data
inferredcites →https://doi.org/10.1080/10635150490423520openalex-snapshot
The Importance of Proper Model Assumption in Bayesian Phylogenetics
inferredcites →https://doi.org/10.1080/10635150500354647openalex-snapshot
Under-parameterized Model of Sequence Evolution Leads to Bias in the Estimation of Diversification Rates from Molecular Phylogenies
inferredcites →https://doi.org/10.1080/10635150590946808openalex-snapshot
Partitioned Bayesian Analyses, Partition Choice, and the Phylogenetic Relationships of Scincid Lizards
inferredcites →https://doi.org/10.1080/10635150601087641openalex-snapshot
Accurate Branch Length Estimation in Partitioned Bayesian Analyses Requires Accommodation of Among-Partition Rate Variation and Attention to Branch Length Priors
inferredcites →https://doi.org/10.1080/10635150601146041openalex-snapshot
Inconsistency of Phylogenetic Estimates from Concatenated Data under Coalescence
inferredcites →https://doi.org/10.1093/bioinformatics/btq706openalex-snapshot
phangorn: phylogenetic analysis in R
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/bioinformatics/btv121openalex-snapshot
Mammalian genome evolution is governed by multiple pacemakers
inferredcites →https://doi.org/10.1093/gbe/evu091openalex-snapshot
Universal Pacemaker of Genome Evolution in Animals and Fungi and Variation of Evolutionary Rates in Diverse Organisms
inferredcites →https://doi.org/10.1093/gbe/evx198openalex-snapshot
Strategies for Partitioning Clock Models in Phylogenomic Dating: Application to the Angiosperm Evolutionary Timescale
inferredcites →https://doi.org/10.1093/genetics/116.1.169openalex-snapshot
On the Overdispersed Molecular Clock
inferredcites →https://doi.org/10.1093/genetics/146.1.393openalex-snapshot
Comparing Patterns of Nucleotide Substitution Rates Among Chloroplast Loci Using the Relative Ratio Test
inferredcites →https://doi.org/10.1093/genetics/154.3.1403openalex-snapshot
Understanding the Overdispersed Molecular Clock
inferredcites →https://doi.org/10.1093/molbev/msn112openalex-snapshot
Overdispersion of the Molecular Clock: Temporal Variation of Gene-Specific Substitution Rates in Drosophila
inferredcites →https://doi.org/10.1093/molbev/mss020openalex-snapshot
PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses
inferredcites →https://doi.org/10.1093/molbev/msu300openalex-snapshot
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
inferredcites →https://doi.org/10.1093/molbev/msv026openalex-snapshot
The Effects of Partitioning on Phylogenetic Inference
inferredcites →https://doi.org/10.1093/sysbio/42.2.126openalex-snapshot
Distributions of Tree Comparison Metrics--Some New Results
inferredcites →https://doi.org/10.1093/sysbio/syq010openalex-snapshot
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
inferredcites →https://doi.org/10.1093/sysbio/syr116openalex-snapshot
Testing the Impact of Calibration on Molecular Divergence Times Using a Fossil-Rich Group: The Case of Nothofagus (Fagales)
inferredcites →https://doi.org/10.1093/sysbio/syt029openalex-snapshot
Bayesian Tests of Topology Hypotheses with an Example from Diving Beetles
inferredcites →https://doi.org/10.1093/sysbio/syu063openalex-snapshot
Evaluating Summary Methods for Multilocus Species Tree Estimation in the Presence of Incomplete Lineage Sorting
inferredcites →https://doi.org/10.1093/sysbio/syu109openalex-snapshot
Characterization of the Uncertainty of Divergence Time Estimation under Relaxed Molecular Clock Models Using Multiple Loci
inferredcites →https://doi.org/10.1093/sysbio/syw018openalex-snapshot
Gene Tree Discordance Causes Apparent Substitution Rate Variation
inferredcites →https://doi.org/10.1093/sysbio/syx061openalex-snapshot
An Evaluation of Different Partitioning Strategies for Bayesian Estimation of Species Divergence Times
inferredcites →https://doi.org/10.1093/sysbio/syx076openalex-snapshot
Analysis of Phylogenomic Tree Space Resolves Relationships Among Marsupial Families
inferredcites →https://doi.org/10.1111/1755-0998.12320openalex-snapshot
Simulating and detecting autocorrelation of molecular evolutionary rates among lineages
inferredcites →https://doi.org/10.1111/j.1558-5646.1985.tb00398.xopenalex-snapshot
FACTORS DETERMINING THE ACCURACY OF CLADOGRAM ESTIMATION: EVALUATION USING COMPUTER SIMULATION
inferredcites →https://doi.org/10.1111/mec.12196openalex-snapshot
Montane refugia predict population genetic structure in the L arge‐blotched E nsatina salamander
inferredcites →https://doi.org/10.1111/mec.12953openalex-snapshot
Molecular‐clock methods for estimating evolutionary rates and timescales
inferredcites →https://doi.org/10.1111/zsc.12007openalex-snapshot
Multilocus phylogeny reveals unexpected diversification patterns in A sian wolf snakes (genus L ycodon)
inferredcites →https://doi.org/10.1146/annurev-ecolsys-102710-145119openalex-snapshot
The Patterns and Causes of Variation in Plant Nucleotide Substitution Rates
inferredcites →https://doi.org/10.1146/annurev.ecolsys.36.102003.152633openalex-snapshot
Model Selection in Phylogenetics
inferredcites →https://doi.org/10.1371/journal.pcbi.1002785openalex-snapshot
Universal Pacemaker of Genome Evolution
inferredcites →https://doi.org/10.3109/19401736.2010.494727openalex-snapshot
Improved characterisation of among-lineage rate variation in cetacean mitogenomes using codon-partitioned relaxed clocks
inferredcites →https://doi.org/10.5860/choice.30-2064openalex-snapshot
The causes of molecular evolution

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/tax.12288openalex-snapshot
A prickly puzzle: Generic delimitations in the Carduus‐Cirsium group (Compositae: Cardueae: Carduinae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2022.107550openalex-snapshot
Categorical edge-based analyses of phylogenomic data reveal conflicting signals for difficult relationships in the avian tree
inferred← citeshttps://doi.org/10.1101/2020.04.20.049999openalex-snapshot
Disentangling biological and analytical factors that give rise to outlier genes in phylogenomic matrices
inferred← citeshttps://doi.org/10.1101/810309openalex-snapshot
Empirical Analysis of Phylogenetic Quasi-Terraces
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.