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Comparative genomic analysis of the emerging pathogen Streptococcus pseudopneumoniae : novel insights into virulence determinants and identification of a novel species-specific molecular marker

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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The mystery of the fourth clone: comparative genomic analysis of four non-typeable Streptococcus pneumoniae strains with different susceptibilities to optochin

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Aetiology of lower respiratory tract infection in adults in primary care: a prospective study in 11 European countries

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lytA-based identification methods can misidentify Streptococcus pneumoniae

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Characterization of Streptococcus thermophilus two-component systems: In silico analysis, functional analysis and expression of response regulator genes in pure or mixed culture with its yogurt partner, Lactobacillus delbrueckii subsp. bulgaricus

inferredcites →https://doi.org/10.1016/s0378-1119(01)00896-4openalex-snapshot

Allelic variation in the highly polymorphic locus pspC of Streptococcus pneumoniae

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Dense genomic sampling identifies highways of pneumococcal recombination

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The role of Streptococcus pneumoniae virulence factors in host respiratory colonization and disease

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Penicillin tolerance genes ofStreptococcus pneumoniae: the ABC‐type manganese permease complex Psa

inferredcites →https://doi.org/10.1073/pnas.1617849114openalex-snapshot

Evolution of antibiotic resistance is linked to any genetic mechanism affecting bacterial duration of carriage

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THE USE OF PRECIPITIN ANALYSIS IN AGAR FOR THE STUDY OF HUMAN STREPTOCOCCAL INFECTIONS

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Structure and Dissemination of a Chromosomal Insertion Element Encoding Macrolide Efflux inStreptococcus pneumoniae

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SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

inferredcites →https://doi.org/10.1093/bioinformatics/8.3.275openalex-snapshot

The rapid generation of mutation data matrices from protein sequences

inferredcites →https://doi.org/10.1093/bioinformatics/btr039openalex-snapshot

Easyfig: a genome comparison visualizer

inferredcites →https://doi.org/10.1093/bioinformatics/btt086openalex-snapshot

QUAST: quality assessment tool for genome assemblies

inferredcites →https://doi.org/10.1093/bioinformatics/btu153openalex-snapshot

Prokka: rapid prokaryotic genome annotation

inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot

Trimmomatic: a flexible trimmer for Illumina sequence data

inferredcites →https://doi.org/10.1093/bioinformatics/btv271openalex-snapshot

kSNP3.0: SNP detection and phylogenetic analysis of genomes without genome alignment or reference genome

inferredcites →https://doi.org/10.1093/jac/dks261openalex-snapshot

Identification of acquired antimicrobial resistance genes

inferredcites →https://doi.org/10.1093/molbev/msw054openalex-snapshot

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

inferredcites →https://doi.org/10.1093/nar/gkw1129openalex-snapshot

CDD/SPARCLE: functional classification of proteins via subfamily domain architectures

inferredcites →https://doi.org/10.1093/nar/gkx922openalex-snapshot

20 years of the SMART protein domain annotation resource

inferredcites →https://doi.org/10.1093/nar/gkx977openalex-snapshot

panX: pan-genome analysis and exploration

inferredcites →https://doi.org/10.1099/ijsem.0.001433openalex-snapshot

Re-evaluation of the taxonomy of the Mitis group of the genus Streptococcus based on whole genome phylogenetic analyses, and proposed reclassification of Streptococcus dentisani as Streptococcus oralis subsp. dentisani comb. nov., Streptococcus tigurinus as Streptococcus oralis subsp. tigurinus…

inferredcites →https://doi.org/10.1099/mgen.0.000175openalex-snapshot

Use of genomics to design a diagnostic assay to discriminate between Streptococcus pneumoniae and Streptococcus pseudopneumoniae

inferredcites →https://doi.org/10.1099/mic.0.035345-0openalex-snapshot

Phenotypic and genomic characterization of pneumococcus-like streptococci isolated from HIV-seropositive patients

inferredcites →https://doi.org/10.1099/mic.0.28610-0openalex-snapshot

Versatility of pneumococcal surface proteins

inferredcites →https://doi.org/10.1111/j.1469-0691.2010.03183.xopenalex-snapshot

Streptococcus pneumoniae: virulence factors and variation

inferredcites →https://doi.org/10.1111/j.1469-0691.2011.03672.xopenalex-snapshot

Guidelines for the management of adult lower respiratory tract infections - Full version

inferredcites →https://doi.org/10.1111/j.1574-6968.2010.02002.xopenalex-snapshot

Nucleotide sequence and functional analysis of the tet (M)-carrying conjugative transposon Tn5251 of Streptococcus pneumoniae

inferredcites →https://doi.org/10.1126/science.1198545openalex-snapshot

Rapid Pneumococcal Evolution in Response to Clinical Interventions

inferredcites →https://doi.org/10.1128/aac.01526-07openalex-snapshot

Antimicrobial Susceptibility Profile of Streptococcus pseudopneumoniae Isolated from Sputum

inferredcites →https://doi.org/10.1128/aac.06374-11openalex-snapshot

Clinical and Antimicrobial Susceptibility Data of 140 Streptococcus pseudopneumoniae Isolates in France

inferredcites →https://doi.org/10.1128/aac.42.9.2312openalex-snapshot

Detection of Tn 917 -Like Sequences within a Tn 916 -like Conjugative Transposon (Tn 3872 ) in Erythromycin-Resistant Isolates of Streptococcus pneumoniae

inferredcites →https://doi.org/10.1128/iai.00755-12openalex-snapshot

PspK of Streptococcus pneumoniae Increases Adherence to Epithelial Cells and Enhances Nasopharyngeal Colonization

inferredcites →https://doi.org/10.1128/iai.72.10.5582-5596.2004openalex-snapshot

Microarray Analysis of Pneumococcal Gene Expression during Invasive Disease

inferredcites →https://doi.org/10.1128/jb.01272-08openalex-snapshot

Comparative Genomic Analysis of Ten Streptococcus pneumoniae Temperate Bacteriophages

inferredcites →https://doi.org/10.1128/jb.02432-14openalex-snapshot

An Electrostatic Interaction between BlpC and BlpH Dictates Pheromone Specificity in the Control of Bacteriocin Production and Immunity in Streptococcus pneumoniae

inferredcites →https://doi.org/10.1128/jb.186.12.3721-3729.2004openalex-snapshot

A Homologue ofaliBIs Found in the Capsule Region of NonencapsulatedStreptococcus pneumoniae

inferredcites →https://doi.org/10.1128/jcm.00131-12openalex-snapshot

Streptococcus pseudopneumoniae Identification by Pherotype: a Method To Assist Understanding of a Potentially Emerging or Overlooked Pathogen

inferredcites →https://doi.org/10.1128/jcm.01313-09openalex-snapshot

Highly Penicillin-Resistant Multidrug-Resistant Pneumococcus-Like Strains Colonizing Children in Oeiras, Portugal: Genomic Characteristics and Implications for Surveillance

inferredcites →https://doi.org/10.1128/jcm.01746-09openalex-snapshot

Detection of Large Numbers of Pneumococcal Virulence Genes in Streptococci of the Mitis Group

inferredcites →https://doi.org/10.1128/jcm.02643-05openalex-snapshot

Incidence and Pathogenic Effect of Streptococcus pseudopneumoniae

inferredcites →https://doi.org/10.1128/jcm.06609-11openalex-snapshot

Evaluation of Several Biochemical and Molecular Techniques for Identification of Streptococcus pneumoniae and Streptococcus pseudopneumoniae and Their Detection in Respiratory Samples

inferredcites →https://doi.org/10.1128/jcm.42.10.4686-4696.2004openalex-snapshot

Accuracy of Phenotypic and Genotypic Testing for Identification of Streptococcus pneumoniae and Description of Streptococcus pseudopneumoniae sp. nov

inferredcites →https://doi.org/10.1128/jcm.44.3.923-927.2006openalex-snapshot

Characteristics of Streptococcus pseudopneumoniae Isolated from Purulent Sputum Samples

inferredcites →https://doi.org/10.1128/mbio.00035-12openalex-snapshot

Nontypeable Pneumococci Can Be Divided into Multiple cps Types, Including One Type Expressing the Novel Gene pspK

inferredcites →https://doi.org/10.1128/mbio.01792-15openalex-snapshot

Nonencapsulated Streptococcus pneumoniae: Emergence and Pathogenesis

inferredcites →https://doi.org/10.1186/gb-2010-11-10-r107openalex-snapshot

Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species

inferredcites →https://doi.org/10.1186/s12864-017-4376-0openalex-snapshot

The variome of pneumococcal virulence factors and regulators

inferredcites →https://doi.org/10.1371/journal.pgen.0020031openalex-snapshot

Genetic Analysis of the Capsular Biosynthetic Locus from All 90 Pneumococcal Serotypes

inferredcites →https://doi.org/10.1371/journal.pone.0057047openalex-snapshot

Disease Isolates of Streptococcus pseudopneumoniae and Non-Typeable S. pneumoniae Presumptively Identified as Atypical S. pneumoniae in Spain

inferredcites →https://doi.org/10.1371/journal.pone.0065670openalex-snapshot

Comparative Genomic Analyses of Streptococcus pseudopneumoniae Provide Insight into Virulence and Commensalism Dynamics

inferredcites →https://doi.org/10.1371/journal.pone.0151908openalex-snapshot

StreptoBase: An Oral Streptococcus mitis Group Genomic Resource and Analysis Platform

inferredcites →https://doi.org/10.1371/journal.ppat.1003201openalex-snapshot

The KdpD/KdpE Two-Component System: Integrating K+ Homeostasis and Virulence

inferredcites →https://doi.org/10.3109/23744235.2016.1157896openalex-snapshot

Septicemia with Streptococcus pseudopneumoniae: report of three cases with an apparent hepatic or bile duct association

inferredcites →https://doi.org/10.3389/fmicb.2015.00026openalex-snapshot

Composite mobile genetic elements disseminating macrolide resistance in Streptococcus pneumoniae

inferredcites →https://doi.org/10.3389/fmicb.2017.02074openalex-snapshot

Upregulation of the PatAB Transporter Confers Fluoroquinolone Resistance to Streptococcus pseudopneumoniae

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.ijfoodmicro.2020.109026openalex-snapshot

Mining of novel target genes through pan-genome analysis for multiplex PCR differentiation of the major Listeria monocytogenes serotypes

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