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Quantifying the mechanics and growth of cells and tissues in 3D using high resolution computational models

https://doi.org/10.1101/470559
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Matrix geometry determines optimal cancer cell migration strategy and modulates response to interventions
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A cell-based computational model of early embryogenesis coupling mechanical behaviour and gene regulation
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Decellularized human liver as a natural 3D-scaffold for liver bioengineering and transplantation
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Mechanisms of soft cellular tissue bruising. A particle based simulation approach
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Structure-sensitive elastography: on the viscoelastic powerlaw behavior of in vivo human tissue in health and disease
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The role of fluctuations and stress on the effective viscosity of cell aggregates
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Role of cortical tension in bleb growth
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Prediction and validation of cell alignment along microvessels as order principle to restore tissue architecture in liver regeneration
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Dynamical organization of the cytoskeletal cortex probed by micropipette aspiration
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Quantifying the biophysical characteristics of Plasmodium-falciparum -parasitized red blood cells in microcirculation
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Computational modeling of three-dimensional ECM-rigidity sensing to guide directed cell migration
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Adhesion induced buckling of spherical shells
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Modeling the impact of granular embedding media, and pulling versus pushing cells on growing cell clones
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Thermorheology of living cells—impact of temperature variations on cell mechanics
inferredcites →https://doi.org/10.1088/1367-2630/17/8/083049openalex-snapshot
Testing the differential adhesion hypothesis across the epithelial−mesenchymal transition
inferredcites →https://doi.org/10.1088/1367-2630/aa7658openalex-snapshot
Actin and microtubule networks contribute differently to cell response for small and large strains
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A single-cell-based model of tumor growth in vitro : monolayers and spheroids
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Modeling cell rheology with the Subcellular Element Model
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Multi-scale modelling of cancer cell intravasation: the role of cadherins in metastasis
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A computational study of discrete mechanical tissue models
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Stress distributions and cell flows in a growing cell aggregate
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Towards personalized computational oncology: from spatial models of tumour spheroids, to organoids, to tissues
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Multicellular tumor spheroid in an off-lattice Voronoi-Delaunay cell model
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Particle-based model to simulate the micromechanics of biological cells
inferredcites →https://doi.org/10.1103/physreve.87.012725openalex-snapshot
Vascular networks due to dynamically arrested crystalline ordering of elongated cells
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Simulation of biological cell sorting using a two-dimensional extended Potts model
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Optical Deformability of Soft Biological Dielectrics
inferredcites →https://doi.org/10.1103/physrevlett.94.028102openalex-snapshot
Johnson-Kendall-Roberts Theory Applied to Living Cells
inferredcites →https://doi.org/10.1103/revmodphys.85.1327openalex-snapshot
Physics of adherent cells
inferredcites →https://doi.org/10.1115/1.4025355openalex-snapshot
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inferredcites →https://doi.org/10.1126/science.2451290openalex-snapshot
Cell and Environment Interactions in Tumor Microregions: The Multicell Spheroid Model
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A HYBRID MODEL FOR TUMOR SPHEROID GROWTH IN VITRO I: THEORETICAL DEVELOPMENT AND EARLY RESULTS
inferredcites →https://doi.org/10.1146/annurev-cellbio-111315-125001openalex-snapshot
Chemical Principles in Tissue Clearing and Staining Protocols for Whole-Body Cell Profiling
inferredcites →https://doi.org/10.1364/oe.23.005221openalex-snapshot
The lensing effect of trapped particles in a dual-beam optical trap
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A Comprehensive Model of the Spatio-Temporal Stem Cell and Tissue Organisation in the Intestinal Crypt
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Dynamic Modeling of Cell Migration and Spreading Behaviors on Fibronectin Coated Planar Substrates and Micropatterned Geometries
inferredcites →https://doi.org/10.1371/journal.pcbi.1003267openalex-snapshot
Analysis of Initial Cell Spreading Using Mechanistic Contact Formulations for a Deformable Cell Model
inferredcites →https://doi.org/10.1371/journal.pcbi.1003774openalex-snapshot
Mechanical Cell-Matrix Feedback Explains Pairwise and Collective Endothelial Cell Behavior In Vitro
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Cell Invasion Dynamics into a Three Dimensional Extracellular Matrix Fibre Network
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Immersed Boundary Models for Quantifying Flow-Induced Mechanical Stimuli on Stem Cells Seeded on 3D Scaffolds in Perfusion Bioreactors
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A Sub-Cellular Viscoelastic Model for Cell Population Mechanics
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Modeling the Effect of Deregulated Proliferation and Apoptosis on the Growth Dynamics of Epithelial Cell Populations In Vitro
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Optical Deformability as an Inherent Cell Marker for Testing Malignant Transformation and Metastatic Competence

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s12195-020-00615-2openalex-snapshot
A Multiscale Model to Predict Neuronal Cell Deformation with Varying Extracellular Matrix Stiffness and Topography
inferred← citeshttps://doi.org/10.1038/s41598-020-78780-7openalex-snapshot
Impact of tumor-parenchyma biomechanics on liver metastatic progression: a multi-model approach
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Distribution and propagation of mechanical stress in simulated structurally heterogeneous tissue spheroids
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A quantitative high resolution computational cell model to unravel the mechanics in living tissues
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Coarse-grained modeling of cell division in 3D: influence of density, medium viscosity, and inter-membrane friction on cell growth and nearest neighbor distribution
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Jamming and force distribution in growing epithelial tissue
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The role of actin protrusion dynamics in cell migration through a degradable viscoelastic extracellular matrix: Insights from a computational model
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How Computation Is Helping Unravel the Dynamics of Morphogenesis
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