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Genomic analysis of dingoes identifies genomic regions under reversible selection during domestication and feralization

https://doi.org/10.1101/472084

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Conservation implications for dingoes from the maternal and paternal genome: Multiple populations, dog introgression, and demography

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Narrow genetic basis for the Australian dingo confirmed through analysis of paternal ancestry

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New insights on the history of canids in Oceania based on mitochondrial and nuclear data

inferredcites →https://doi.org/10.1007/s11692-016-9371-xopenalex-snapshot

Cranial Shape and the Modularity of Hybridization in Dingoes and Dogs; Hybridization Does Not Spell the End for Native Morphology

inferredcites →https://doi.org/10.1016/j.celrep.2017.03.079openalex-snapshot

Genomic Analyses Reveal the Influence of Geographic Origin, Migration, and Hybridization on Modern Dog Breed Development

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Activity-Dependent Synaptogenesis: Regulation by a CaM-Kinase Kinase/CaM-Kinase I/βPIX Signaling Complex

inferredcites →https://doi.org/10.1016/s0166-4328(01)00365-5openalex-snapshot

The hippocampus and declarative memory: cognitive mechanisms and neural codes

inferredcites →https://doi.org/10.1037//0033-2909.89.3.407openalex-snapshot

Captivity and feralization.

inferredcites →https://doi.org/10.1038/cr.2015.147openalex-snapshot

Out of southern East Asia: the natural history of domestic dogs across the world

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Diet adaptation in dog reflects spread of prehistoric agriculture

inferredcites →https://doi.org/10.1038/nature04338openalex-snapshot

Genome sequence, comparative analysis and haplotype structure of the domestic dog

inferredcites →https://doi.org/10.1038/nature06250openalex-snapshot

Genome-wide detection and characterization of positive selection in human populations

inferredcites →https://doi.org/10.1038/nature11837openalex-snapshot

The genomic signature of dog domestication reveals adaptation to a starch-rich diet

inferredcites →https://doi.org/10.1038/ncomms12950openalex-snapshot

Feralisation targets different genomic loci to domestication in the chicken

inferredcites →https://doi.org/10.1038/ncomms15323openalex-snapshot

Genomic variation associated with local adaptation of weedy rice during de-domestication

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Ancient European dog genomes reveal continuity since the Early Neolithic

inferredcites →https://doi.org/10.1038/ncomms2814openalex-snapshot

The genomics of selection in dogs and the parallel evolution between dogs and humans

inferredcites →https://doi.org/10.1038/ng.3748openalex-snapshot

Robust and scalable inference of population history from hundreds of unphased whole genomes

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A framework for variation discovery and genotyping using next-generation DNA sequencing data

inferredcites →https://doi.org/10.1038/ng.937openalex-snapshot

Bayesian inference of ancient human demography from individual genome sequences

inferredcites →https://doi.org/10.1038/nrg.2017.67openalex-snapshot

Demographic history, selection and functional diversity of the canine genome

inferredcites →https://doi.org/10.1071/9781486300303openalex-snapshot

The Dingo Debate

inferredcites →https://doi.org/10.1073/pnas.0401814101openalex-snapshot

A detailed picture of the origin of the Australian dingo, obtained from the study of mitochondrial DNA

inferredcites →https://doi.org/10.1073/pnas.1118892109openalex-snapshot

Genetic dating indicates that the Asian–Papuan admixture through Eastern Indonesia corresponds to the Austronesian expansion

inferredcites →https://doi.org/10.1073/pnas.1211927110openalex-snapshot

Genome-wide data substantiate Holocene gene flow from India to Australia

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A holistic picture of Austronesian migrations revealed by phylogeography of Pacific paper mulberry

inferredcites →https://doi.org/10.1074/jbc.m109.078980openalex-snapshot

Structural Basis for Substrate Selectivity in Human Maltase-Glucoamylase and Sucrase-Isomaltase N-terminal Domains

inferredcites →https://doi.org/10.1086/413673openalex-snapshot

Behavioral Aspects of Animal Domestication

inferredcites →https://doi.org/10.1086/659965openalex-snapshot

The Beginnings of Agriculture in China

inferredcites →https://doi.org/10.1093/acref/9780199206087.001.0001/acref-9780199206087openalex-snapshot

The Encyclopedia of Mammals

inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot

Fast and accurate short read alignment with Burrows–Wheeler transform

inferredcites →https://doi.org/10.1093/bioinformatics/btr330openalex-snapshot

The variant call format and VCFtools

inferredcites →https://doi.org/10.1093/molbev/msm092openalex-snapshot

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

inferredcites →https://doi.org/10.1093/molbev/msp195openalex-snapshot

mtDNA Data Indicate a Single Origin for Dogs South of Yangtze River, Less Than 16,300 Years Ago, from Numerous Wolves

inferredcites →https://doi.org/10.1093/molbev/mst027openalex-snapshot

Y Chromosome Analysis of Dingoes and Southeast Asian Village Dogs Suggests a Neolithic Continental Expansion from Southeast Asia Followed by Multiple Austronesian Dispersals

inferredcites →https://doi.org/10.1093/nar/gky1041openalex-snapshot

iDog: an integrated resource for domestic dogs and wild canids

inferredcites →https://doi.org/10.1093/nsr/nwy076openalex-snapshot

Structural variation during dog domestication: insights from gray wolf and dhole genomes

inferredcites →https://doi.org/10.1095/biolreprod.112.107086openalex-snapshot

Prss37 Is Required for Male Fertility in the Mouse1

inferredcites →https://doi.org/10.1098/rspb.2011.1395openalex-snapshot

Mitochondrial DNA data indicate an introduction through Mainland Southeast Asia for Australian dingoes and Polynesian domestic dogs

inferredcites →https://doi.org/10.1101/gr.171876.113openalex-snapshot

Whole-genome sequencing of six dog breeds from continuous altitudes reveals adaptation to high-altitude hypoxia

inferredcites →https://doi.org/10.1103/physrev.181.787openalex-snapshot

Energy Gaps in the Excitation Spectrum of a Superconductor

inferredcites →https://doi.org/10.1111/desc.12460openalex-snapshot

Exploring the evolutionary origins of overimitation: a comparison across domesticated and non‐domesticated canids

inferredcites →https://doi.org/10.1111/j.1469-185x.1984.tb00401.xopenalex-snapshot

FACTORS AFFECTING THE SECRETION OF LUTEINIZING HORMONE IN THE EWE

inferredcites →https://doi.org/10.1111/j.1558-5646.1984.tb05657.xopenalex-snapshot

ESTIMATING F -STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE

inferredcites →https://doi.org/10.1111/j.1752-4571.2010.00140.xopenalex-snapshot

Crops gone wild: evolution of weeds and invasives from domesticated ancestors

inferredcites →https://doi.org/10.1113/jp272962openalex-snapshot

Long‐chain acyl‐CoA synthetase 6 regulates lipid synthesis and mitochondrial oxidative capacity in human and rat skeletal muscle

inferredcites →https://doi.org/10.1126/science.1076980openalex-snapshot

Ancient DNA Evidence for Old World Origin of New World Dogs

inferredcites →https://doi.org/10.1126/science.1166605openalex-snapshot

The Domestication Process and Domestication Rate in Rice: Spikelet Bases from the Lower Yangtze

inferredcites →https://doi.org/10.1126/science.1243650openalex-snapshot

Complete Mitochondrial Genomes of Ancient Canids Suggest a European Origin of Domestic Dogs

inferredcites →https://doi.org/10.1126/science.276.5319.1687openalex-snapshot

Multiple and Ancient Origins of the Domestic Dog

inferredcites →https://doi.org/10.1163/9789004644472openalex-snapshot

Recent Advances in Indo-Pacific Prehistory

inferredcites →https://doi.org/10.1186/1471-2148-7-214openalex-snapshot

BEAST: Bayesian evolutionary analysis by sampling trees

inferredcites →https://doi.org/10.1186/1756-6606-2-38openalex-snapshot

The transcription factor RBP-J is essential for retinal cell differentiation and lamination

inferredcites →https://doi.org/10.1194/jlr.m024463openalex-snapshot

Peroxisomal L-bifunctional enzyme (Ehhadh) is essential for the production of medium-chain dicarboxylic acids

inferredcites →https://doi.org/10.1371/journal.pbio.0040072openalex-snapshot

A Map of Recent Positive Selection in the Human Genome

inferredcites →https://doi.org/10.1371/journal.pgen.0020190openalex-snapshot

Population Structure and Eigenanalysis

inferredcites →https://doi.org/10.1371/journal.pgen.1003984openalex-snapshot

Genetic Recombination Is Targeted towards Gene Promoter Regions in Dogs

inferredcites →https://doi.org/10.1371/journal.pgen.1004016openalex-snapshot

Genome Sequencing Highlights the Dynamic Early History of Dogs

inferredcites →https://doi.org/10.1371/journal.pgen.1004466openalex-snapshot

Hypoxia Adaptations in the Grey Wolf (Canis lupus chanco) from Qinghai-Tibet Plateau

inferredcites →https://doi.org/10.1515/9780824874681openalex-snapshot

Prehistory of the Indo-Malaysian Archipelago

inferredcites →https://doi.org/10.1523/jneurosci.0377-15.2015openalex-snapshot

The Chromatin Remodeling Protein Bptf Promotes Posterior Neuroectodermal Fate by Enhancing Smad2-Activated wnt8a Expression

inferredcites →https://doi.org/10.1523/jneurosci.19-06-02381.1999openalex-snapshot

Spatial- and Task-Dependent Neuronal Responses during Real and Virtual Translocation in the Monkey Hippocampal Formation

inferredcites →https://doi.org/10.1534/genetics.112.145037openalex-snapshot

Ancient Admixture in Human History

inferredcites →https://doi.org/10.22459/pima.03.2007openalex-snapshot

Prehistory of the Indo-Malaysian Archipelago

inferredcites →https://doi.org/10.5860/choice.33-2129openalex-snapshot

The dingo: in Australia and Asia

inferredcites →https://doi.org/10.5962/bhl.title.37659openalex-snapshot

The variation of animals and plants under domestication / by Charles Darwin ; authorized edition, with a preface by Asa Gray.

inferredcites →https://doi.org/10.5962/bhl.title.84435openalex-snapshot

The variation of animals and plants under domestication /

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s00435-019-00475-zopenalex-snapshot

Old dogs, new tricks: 3D geometric analysis of cranial morphology supports ancient population substructure in the Australian dingo

inferred← citeshttps://doi.org/10.1007/s10592-019-01230-zopenalex-snapshot

Geographic hot spots of dingo genetic ancestry in southeastern Australia despite hybridisation with domestic dogs

inferred← citeshttps://doi.org/10.1016/j.jaa.2020.101146openalex-snapshot

Hunting dogs down under? On the Aboriginal use of tame dingoes in dietary game acquisition and its relevance to Australian prehistory

inferred← citeshttps://doi.org/10.11646/zootaxa.4564.1.6openalex-snapshot

Taxonomic status of the Australian dingo: the case for Canis dingo Meyer, 1793

inferred← citeshttps://doi.org/10.7554/elife.48119openalex-snapshot

Evolution of Yin and Yang isoforms of a chromatin remodeling subunit precedes the creation of two genes

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