On the public citation graph

NucMerge: Genome assembly quality improvement assisted by alternative assemblies and paired-end Illumina reads

https://doi.org/10.1101/483701
0 signed · 30 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/j.ygeno.2010.03.001openalex-snapshot
Assembly algorithms for next-generation sequencing data
inferredcites →https://doi.org/10.1038/nbt.1754openalex-snapshot
Integrative genomics viewer
inferredcites →https://doi.org/10.1073/pnas.1017351108openalex-snapshot
High-quality draft assemblies of mammalian genomes from massively parallel sequence data
inferredcites →https://doi.org/10.1089/cmb.2012.0021openalex-snapshot
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
inferredcites →https://doi.org/10.1093/bib/bbs017openalex-snapshot
Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
inferredcites →https://doi.org/10.1093/bib/bbw096openalex-snapshot
The present and future ofde novowhole-genome assembly
inferredcites →https://doi.org/10.1093/bioinformatics/btm542openalex-snapshot
Assembly reconciliation
inferredcites →https://doi.org/10.1093/bioinformatics/btn548openalex-snapshot
Aggressive assembly of pyrosequencing reads with mates
inferredcites →https://doi.org/10.1093/bioinformatics/btr588openalex-snapshot
Graph accordance of next-generation sequence assemblies
inferredcites →https://doi.org/10.1093/bioinformatics/btt273openalex-snapshot
GAGE-B: an evaluation of genome assemblers for bacterial organisms
inferredcites →https://doi.org/10.1093/bioinformatics/btt476openalex-snapshot
The MaSuRCA genome assembler
inferredcites →https://doi.org/10.1101/gr.074492.107openalex-snapshot
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
inferredcites →https://doi.org/10.1101/gr.089532.108openalex-snapshot
ABySS: A parallel assembler for short read sequence data
inferredcites →https://doi.org/10.1101/gr.091777.109openalex-snapshot
Genome structure of a Saccharomyces cerevisiae strain widely used in bioethanol production
inferredcites →https://doi.org/10.1101/gr.126599.111openalex-snapshot
Assemblathon 1: A competitive assessment of de novo short read assembly methods
inferredcites →https://doi.org/10.1101/gr.126953.111openalex-snapshot
Efficient de novo assembly of large genomes using compressed data structures
inferredcites →https://doi.org/10.1101/gr.131383.111openalex-snapshot
GAGE: A critical evaluation of genome assemblies and assembly algorithms
inferredcites →https://doi.org/10.1186/1471-2105-14-s15-s16openalex-snapshot
Finishing bacterial genome assemblies with Mix
inferredcites →https://doi.org/10.1186/1471-2105-14-s7-s6openalex-snapshot
GAM-NGS: genomic assemblies merger for next generation sequencing
inferredcites →https://doi.org/10.1186/2047-217x-1-18openalex-snapshot
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
inferredcites →https://doi.org/10.1186/2047-217x-2-10openalex-snapshot
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
inferredcites →https://doi.org/10.1186/gb-2004-5-2-r12openalex-snapshot
Versatile and open software for comparing large genomes
inferredcites →https://doi.org/10.1186/s12859-017-1748-zopenalex-snapshot
NucDiff: in-depth characterization and annotation of differences between two sets of DNA sequences
inferredcites →https://doi.org/10.1186/s12859-020-3414-0openalex-snapshot
NucBreak: location of structural errors in a genome assembly by using paired-end Illumina reads
inferredcites →https://doi.org/10.1186/s13059-015-0764-4openalex-snapshot
Metassembler: merging and optimizing de novo genome assemblies
inferredcites →https://doi.org/10.1186/s13059-017-1213-3openalex-snapshot
A comparative evaluation of genome assembly reconciliation tools
inferredcites →https://doi.org/10.1371/journal.pone.0023501openalex-snapshot
Meraculous: De Novo Genome Assembly with Short Paired-End Reads
inferredcites →https://doi.org/10.1371/journal.pone.0060843openalex-snapshot
CISA: Contig Integrator for Sequence Assembly of Bacterial Genomes
inferredcites →https://doi.org/10.1371/journal.pone.0112963openalex-snapshot
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
inferredcites →https://doi.org/10.2174/1568026613666131204110628openalex-snapshot
GARM: Genome Assembly, Reconciliation and Merging Pipeline
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.