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CISA: Contig Integrator for Sequence Assembly of Bacterial Genomes
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1038/nrg3174openalex-snapshot
A beginner's guide to eukaryotic genome annotation
inferredcites →https://doi.org/10.1093/bib/bbq020openalex-snapshot
De novo assembly of short sequence reads
inferredcites →https://doi.org/10.1093/bioinformatics/btm542openalex-snapshot
Assembly reconciliation
inferredcites →https://doi.org/10.1093/bioinformatics/btq284openalex-snapshot
A computational genomics pipeline for prokaryotic sequencing projects
inferredcites →https://doi.org/10.1093/bioinformatics/btq366openalex-snapshot
Integrating genome assemblies with MAIA
inferredcites →https://doi.org/10.1093/bioinformatics/btr588openalex-snapshot
Graph accordance of next-generation sequence assemblies
inferredcites →https://doi.org/10.1101/gr.072033.107openalex-snapshot
De novo bacterial genome sequencing: Millions of very short reads assembled on a desktop computer
inferredcites →https://doi.org/10.1101/gr.074492.107openalex-snapshot
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
inferredcites →https://doi.org/10.1101/gr.089532.108openalex-snapshot
ABySS: A parallel assembler for short read sequence data
inferredcites →https://doi.org/10.1101/gr.097261.109openalex-snapshot
De novo assembly of human genomes with massively parallel short read sequencing
inferredcites →https://doi.org/10.1101/gr.131383.111openalex-snapshot
GAGE: A critical evaluation of genome assemblies and assembly algorithms
inferredcites →https://doi.org/10.1109/bibm.2009.28openalex-snapshot
GAM: Genomic Assemblies Merger: A Graph Based Method to Integrate Different Assemblies
inferredcites →https://doi.org/10.1186/1471-2105-8-64openalex-snapshot
Minimus: a fast, lightweight genome assembler
inferredcites →https://doi.org/10.1186/gb-2004-5-2-r12openalex-snapshot
Versatile and open software for comparing large genomes
inferredcites →https://doi.org/10.1371/journal.pone.0019175openalex-snapshot
Comparing De Novo Genome Assembly: The Long and Short of It
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.2139/ssrn.4673864openalex-extracted
A Comparative Analysis of Phage Classification Methods in Light of the Recent Ictv Taxonomic Revisions
inferred← citeshttps://doi.org/10.1002/9781118960226.ch17openalex-snapshot
Proteogenomics ofPseudomonas aeruginosain Cystic Fibrosis Infections
inferred← citeshttps://doi.org/10.1002/fft2.401openalex-snapshot
Genomic characterization of Cronobacter sakazakii strains in the neonatal meningitis clonal complex 4
inferred← citeshttps://doi.org/10.1002/mbo3.242openalex-snapshot
Comparative genomic analysis of seven M ycoplasma hyosynoviaestrains
inferred← citeshttps://doi.org/10.1007/978-1-4939-3572-7_21openalex-snapshot
Bacterial Genomic Data Analysis in the Next-Generation Sequencing Era
inferred← citeshttps://doi.org/10.1007/s00203-020-01855-6openalex-snapshot
Ornithinibacillus caprae sp. nov., a moderate halophile isolated from the hides of a white goat
inferred← citeshttps://doi.org/10.1007/s00203-020-02135-zopenalex-snapshot
Paenibacillus puerhi sp. nov., isolated from the rhizosphere soil of Pu-erh tea plants (Camellia sinensis var. assamica)
inferred← citeshttps://doi.org/10.1007/s00203-020-02151-zopenalex-snapshot
Puerhibacterium puerhi gen. nov., sp. nov., a novel member of the family Promicromonosporaceae, isolated from Pu-erh tea pile-fermentation
inferred← citeshttps://doi.org/10.1007/s00203-023-03501-3openalex-snapshot
Streptomonospora mangrovi sp. nov., isolated from mangrove soil showing similar metabolic capabilities, but distinct secondary metabolites profiles
inferred← citeshttps://doi.org/10.1007/s00203-024-04069-2openalex-snapshot
Saccharopolyspora mangrovi sp. nov., a novel mangrove soil actinobacterium with distinct metabolic potential revealed by comparative genomic analysis
inferred← citeshttps://doi.org/10.1007/s00284-020-01905-8openalex-snapshot
First Report of Isolation and Genome Sequence of L. petauri Strain from a Rainbow Trout Lactococcosis Outbreak
inferred← citeshttps://doi.org/10.1007/s00284-020-01989-2openalex-snapshot
Description of Salinicola corii sp. nov., a Halotolerant Bacterium Isolated from Wetsalted Hides
inferred← citeshttps://doi.org/10.1007/s00284-022-02784-xopenalex-snapshot
Pseudonocardia humida sp. nov., an Actinomycete Isolated from Mangrove Soil Showing Distinct Distribution Pattern of Biosynthetic Gene Clusters
inferred← citeshttps://doi.org/10.1007/s00284-022-02891-9openalex-snapshot
Brevibacillus dissolubilis sp. nov., Isolated from Fresh Water
inferred← citeshttps://doi.org/10.1007/s00284-025-04307-wopenalex-snapshot
Moraxella marmotae sp. nov. Isolated from the Respiratory Tract of Marmota himalayana
inferred← citeshttps://doi.org/10.1007/s00284-025-04527-0openalex-snapshot
Pseudomonas algeriensis sp. nov.: A Promising Phosphate-Solubilizing Endophytic Bacterium Isolated from Legume Root Nodules in the Coastal Dunes of Northwest Algeria
inferred← citeshttps://doi.org/10.1007/s00792-025-01397-zopenalex-snapshot
Draft genome sequence and comparative genomic analysis of Halomonas salifodinae strain A2 isolated from the Zapotitlán Salinas Valley, Puebla, Mexico
inferred← citeshttps://doi.org/10.1007/s10123-024-00569-9openalex-snapshot
Characterization, whole-genome sequence analysis, and protease production of a new thermophilic Bacillus licheniformis strain isolated from Debagh hot spring, Algeria
inferred← citeshttps://doi.org/10.1007/s10123-024-00624-5openalex-snapshot
Is Pseudofrankia, the non-nitrogen-fixing and/or non-nodulating actinorhizal nodule dweller, mutualistic or parasitic? Insights from genome-predictive analysis
inferred← citeshttps://doi.org/10.1007/s10482-020-01505-3openalex-snapshot
Description and genomic characterization of Streptococcus symci sp. nov., isolated from a child’s oropharynx
inferred← citeshttps://doi.org/10.1007/s10482-021-01638-zopenalex-snapshot
Genomic molecular signatures determined characterization of Mycolicibacterium gossypii sp. nov., a fast-growing mycobacterial species isolated from cotton field soil
inferred← citeshttps://doi.org/10.1007/s10482-023-01895-0openalex-snapshot
Leucobacter edaphi sp. nov., a highly chromate-tolerant bacterium isolated from chromium containing chemical plant soil
inferred← citeshttps://doi.org/10.1007/s10482-024-01953-1openalex-snapshot
Targeting methanotrophs and isolation of a novel psychrophilic Methylobacter species from a terrestrial Arctic alkaline methane seep in Lagoon Pingo, Central Spitsbergen (78° N)
inferred← citeshttps://doi.org/10.1007/s10482-025-02120-wopenalex-snapshot
Zhengella sedimenti sp. nov. and Phycobacter sedimenti sp. nov., two novel bacteria isolated from coastal sediment with genomic and metabolic analysis
inferred← citeshttps://doi.org/10.1007/s11033-019-05174-yopenalex-snapshot
Campylobacter jejuni isolated from poultry meat in Brazil: in silico analysis and genomic features of two strains with different phenotypes of antimicrobial susceptibility
inferred← citeshttps://doi.org/10.1007/s11259-017-9679-8openalex-snapshot
Investigation of intra-herd spread of Mycobacterium caprae in cattle by generation and use of a whole-genome sequence
inferred← citeshttps://doi.org/10.1007/s11259-018-9736-yopenalex-snapshot
Isolation and characterization of two lytic bacteriophages against Staphylococcus aureus from India: newer therapeutic agents against Bovine mastitis
inferred← citeshttps://doi.org/10.1007/s11274-022-03299-0openalex-snapshot
Genome mining of Burkholderia ambifaria strain T16, a rhizobacterium able to produce antimicrobial compounds and degrade the mycotoxin fusaric acid
inferred← citeshttps://doi.org/10.1007/s12602-025-10765-2openalex-snapshot
Genomic Analysis, Safety Evaluation, and Incorporation of Probiotic Candidate Lactiplantibacillus plantarum Jb21-11 into an Ice Cream Formulation
inferred← citeshttps://doi.org/10.1007/s13205-020-02205-5openalex-snapshot
Decolorization and biodegradation of textile di-azo dye Acid Blue 113 by Pseudomonas stutzeri AK6
inferred← citeshttps://doi.org/10.1007/s13353-024-00905-9openalex-snapshot
Comparative genome analysis of endophytic Bacillus amyloliquefaciens MR4: a potential biocontrol agent isolated from wild medicinal plant root tissue
inferred← citeshttps://doi.org/10.1007/s42770-019-00050-0openalex-snapshot
Genome sequence of Xanthomonas fuscans subsp. fuscans strain Xff49: a new isolate obtained from common beans in Southern Brazil
inferred← citeshttps://doi.org/10.1016/j.aqrep.2025.102993openalex-snapshot
Discovery of bacteriocins from Enterococcus thailandicus HR23 and its role in mediating growth and immune response in rainbow trout (Oncorhynchus mykiss)
inferred← citeshttps://doi.org/10.1016/j.cej.2022.137617openalex-snapshot
Genomic insights to facilitate the construction of a high-xylose-utilization Enterococcus faecalis OPS2 for 2,3-BDO production
inferred← citeshttps://doi.org/10.1016/j.compbiolchem.2021.107516openalex-snapshot
Efficient assembly consensus algorithms for divergent contig sets
inferred← citeshttps://doi.org/10.1016/j.dib.2017.11.049openalex-snapshot
Complete genome sequence of native Bacillus cereus strains isolated from intestinal tract of the crab Ucides sp.
inferred← citeshttps://doi.org/10.1016/j.dib.2022.108695openalex-snapshot
Draft genome sequence of Thermovorax subterraneus 70BT, a thermophile isolated from a geothermally active underground mine that produces hydrogen
inferred← citeshttps://doi.org/10.1016/j.ejbt.2018.04.002openalex-snapshot
Draft genomes and reference transcriptomes extend the coding potential of the fish pathogen Piscirickettsia salmonis
inferred← citeshttps://doi.org/10.1016/j.envres.2024.118751openalex-snapshot
Multi-omics association study of hexadecane degradation in haloarchaeal strain Halogranum rubrum RO2-11
inferred← citeshttps://doi.org/10.1016/j.foodres.2024.115299openalex-snapshot
Niche-specific evolution and gene exchange of Salmonella in retail pork and chicken
inferred← citeshttps://doi.org/10.1016/j.fsi.2022.03.028openalex-snapshot
Listeria monocytogenes isolates from Cornu aspersum snails: Whole genome-based characterization and host-pathogen interactions in a snail infection model
inferred← citeshttps://doi.org/10.1016/j.gdata.2016.01.010openalex-snapshot
Draft genome of Leisingera aquaemixtae CECT 8399 T , a member of the Roseobacter clade isolated from a junction of fresh and ocean water in Jeju Island, South Korea
inferred← citeshttps://doi.org/10.1016/j.gdata.2016.02.013openalex-snapshot
Draft genome sequence of Psychrobacter sp. ENNN9_III, a strain isolated from water in a polluted temperate estuarine system ( Ria de Aveiro , Portugal)
inferred← citeshttps://doi.org/10.1016/j.gdata.2016.04.003openalex-snapshot
Peeping into genomic architecture by re-sequencing of Ochrobactrum intermedium M86 strain during laboratory adapted conditions
inferred← citeshttps://doi.org/10.1016/j.gene.2014.08.038openalex-snapshot
De novo assembly and characterization of the complete chloroplast genome of radish (Raphanus sativus L.)
inferred← citeshttps://doi.org/10.1016/j.genrep.2024.101941openalex-snapshot
Isolation and characterization of a multidrug-resistant carbapenem-resistant Klebsiella pneumoniae strain co-carrying IncFII/IncR-KPC-2 and phage-like plasmids
inferred← citeshttps://doi.org/10.1016/j.ijantimicag.2024.107407openalex-snapshot
In vitro antimicrobial activity of six novel β-lactam and β-lactamase inhibitor combinations and cefiderocol against NDM-producing Enterobacterales in China
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2018.12.020openalex-snapshot
Draft genome analysis of lignocellulolytic enzymes producing Aspergillus terreus with structural insight of β-glucosidases through molecular docking approach
inferred← citeshttps://doi.org/10.1016/j.jes.2025.03.051openalex-snapshot
Superoxide mediated Mn(II) oxidation of an alkali-tolerant bacterium Pseudorhizobium flavum MXJ-1
inferred← citeshttps://doi.org/10.1016/j.jgar.2025.08.018openalex-snapshot
Co-existence of mcr-1 and blaCTX−M from porcine-derived Escherichia coli isolated in China and selection of mcr-1 under cephalosporins pressure
inferred← citeshttps://doi.org/10.1016/j.margen.2022.100971openalex-snapshot
Complete genome sequencing and analysis revealed the nitrogen utilization strategy of a novel Acuticoccus species isolated from surface water of the Indian Ocean
inferred← citeshttps://doi.org/10.1016/j.margen.2026.101250openalex-snapshot
Genomic analysis of two Leisingera strains SA32 and SA215 reveals their distinct roles in marine sulfur cycling
inferred← citeshttps://doi.org/10.1016/j.meegid.2018.07.028openalex-snapshot
Whole-genome sequencing identification of a multidrug-resistant Listeria monocytogenes serotype 1/2a isolated from fresh mixed sausage in southern Brazil
inferred← citeshttps://doi.org/10.1016/j.micpath.2023.106248openalex-snapshot
Genomic typing and virulence gene profile analysis of Salmonella Derby from different sources
inferred← citeshttps://doi.org/10.1016/j.micres.2022.127258openalex-snapshot
Biocontrol of methicillin-resistant Staphylococcus aureus using a virulent bacteriophage derived from a temperate one
inferred← citeshttps://doi.org/10.1016/j.micres.2024.127833openalex-snapshot
Biocontrol efficacy of Pseudomonas mediterranea PVCT 3C against Plenodomus tracheiphilus: In vitro and in planta mechanisms at early disease stages
inferred← citeshttps://doi.org/10.1016/j.mimet.2015.04.006openalex-snapshot
MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation
inferred← citeshttps://doi.org/10.1016/j.pmpp.2025.102985openalex-snapshot
Identification and characterization of Streptomyces sp. strain NEAU-174 with biocontrol ability against tomato bacterial wilt
inferred← citeshttps://doi.org/10.1016/j.resmic.2024.104263openalex-snapshot
Characterization and identification of Pseudomonas sp. AW4, an arsenic-resistant and plant growth-promoting bacteria isolated from the soybean (Glycine max L.) rhizosphere
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2024.173221openalex-snapshot
Emergence of colistin-resistant Stenotrophomonas maltophilia with high virulence in natural aquatic environments
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2024.174368openalex-snapshot
Relevance of genetic causes and environmental adaptation of Cronobacter spp. isolated from infant and follow-up formula production factories and retailed products in China: A 7-year period of continuous surveillance based on genome-wide analysis
inferred← citeshttps://doi.org/10.1016/j.syapm.2019.126044openalex-snapshot
Mesorhizobium intechi sp. nov. isolated from nodules of Lotus tenuis in soils of the Flooding Pampa, Argentina
inferred← citeshttps://doi.org/10.1016/j.vetmic.2016.10.015openalex-snapshot
Whole-genome comparative analysis of the pathogen Piscirickettsia salmonis
inferred← citeshttps://doi.org/10.1016/j.virol.2024.110016openalex-snapshot
A comparative analysis of phage classification methods in light of the recent ICTV taxonomic revisions
inferred← citeshttps://doi.org/10.1016/j.ygeno.2018.03.004openalex-snapshot
Whole genome sequence analysis of Geitlerinema sp. FC II unveils competitive edge of the strain in marine cultivation system for biofuel production
inferred← citeshttps://doi.org/10.1016/j.ygeno.2020.08.008openalex-snapshot
Polyphasic characterization and identification of the bioremediation agent Bacillus sp. SFC 500-1E
inferred← citeshttps://doi.org/10.1038/s41467-023-41704-wopenalex-snapshot
Evolution of lasR mutants in polymorphic Pseudomonas aeruginosa populations facilitates chronic infection of the lung
inferred← citeshttps://doi.org/10.1038/s41598-019-51668-xopenalex-snapshot
Detection and identification of transgenic events by next generation sequencing combined with enrichment technologies
inferred← citeshttps://doi.org/10.1038/s41598-019-51831-4openalex-snapshot
The whole-genome sequence analysis of Morchella sextelata
inferred← citeshttps://doi.org/10.1038/s41598-025-06760-wopenalex-snapshot
Novel gut bacteria species Paenibacillus ilasis with phosphorus degrading and soluble starch hydrolysis abilities isolated from fresh feces of rhinoceros
inferred← citeshttps://doi.org/10.1038/srep43149openalex-snapshot
The hidden perils of read mapping as a quality assessment tool in genome sequencing
inferred← citeshttps://doi.org/10.1080/08905436.2024.2382859openalex-snapshot
Comprehensive in vitro and in silico Evaluation of Safety and Probiotic Potential of Lactiplantibacillus plantarum strain LFN10
inferred← citeshttps://doi.org/10.1080/23802359.2020.1788441openalex-snapshot
The complete mitochondrial genome of Antarctic Phaeodactylum tricornutum ICE-H
inferred← citeshttps://doi.org/10.1093/bib/bbac443openalex-snapshot
High-resolution shotgun metagenomics: the more data, the better?
inferred← citeshttps://doi.org/10.1093/bioinformatics/btaf474openalex-snapshot
Autocycler: long-read consensus assembly for bacterial genomes
inferred← citeshttps://doi.org/10.1093/bioinformatics/btu135openalex-snapshot
Orione, a web-based framework for NGS analysis in microbiology
inferred← citeshttps://doi.org/10.1093/bioinformatics/btv465openalex-snapshot
GMcloser: closing gaps in assemblies accurately with a likelihood-based selection of contig or long-read alignments
inferred← citeshttps://doi.org/10.1093/bioinformatics/bty255openalex-snapshot
Novo&Stitch: accurate reconciliation of genome assemblies via optical maps
inferred← citeshttps://doi.org/10.1093/femsle/fnu064openalex-snapshot
Specific genetic features of Campylobacter jejuni strain G1 revealed by genome sequencing
inferred← citeshttps://doi.org/10.1093/femsle/fnv068openalex-snapshot
Lactobacillus fermentum 3872 genome sequencing reveals plasmid and chromosomal genes potentially involved in a probiotic activity
inferred← citeshttps://doi.org/10.1093/gbe/evv030openalex-snapshot
Two Host Clades, Two Bacterial Arsenals: Evolution through Gene Losses in Facultative Endosymbionts
inferred← citeshttps://doi.org/10.1093/gbe/evz263openalex-snapshot
The Mitogenome of Norway Spruce and a Reappraisal of Mitochondrial Recombination in Plants
inferred← citeshttps://doi.org/10.1093/jac/dkw149openalex-snapshot
Colistin resistance inSalmonellaandEscherichia coliisolates from a pig farm in Great Britain
inferred← citeshttps://doi.org/10.1093/jaoacint/qsae089openalex-snapshot
Optimizing Salmonella Detection in Beijing’s Surface Water: Unveiling Rare Serotypes with a Modified Moore Swab (MMS) Method
inferred← citeshttps://doi.org/10.1093/nar/gkv424openalex-snapshot
Accurate identification of centromere locations in yeast genomes using Hi-C
inferred← citeshttps://doi.org/10.1099/ijsem.0.003700openalex-snapshot
Rhodoferax bucti sp. nov., isolated from fresh water
inferred← citeshttps://doi.org/10.1099/ijsem.0.004030openalex-snapshot
Dyadobacter bucti sp. nov., isolated from subsurface sediment
inferred← citeshttps://doi.org/10.1099/ijsem.0.004274openalex-snapshot
Phytoactinopolyspora mesophila sp. nov., isolated from a saline–alkaline soil
inferred← citeshttps://doi.org/10.1099/ijsem.0.004408openalex-snapshot
Planctomonas psychrotolerans sp. nov., isolated from rhizosphere soil of Suaeda salsa
inferred← citeshttps://doi.org/10.1099/ijsem.0.004426openalex-snapshot
Halomonas pellis sp. nov., a moderately halophilic bacterium isolated from wetsalted hides
inferred← citeshttps://doi.org/10.1099/ijsem.0.004489openalex-snapshot
Aliikangiella coralliicola sp. nov., a bacterium isolated from coral Porites lutea, and proposal of Pleioneaceae fam. nov. to accommodate Pleionea and Aliikangiella
inferred← citeshttps://doi.org/10.1099/ijsem.0.004923openalex-snapshot
Leucobacter chromiisoli sp. nov., isolated from chromium-containing chemical plant soil
inferred← citeshttps://doi.org/10.1099/ijsem.0.004935openalex-snapshot
Steroidobacter gossypii sp. nov., isolated from cotton field soil
inferred← citeshttps://doi.org/10.1099/ijsem.0.004992openalex-snapshot
Massilia puerhi sp. nov., isolated from soil of Pu-erh tea cellar
inferred← citeshttps://doi.org/10.1099/ijsem.0.005232openalex-snapshot
Noviherbaspirillum aridicola sp. nov., isolated from an arid soil in Pakistan
inferred← citeshttps://doi.org/10.1099/ijsem.0.005265openalex-snapshot
Thermus brevis sp. nov., a moderately thermophilic bacterium isolated from a hot spring microbial mat
inferred← citeshttps://doi.org/10.1099/ijsem.0.005352openalex-snapshot
Occultella gossypii sp. nov., an alkali-resistant isolate from soil sampled in a cotton field
inferred← citeshttps://doi.org/10.1099/ijsem.0.005832openalex-snapshot
Actinophytocola gossypii sp. nov. and Streptomyces gossypii sp. nov., two novel actinomycetes isolated from rhizosphere soil of cotton
inferred← citeshttps://doi.org/10.1099/ijsem.0.006178openalex-snapshot
Blastococcus carthaginiensis sp. nov., isolated from a monument sampled in Carthage, Tunisia
inferred← citeshttps://doi.org/10.1099/ijsem.0.006260openalex-snapshot
Paenibacillus baimaensis sp. nov., a bacterium isolated from mountain soil in the habitat of Rhinopithecus bieti
inferred← citeshttps://doi.org/10.1099/ijsem.0.006590openalex-snapshot
Genomic profiling and assessment of the plant growth-enhancing traits in the novel actinomycete, Plantactinospora soli sp. nov.
inferred← citeshttps://doi.org/10.1099/ijsem.0.006646openalex-snapshot
Pseudomonas retamae sp. nov., a novel endophytic bacterium with plant growth-promoting potential, isolated from root nodules of Retama monosperma in Northwestern Algeria
inferred← citeshttps://doi.org/10.1099/ijsem.0.006752openalex-snapshot
Sinomonas puerhi sp. nov. isolated from the rhizosphere soil of Pu-erh tea based on whole-genomic profiling
inferred← citeshttps://doi.org/10.1099/ijsem.0.006912openalex-snapshot
Description of Neorhizobium tunisiense sp. nov., reclassification of Neorhizobium xiangyangii as Pseudorhizobium xiangyangii comb. nov. and proposal of Terrirhizobium terrae gen. nov., comb. nov. to accommodate the divergent species Aliirhizobium terrae
inferred← citeshttps://doi.org/10.1099/ijsem.0.006955openalex-snapshot
Caballeronia eucalypticola sp. nov., isolated from the xylem tissues of eucalyptus
inferred← citeshttps://doi.org/10.1099/ijsem.0.007163openalex-snapshot
Description of Ornithinimicrobium pulveris sp. nov. and Ornithinimicrobium carbonis sp. nov., isolated from a coal mine working environment
inferred← citeshttps://doi.org/10.1099/jmm.0.002107openalex-snapshot
Serotypes, antibiotic susceptibility and whole-genome characterization of Streptococcus pneumoniae in Sichuan Province, China in 2023
inferred← citeshttps://doi.org/10.1099/mgen.0.000526openalex-snapshot
Unique roles of vaginal Megasphaera phylotypes in reproductive health
inferred← citeshttps://doi.org/10.1101/2025.08.07.669053openalex-snapshot
Protein Function Prediction via Contig-Aware Multi-Level Feature Integration
inferred← citeshttps://doi.org/10.1101/283101openalex-snapshot
Tychus: a whole genome sequencing pipeline for assembly, annotation and phylogenetics of bacterial genomes
inferred← citeshttps://doi.org/10.1101/483701openalex-snapshot
NucMerge: Genome assembly quality improvement assisted by alternative assemblies and paired-end Illumina reads
inferred← citeshttps://doi.org/10.1101/gr.257766.119openalex-snapshot
TransBorrow: genome-guided transcriptome assembly by borrowing assemblies from different assemblers
inferred← citeshttps://doi.org/10.1111/1574-6968.12577openalex-snapshot
Draft genome sequences of threeHolosporaspecies (Holospora obtusa,Holospora undulata, andHolospora elegans), endonuclear symbiotic bacteria of the ciliateParamecium caudatum
inferred← citeshttps://doi.org/10.1111/1755-0998.13923openalex-snapshot
A pan‐genomic approach reveals novel Sulfurimonas clade in the ferruginous meromictic Lake Pavin
inferred← citeshttps://doi.org/10.1111/jfd.13713openalex-snapshot
Genomic features of Pseudomonas sp. RGM2144 correlates with increased survival of rainbow trout infected by Flavobacterium psychrophilum
inferred← citeshttps://doi.org/10.1128/aem.00329-25openalex-snapshot
Comparative genomics-based insights into Pantoea ananatis strains, isolated from white spot diseased leaves of maize with plant growth-promoting attributes
inferred← citeshttps://doi.org/10.1128/genomea.00003-18openalex-snapshot
Genome Sequence of Coxiella-Like Endosymbiont Strain CLE-RmD, a Bacterial Agent in the Cattle Tick (Rhipicephalus microplus) Deutsch Strain
inferred← citeshttps://doi.org/10.1128/genomea.00211-16openalex-snapshot
Draft Genome Sequence of Paenibacillus sp. Strain DMB5, Acclimatized and Enriched for Catabolizing Anthropogenic Compounds
inferred← citeshttps://doi.org/10.1128/genomea.00233-15openalex-snapshot
Genome Sequence of Magnetospirillum magnetotacticum Strain MS-1
inferred← citeshttps://doi.org/10.1128/genomea.00245-15openalex-snapshot
Genome Sequence of Bacillus mycoides B38V, a Growth-Promoting Bacterium of Sunflower
inferred← citeshttps://doi.org/10.1128/genomea.00246-15openalex-snapshot
Whole-Genome Shotgun Sequence of the Keratinolytic Bacterium Lysobacter sp. A03, Isolated from the Antarctic Environment
inferred← citeshttps://doi.org/10.1128/genomea.00248-15openalex-snapshot
Genome of Pseudomonas sp. FeS53a, a Putative Plant Growth-Promoting Bacterium Associated with Rice Grown in Iron-Stressed Soils
inferred← citeshttps://doi.org/10.1128/genomea.00249-15openalex-snapshot
Genome of Rhizobium sp. UR51a, Isolated from Rice Cropped in Southern Brazilian Fields
inferred← citeshttps://doi.org/10.1128/genomea.00367-16openalex-snapshot
Draft Genome Sequence of Hydrocarbon-Degrading Enterobacter cloacae Strain S1:CND1, Isolated from Crude Oil-Contaminated Soil from the Noonmati Oil Refinery, Guwahati, Assam, India
inferred← citeshttps://doi.org/10.1128/genomea.00370-16openalex-snapshot
Draft Genome Sequence of Hydrocarbon-Degrading Staphylococcus saprophyticus Strain CNV2, Isolated from Crude Oil-Contaminated Soil from the Noonmati Oil Refinery, Guwahati, Assam, India
inferred← citeshttps://doi.org/10.1128/genomea.00406-17openalex-snapshot
Draft Genome Sequences of Mycobacterium kansasii Clinical Strains
inferred← citeshttps://doi.org/10.1128/genomea.00436-15openalex-snapshot
Draft Genome Sequence of Bacillus sp. Strain CMAA 1185, a Cellullolytic Bacterium Isolated from Stain House Lake, Antarctic Peninsula
inferred← citeshttps://doi.org/10.1128/genomea.00536-14openalex-snapshot
Draft Genome Sequence of the Mycobacterium tuberculosis Clinical Isolate C2, Belonging to the Latin American–Mediterranean Family
inferred← citeshttps://doi.org/10.1128/genomea.00552-14openalex-snapshot
Genome Sequences of Seven Mycoplasma hyosynoviae Strains Isolated from the Joint Tissue of Infected Swine (Sus scrofa)
inferred← citeshttps://doi.org/10.1128/genomea.00554-15openalex-snapshot
Draft Genome Sequence of Paenibacillus sp. Strain DMB20, Isolated from Alang Ship-Breaking Yard, Which Harbors Genes for Xenobiotic Degradation
inferred← citeshttps://doi.org/10.1128/genomea.00627-17openalex-snapshot
Draft Genome Sequences of Pseudoalteromonas tetraodonis CSB01KR and Pseudoalteromonas lipolytica CSB02KR, Isolated from the Gut of the Sea Cucumber Apostichopus japonicus
inferred← citeshttps://doi.org/10.1128/genomea.00672-14openalex-snapshot
Draft Genome Sequences of the Mycobacterium tuberculosis Clinical Strains A2 and A4, Isolated from a Relapse Patient in Taiwan
inferred← citeshttps://doi.org/10.1128/genomea.00674-17openalex-snapshot
Genome Sequences of Two Shewanella spp. Isolated from the Gut of the Sea Cucumber Apostichopus japonicus (Selenka, 1867)
inferred← citeshttps://doi.org/10.1128/genomea.00754-17openalex-snapshot
Draft Genome Sequence of Deinococcus indicus DR1, a Novel Strain Isolated from a Freshwater Wetland
inferred← citeshttps://doi.org/10.1128/genomea.00763-13openalex-snapshot
Whole-Genome Shotgun Sequencing of Rhodococcus erythropolis Strain P27, a Highly Radiation-Resistant Actinomycete from Antarctica
inferred← citeshttps://doi.org/10.1128/genomea.00788-14openalex-snapshot
Draft Genome Sequence of Hexachlorohexane (HCH)-Degrading Sphingobium lucknowense Strain F2 T , Isolated from an HCH Dumpsite
inferred← citeshttps://doi.org/10.1128/genomea.00812-14openalex-snapshot
Draft Genome Sequence of Haloferax sp. Strain ATB1, Isolated from a Semi-Arid Region in the Brazilian Caatinga
inferred← citeshttps://doi.org/10.1128/genomea.00841-16openalex-snapshot
Draft Genome Sequences of Stenotrophomonas maltophilia Strains Sm32COP, Sm41DVV, Sm46PAILV, SmF3, SmF22, SmSOFb1, and SmCVFa1, Isolated from Different Manures in France
inferred← citeshttps://doi.org/10.1128/genomea.00846-15openalex-snapshot
Draft Genome Assembly of Filamentous Brackish Cyanobacterium Limnoraphis robusta Strain CS-951
inferred← citeshttps://doi.org/10.1128/genomea.00871-16openalex-snapshot
Draft Genome Sequences of Pseudoalteromonas telluritireducens DSM 16098 and P. spiralis DSM 16099 Isolated from the Hydrothermal Vents of the Juan de Fuca Ridge
inferred← citeshttps://doi.org/10.1128/genomea.00872-16openalex-snapshot
Draft Genome Sequence of Alcanivorax sp. Strain KX64203 Isolated from Deep-Sea Sediments of Iheya North, Okinawa Trough
inferred← citeshttps://doi.org/10.1128/genomea.00903-15openalex-snapshot
Draft Genome Sequence of Neisseria gonorrhoeae Sequence Type 1407, a Multidrug-Resistant Clinical Isolate
inferred← citeshttps://doi.org/10.1128/genomea.00910-15openalex-snapshot
Draft Genome Sequences of Leptospira santarosai Strains U160, U164, and U233, Isolated from Asymptomatic Cattle
inferred← citeshttps://doi.org/10.1128/genomea.00995-13openalex-snapshot
Draft Genome Sequence of Pseudomonas sp. Strain CMAA 1215, a Plant Growth-Promoting Bacterium Isolated from a Brazilian Mangrove
inferred← citeshttps://doi.org/10.1128/genomea.01018-17openalex-snapshot
Draft Genome Sequence of Klebsiella pneumoniae OK8, a Multidrug-Resistant Mouse and Human Pathogen
inferred← citeshttps://doi.org/10.1128/genomea.01069-13openalex-snapshot
Draft Genome Sequence of NDM-1-Producing Klebsiella pneumoniae Clinical Isolate 303K
inferred← citeshttps://doi.org/10.1128/genomea.01202-13openalex-snapshot
Draft Genome Sequence of Asaia sp. Strain SF2.1, an Important Member of the Microbiome of Anopheles Mosquitoes
inferred← citeshttps://doi.org/10.1128/genomea.01218-13openalex-snapshot
Complete Genome Sequence of Paenibacillus polymyxa CR1, a Plant Growth-Promoting Bacterium Isolated from the Corn Rhizosphere Exhibiting Potential for Biocontrol, Biomass Degradation, and Biofuel Production
inferred← citeshttps://doi.org/10.1128/genomea.01237-15openalex-snapshot
Whole-Genome Sequences of Mycobacterium bovis Strain MbURU-001, Isolated from Fresh Bovine Infected Samples
inferred← citeshttps://doi.org/10.1128/genomea.01245-14openalex-snapshot
Complete Genome Sequence of Haemophilus influenzae Strain 375 from the Middle Ear of a Pediatric Patient with Otitis Media
inferred← citeshttps://doi.org/10.1128/genomea.01264-13openalex-snapshot
Draft Genome Sequence of Bacillus thuringiensis Strain BrMgv02-JM63, a Chitinolytic Bacterium Isolated from Oil-Contaminated Mangrove Soil in Brazil
inferred← citeshttps://doi.org/10.1128/genomea.01264-15openalex-snapshot
Draft Genome Sequence of Achromobacter sp. Strain DMS1, Capable of Degrading Polyaromatic Hydrocarbons Isolated from the Industrially Perturbed Environment of Amlakhadi Canal, India
inferred← citeshttps://doi.org/10.1128/genomea.01299-16openalex-snapshot
Draft Genome Sequence of Microcystis aeruginosa CACIAM 03, a Cyanobacterium Isolated from an Amazonian Freshwater Environment
inferred← citeshttps://doi.org/10.1128/genomea.01344-14openalex-snapshot
Draft Genome Sequences of Vibrio fluvialis Strains 560 and 539, Isolated from Environmental Samples
inferred← citeshttps://doi.org/10.1128/genomea.01392-14openalex-snapshot
Draft Genome Sequence of the Cyanobacterium Aphanizomenon flos-aquae Strain 2012/KM1/D3, Isolated from the Curonian Lagoon (Baltic Sea)
inferred← citeshttps://doi.org/10.1128/genomea.01404-14openalex-snapshot
Draft Genome Sequences of Two Drug-Resistant Isolates of Pseudomonas aeruginosa Obtained from Keratitis Patients in India
inferred← citeshttps://doi.org/10.1128/genomea.01439-15openalex-snapshot
Draft Genome Sequence of a Probiotic Strain, Lactobacillus fermentum UCO-979C
inferred← citeshttps://doi.org/10.1128/genomea.01472-15openalex-snapshot
Draft Genome Sequence of CO33, a Coffee-Infecting Isolate of Xylella fastidiosa
inferred← citeshttps://doi.org/10.1128/genomea.01480-16openalex-snapshot
Draft Genome Sequence of JVAP01 T , the Type Strain of the Novel Species Acinetobacter dijkshoorniae
inferred← citeshttps://doi.org/10.1128/genomea.01493-16openalex-snapshot
Draft Genome Sequences of Four Alkaliphilic Bacteria Belonging to the Anaerobacillus Genus
inferred← citeshttps://doi.org/10.1128/genomea.01532-15openalex-snapshot
Draft Genome Sequence of Lactobacillus plantarum 2025
inferred← citeshttps://doi.org/10.1128/genomea.01538-14openalex-snapshot
Draft Genome Sequence of the Xylella fastidiosa CoDiRO Strain
inferred← citeshttps://doi.org/10.1128/genomea.01546-16openalex-snapshot
Draft Genome Sequence of the Axenic Strain Phormidesmis priestleyi ULC007, a Cyanobacterium Isolated from Lake Bruehwiler (Larsemann Hills, Antarctica)
inferred← citeshttps://doi.org/10.1128/genomea.01568-14openalex-snapshot
Genome Sequence and Annotation of a Human Infection Isolate of Escherichia coli O26:H11 Involved in a Raw Milk Cheese Outbreak
inferred← citeshttps://doi.org/10.1128/genomea.01587-15openalex-snapshot
Draft Genome Sequence of “ Cohnella kolymensis ” B-2846
inferred← citeshttps://doi.org/10.1128/genomea.01620-16openalex-snapshot
Draft Genome Sequence of Mycobacterium chimaera Type Strain Fl-0169
inferred← citeshttps://doi.org/10.1128/genomea.01661-15openalex-snapshot
Draft Whole-Genome Sequence of Haemophilus ducreyi Strain AUSPNG1, Isolated from a Cutaneous Ulcer of a Child from Papua New Guinea
inferred← citeshttps://doi.org/10.1128/iai.00574-17openalex-snapshot
Whole-Genome Characterization of Bacillus cereus Associated with Specific Disease Manifestations
inferred← citeshttps://doi.org/10.1128/mbio.00617-20openalex-snapshot
EspFu-Mediated Actin Assembly Enhances Enteropathogenic Escherichia coli Adherence and Activates Host Cell Inflammatory Signaling Pathways
inferred← citeshttps://doi.org/10.1128/mra.00032-23openalex-snapshot
Whole Genome Sequencing of Brucella melitensis Isolated from Patients in Hohhot, China
inferred← citeshttps://doi.org/10.1128/mra.00088-22openalex-snapshot
Draft Genome Sequence of Microaerobacter geothermalis Nad S1 T , a Microaerophilic Bacterium Isolated from Tenusia Hot Spring
inferred← citeshttps://doi.org/10.1128/mra.00273-24openalex-snapshot
Draft genome sequence of Xanthomonas arboricola pv. pruni PVCT 262.1 isolated from Prunus dulcis in italy
inferred← citeshttps://doi.org/10.1128/mra.00329-22openalex-snapshot
Complete Genome Sequence of Paenibacillus polymyxa DSM 365, a Soil Bacterium of Agricultural and Industrial Importance
inferred← citeshttps://doi.org/10.1128/mra.00377-24openalex-snapshot
Draft genome sequence of Rhodotorula sp. BUB8, an oleaginous yeast isolated from Mt. Makiling Forest Reserve, Laguna, Philippines
inferred← citeshttps://doi.org/10.1128/mra.00441-25openalex-snapshot
Draft genome of Rossellomorea sp. DUT-2 with Mn(II) oxidation properties isolated from nearshore surface sediments of Liaodong Bay
inferred← citeshttps://doi.org/10.1128/mra.00474-25openalex-snapshot
Draft genome sequences of three Pantoea strains promoting the growth of wheat, isolated from desert plant rhizosphere soils
inferred← citeshttps://doi.org/10.1128/mra.00479-24openalex-snapshot
Complete genome sequence of Bacillus megaterium strain DY294, a strain of Bacillus isolated from Arshan Resort in Hulunbuir
inferred← citeshttps://doi.org/10.1128/mra.00512-20openalex-snapshot
Draft Genome Sequence and Biosynthetic Potential of the Newly Described Strain Longimicrobium terrae CB-286315 T
inferred← citeshttps://doi.org/10.1128/mra.00513-22openalex-snapshot
Whole-Genome Sequence of Lactiplantibacillus plantarum Mut-3, Isolated from Indonesian Fermented Soybean (Tempeh)
inferred← citeshttps://doi.org/10.1128/mra.00856-18openalex-snapshot
Draft Genome Sequence of Bacillus cereus Strain UAEU-H3K6M1, a Bacterium with Potential Bioremediation Abilities, Isolated from Petroleum Sludge
inferred← citeshttps://doi.org/10.1128/mra.00867-22openalex-snapshot
Draft Genome Sequences of Four Methicillin-Resistant Staphylococcus aureus Strains (M080_2017, M106_2017, M181_2017, and M191_2017), Isolated from a Malaysian Teaching Hospital
inferred← citeshttps://doi.org/10.1128/mra.00960-24openalex-snapshot
Draft genome sequence of Devosia sp. WQ 349k1, isolated from the feces of Bos taurus
inferred← citeshttps://doi.org/10.1128/mra.01105-25openalex-snapshot
Draft genome sequence of the basidiomycetous yeast Rhodosporidiobolus colostri DBVPG 10655, a cold-adapted degrader of lignin-derived monoaromatic compounds
inferred← citeshttps://doi.org/10.1128/mra.01217-25openalex-snapshot
Draft genome of Mn(II)-oxidizing bacterium Hydrogenophaga sp. ZJX-1 isolated from coastal sediments in Liaoning, China
inferred← citeshttps://doi.org/10.1128/spectrum.00118-22openalex-snapshot
Genomic Analysis of Mycobacterium abscessus Complex Isolates from Patients with Pulmonary Infection in China
inferred← citeshttps://doi.org/10.1128/spectrum.01241-25openalex-snapshot
Screening microbial inhibitors of Pseudogymnoascus destructans in Northern China
inferred← citeshttps://doi.org/10.1128/spectrum.01372-21openalex-snapshot
Classification of 27 Corynebacterium kroppenstedtii -Like Isolates Associated with Mastitis in China and Descriptions of C. parakroppenstedtii sp. nov. and C. pseudokroppenstedtii sp. nov
inferred← citeshttps://doi.org/10.1128/spectrum.01953-24openalex-snapshot
Emergence and clonal dissemination of KPC-2- and NDM-1-coharboring Citrobacter freundii in China with an IncR plasmid
inferred← citeshttps://doi.org/10.1128/spectrum.04772-22openalex-snapshot
Comparative Genomic Analysis Reveals Genetic Diversity and Pathogenic Potential of Haemophilus seminalis and Emended Description of Haemophilus seminalis
inferred← citeshttps://doi.org/10.1134/s0026261723600477openalex-snapshot
Caldimonas mangrovi sp. nov., Isolated from Mangrove Soil
inferred← citeshttps://doi.org/10.1177/10766294251361345openalex-snapshot
An Outbreak of ST80 Vancomycin-Resistant Enterococcus faecium in a Hospital in Guangzhou, China: Clinical and Genomic Epidemiology Study from 2022 to 2023
inferred← citeshttps://doi.org/10.1186/1944-3277-10-2openalex-snapshot
Genome sequence and description of the mosquitocidal and heavy metal tolerant strain Lysinibacillus sphaericus CBAM5
inferred← citeshttps://doi.org/10.1186/s12864-016-2859-zopenalex-snapshot
Genome of Rhizobium leucaenae strains CFN 299T and CPAO 29.8: searching for genes related to a successful symbiotic performance under stressful conditions
inferred← citeshttps://doi.org/10.1186/s12864-017-4249-6openalex-snapshot
Whole genome sequencing of the monomorphic pathogen Mycobacterium bovis reveals local differentiation of cattle clinical isolates
inferred← citeshttps://doi.org/10.1186/s12864-018-4813-8openalex-snapshot
Study of spontaneous mutations in the transmission of poplar chloroplast genomes from mother to offspring
inferred← citeshttps://doi.org/10.1186/s12866-017-0931-8openalex-snapshot
Genomic and transcriptomic comparison between Staphylococcus aureus strains associated with high and low within herd prevalence of intra-mammary infection
inferred← citeshttps://doi.org/10.1186/s12866-022-02514-0openalex-snapshot
Antimicrobial resistance of Escherichia coli, Enterobacter spp., Klebsiella pneumoniae and Enterococcus spp. isolated from the feces of giant panda
inferred← citeshttps://doi.org/10.1186/s12866-024-03572-2openalex-snapshot
Disruption of mgrB gene by ISkpn14 sourced from a blaKPC−2 carrying plasmid mediating polymyxin resistance against carbapenem-resistant Klebsiella pneumoniae during treatment: study on the underlying mechanisms
inferred← citeshttps://doi.org/10.1186/s12866-025-03943-3openalex-snapshot
Genome phylogenetic analysis of Brucella melitensis in Northwest China
inferred← citeshttps://doi.org/10.1186/s13059-017-1213-3openalex-snapshot
A comparative evaluation of genome assembly reconciliation tools
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