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Diversity Converges During Community Assembly In Methanogenic Granules, Suggesting A Biofilm Life-Cycle

https://doi.org/10.1101/484642
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/bit.260220402openalex-snapshot
Use of the upflow sludge blanket (USB) reactor concept for biological wastewater treatment, especially for anaerobic treatment
inferredcites →https://doi.org/10.1007/978-3-642-38954-2_408openalex-snapshot
The Family Methanosarcinaceae
inferredcites →https://doi.org/10.1007/bf00164784openalex-snapshot
Enzymatic activity in the activated-sludge floc matrix
inferredcites →https://doi.org/10.1007/s00253-009-2288-xopenalex-snapshot
Extraction of extracellular polymeric substances (EPS) from anaerobic granular sludges: comparison of chemical and physical extraction protocols
inferredcites →https://doi.org/10.1007/s11157-015-9375-5openalex-snapshot
Celebrating 40 years anaerobic sludge bed reactors for industrial wastewater treatment
inferredcites →https://doi.org/10.1016/0043-1354(82)90249-4openalex-snapshot
Standard Methods for the Examination of Water and Wastewater
inferredcites →https://doi.org/10.1016/0043-1354(95)00323-1openalex-snapshot
Extraction of extracellular polymers from activated sludge using a cation exchange resin
inferredcites →https://doi.org/10.1016/0167-7012(96)00915-3openalex-snapshot
Simple method for the measurement of the hydrogenotrophic methanogenic activity of anaerobic sludges
inferredcites →https://doi.org/10.1016/j.rser.2011.07.121openalex-snapshot
Anaerobic digestion in global bio-energy production: Potential and research challenges
inferredcites →https://doi.org/10.1016/j.watres.2003.12.002openalex-snapshot
Anaerobic sludge granulation
inferredcites →https://doi.org/10.1016/s0021-9258(19)52451-6openalex-snapshot
PROTEIN MEASUREMENT WITH THE FOLIN PHENOL REAGENT
inferredcites →https://doi.org/10.1016/s0921-3449(03)00021-1openalex-snapshot
The effect of organic loading rate on the performance of UASB reactor treating slaughterhouse effluent
inferredcites →https://doi.org/10.1016/s0960-8524(98)00046-7openalex-snapshot
A review: The anaerobic treatment of sewage in UASB and EGSB reactors
inferredcites →https://doi.org/10.1021/ac60111a017openalex-snapshot
Colorimetric Method for Determination of Sugars and Related Substances
inferredcites →https://doi.org/10.1038/32096openalex-snapshot
The hydrogen hypothesis for the first eukaryote
inferredcites →https://doi.org/10.1038/35051650openalex-snapshot
An enzymic 'latch' on a global carbon store
inferredcites →https://doi.org/10.1038/415312aopenalex-snapshot
A hydrogen-based subsurface microbial community dominated by methanogens
inferredcites →https://doi.org/10.1038/ismej.2007.111openalex-snapshot
Thermodynamic constraints on methanogenic crude oil biodegradation
inferredcites →https://doi.org/10.1038/ismej.2010.207openalex-snapshot
Species sorting and neutral processes are both important during the initial assembly of bacterial communities
inferredcites →https://doi.org/10.1038/ismej.2012.22openalex-snapshot
Stochastic and deterministic assembly processes in subsurface microbial communities
inferredcites →https://doi.org/10.1038/ismej.2016.43openalex-snapshot
Genomic insights into members of the candidate phylum Hyd24-12 common in mesophilic anaerobic digesters
inferredcites →https://doi.org/10.1038/ismej.2017.56openalex-snapshot
Soil aggregates as massively concurrent evolutionary incubators
inferredcites →https://doi.org/10.1038/ncomms11965openalex-snapshot
Microbial interactions lead to rapid micro-scale successions on model marine particles
inferredcites →https://doi.org/10.1038/nmeth.f.303openalex-snapshot
QIIME allows analysis of high-throughput community sequencing data
inferredcites →https://doi.org/10.1038/nrmicro821openalex-snapshot
Bacterial biofilms: from the Natural environment to infectious diseases
inferredcites →https://doi.org/10.1073/pnas.1000604107openalex-snapshot
Combined niche and neutral effects in a microbial wastewater treatment community
inferredcites →https://doi.org/10.1080/10934520009377059openalex-snapshot
Physicochemical and microbial aspects of anaerobic granular biopellets
inferredcites →https://doi.org/10.1093/bioinformatics/btq166openalex-snapshot
Picante: R tools for integrating phylogenies and ecology
inferredcites →https://doi.org/10.1093/molbev/msv281openalex-snapshot
Comparative Genomics of Candidate Phylum TM6 Suggests That Parasitism Is Widespread and Ancestral in This Lineage
inferredcites →https://doi.org/10.1093/nar/gku1341openalex-snapshot
Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform
inferredcites →https://doi.org/10.1099/ijsem.0.001615openalex-snapshot
Desulfobulbus oligotrophicus sp. nov., a sulfate-reducing and propionate-oxidizing bacterium isolated from a municipal anaerobic sewage sludge digester
inferredcites →https://doi.org/10.1101/484642openalex-snapshot
Diversity Converges During Community Assembly In Methanogenic Granules, Suggesting A Biofilm Life-Cycle
inferredcites →https://doi.org/10.1111/j.2517-6161.1995.tb02031.xopenalex-snapshot
Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
inferredcites →https://doi.org/10.1128/aem.02985-05openalex-snapshot
Phenotypic Properties and Microbial Diversity of Methanogenic Granules from a Full-Scale Upflow Anaerobic Sludge Bed Reactor Treating Brewery Wastewater
inferredcites →https://doi.org/10.1128/aem.66.12.5488-5491.2000openalex-snapshot
Rapid Method for Coextraction of DNA and RNA from Natural Environments for Analysis of Ribosomal DNA- and rRNA-Based Microbial Community Composition
inferredcites →https://doi.org/10.1128/jb.00504-13openalex-snapshot
Flexibility of Syntrophic Enzyme Systems in Desulfovibrio Species Ensures Their Adaptation Capability to Environmental Changes
inferredcites →https://doi.org/10.1146/annurev.micro.56.012302.160705openalex-snapshot
Biofilms as Complex Differentiated Communities
inferredcites →https://doi.org/10.1186/1471-2105-6-298openalex-snapshot
Kalign – an accurate and fast multiple sequence alignment algorithm
inferredcites →https://doi.org/10.1186/1471-2164-14-s1-s7openalex-snapshot
BayesHammer: Bayesian clustering for error correction in single-cell sequencing
inferredcites →https://doi.org/10.1186/s12864-015-2194-9openalex-snapshot
A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling
inferredcites →https://doi.org/10.1371/journal.pcbi.1005752openalex-snapshot
mixOmics: An R package for ‘omics feature selection and multiple data integration
inferredcites →https://doi.org/10.1371/journal.pone.0009490openalex-snapshot
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
inferredcites →https://doi.org/10.1371/journal.pone.0061217openalex-snapshot
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
inferredcites →https://doi.org/10.2166/wst.1992.0136openalex-snapshot
Use of Methanogenic Activity Tests to Characterize Anaerobic Sludges, Screen for Anaerobic Biodegradability and Determine Toxicity Thresholds against Individual Anaerobic Trophic Groups and Species
inferredcites →https://doi.org/10.2166/wst.1993.0159openalex-snapshot
Study on Mechanism of Anaerobic Sludge Granulation in UASB Reactors
inferredcites →https://doi.org/10.2166/wst.2001.0001openalex-snapshot
New perspectives in anaerobic digestion
inferredcites →https://doi.org/10.32614/cran.package.veganopenalex-snapshot
vegan: Community Ecology Package
inferredcites →https://doi.org/10.3389/fmicb.2015.00713openalex-snapshot
The reduced genomes of Parcubacteria (OD1) contain signatures of a symbiotic lifestyle
inferredcites →https://doi.org/10.3389/fmicb.2017.00664openalex-snapshot
Bioreactor Scalability: Laboratory-Scale Bioreactor Design Influences Performance, Ecology, and Community Physiology in Expanded Granular Sludge Bed Bioreactors
inferredcites →https://doi.org/10.4056/sigs.13134openalex-snapshot
Complete genome sequence of Desulfomicrobium baculatum type strain (XT)
inferredcites →https://doi.org/10.4056/sigs.1613929openalex-snapshot
Complete genome sequence of Desulfobulbus propionicus type strain (1pr3T)

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s00449-019-02198-3openalex-snapshot
Microbiota adaptation after an alkaline pH perturbation in a full-scale UASB anaerobic reactor treating dairy wastewater
inferred← citeshttps://doi.org/10.1016/j.ese.2023.100310openalex-snapshot
Unifying concepts in methanogenic, aerobic, and anammox sludge granulation
inferred← citeshttps://doi.org/10.1080/09593330.2021.2017492openalex-snapshot
Density measurements of aerobic granular sludge
inferred← citeshttps://doi.org/10.1080/10643389.2020.1769433openalex-snapshot
Granular biofilms: Function, application, and new trends as model microbial communities
inferred← citeshttps://doi.org/10.1101/667386openalex-snapshot
De Novo Growth of Methanogenic Granules Indicates a Biofilm Life-Cycle with Complex Ecology
inferred← citeshttps://doi.org/10.1128/msystems.00323-20openalex-snapshot
Size Shapes the Active Microbiome of Methanogenic Granules, Corroborating a Biofilm Life Cycle
inferred← citeshttps://doi.org/10.20944/preprints201906.0053.v1openalex-snapshot
Granular Biofilms: Formation, Function, Application, and New Trends as Model Microbial Communities
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