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Activation and in vivo evolution of the MAIT cell transcriptome in mice and humans reveals diverse functionality

https://doi.org/10.1101/490649
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/eji.201545969openalex-snapshot
TLR signaling in human antigen‐presenting cells regulates MR1‐dependent activation of MAIT cells
inferredcites →https://doi.org/10.1007/0-387-29362-0_23openalex-snapshot
limma: Linear Models for Microarray Data
inferredcites →https://doi.org/10.1016/j.cell.2017.12.033openalex-snapshot
Non-classical Immunity Controls Microbiota Impact on Skin Immunity and Tissue Repair
inferredcites →https://doi.org/10.1016/j.celrep.2019.08.050openalex-snapshot
TCR and Inflammatory Signals Tune Human MAIT Cells to Exert Specific Tissue Repair and Effector Functions
inferredcites →https://doi.org/10.1016/j.cytogfr.2013.12.003openalex-snapshot
Cell-specific and context-dependent effects of GITR in cancer, autoimmunity, and infection
inferredcites →https://doi.org/10.1016/j.immuni.2015.09.003openalex-snapshot
Interleukin-23-Independent IL-17 Production Regulates Intestinal Epithelial Permeability
inferredcites →https://doi.org/10.1038/d41586-018-03510-zopenalex-snapshot
Killer T cells show their kinder side
inferredcites →https://doi.org/10.1038/mi.2016.39openalex-snapshot
Mucosal-associated invariant T-cell activation and accumulation after in vivo infection depends on microbial riboflavin synthesis and co-stimulatory signals
inferredcites →https://doi.org/10.1038/mi.2016.91openalex-snapshot
MR1-restricted mucosal-associated invariant T (MAIT) cells respond to mycobacterial vaccination and infection in nonhuman primates
inferredcites →https://doi.org/10.1038/nature01433openalex-snapshot
Selection of evolutionarily conserved mucosal-associated invariant T cells by MR1
inferredcites →https://doi.org/10.1038/nature11605openalex-snapshot
MR1 presents microbial vitamin B metabolites to MAIT cells
inferredcites →https://doi.org/10.1038/nature13160openalex-snapshot
T-cell activation by transitory neo-antigens derived from distinct microbial pathways
inferredcites →https://doi.org/10.1038/ncomms11653openalex-snapshot
MAIT cells are activated during human viral infections
inferredcites →https://doi.org/10.1038/ncomms14599openalex-snapshot
Stabilizing short-lived Schiff base derivatives of 5-aminouracils that activate mucosal-associated invariant T cells
inferredcites →https://doi.org/10.1038/ncomms3142openalex-snapshot
Recognition of vitamin B metabolites by mucosal-associated invariant T cells
inferredcites →https://doi.org/10.1038/ncomms4866openalex-snapshot
Parallel T-cell cloning and deep sequencing of human MAIT cells reveal stable oligoclonal TCRβ repertoire
inferredcites →https://doi.org/10.1038/ng1180openalex-snapshot
PGC-1α-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes
inferredcites →https://doi.org/10.1038/ni.1890openalex-snapshot
Antimicrobial activity of mucosal-associated invariant T cells
inferredcites →https://doi.org/10.1038/ni.2490openalex-snapshot
Shared and distinct transcriptional programs underlie the hybrid nature of iNKT cells
inferredcites →https://doi.org/10.1038/ni.3298openalex-snapshot
The burgeoning family of unconventional T cells
inferredcites →https://doi.org/10.1038/ni.3854openalex-snapshot
Cytotoxic and regulatory roles of mucosal-associated invariant T cells in type 1 diabetes
inferredcites →https://doi.org/10.1038/ni1008-1091openalex-snapshot
The Immunological Genome Project: networks of gene expression in immune cells
inferredcites →https://doi.org/10.1038/nri3384openalex-snapshot
Six-of-the-best: unique contributions of γδ T cells to immunology
inferredcites →https://doi.org/10.1038/nri3919openalex-snapshot
IL-15 functions as a danger signal to regulate tissue-resident T cells and tissue destruction
inferredcites →https://doi.org/10.1038/s41467-017-01803-xopenalex-snapshot
The microbiota protects against respiratory infection via GM-CSF signaling
inferredcites →https://doi.org/10.1038/s41467-018-05202-8openalex-snapshot
MAIT cells protect against pulmonary Legionella longbeachae infection
inferredcites →https://doi.org/10.1038/s41467-018-07207-9openalex-snapshot
MAIT cells contribute to protection against lethal influenza infection in vivo
inferredcites →https://doi.org/10.1039/c5mb00663eopenalex-snapshot
ReactomePA: an R/Bioconductor package for reactome pathway analysis and visualization
inferredcites →https://doi.org/10.1073/pnas.0506580102openalex-snapshot
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
inferredcites →https://doi.org/10.1073/pnas.1302799110openalex-snapshot
MAIT cells are critical for optimal mucosal immune responses during in vivo pulmonary bacterial infection
inferredcites →https://doi.org/10.1073/pnas.1610750113openalex-snapshot
Human mucosal-associated invariant T cells contribute to antiviral influenza immunity via IL-18–dependent activation
inferredcites →https://doi.org/10.1074/jbc.r115.685990openalex-snapshot
Recognition of Vitamin B Precursors and Byproducts by Mucosal Associated Invariant T Cells
inferredcites →https://doi.org/10.1084/jem.178.1.1openalex-snapshot
Analysis of T cell antigen receptor (TCR) expression by human peripheral blood CD4-8- alpha/beta T cells demonstrates preferential use of several V beta genes and an invariant TCR alpha chain.
inferredcites →https://doi.org/10.1084/jem.189.12.1907openalex-snapshot
An Invariant T Cell Receptor α Chain Defines a Novel TAP-independent Major Histocompatibility Complex Class Ib–restricted α/β T Cell Subpopulation in Mammals
inferredcites →https://doi.org/10.1084/jem.20130958openalex-snapshot
Antigen-loaded MR1 tetramers define T cell receptor heterogeneity in mucosal-associated invariant T cells
inferredcites →https://doi.org/10.1084/jem.20140484openalex-snapshot
A molecular basis underpinning the T cell receptor heterogeneity of mucosal-associated invariant T cells
inferredcites →https://doi.org/10.1084/jem.20142110openalex-snapshot
Identification of phenotypically and functionally heterogeneous mouse mucosal-associated invariant T cells using MR1 tetramers
inferredcites →https://doi.org/10.1084/jem.20160637openalex-snapshot
MAIT cells promote inflammatory monocyte differentiation into dendritic cells during pulmonary intracellular infection
inferredcites →https://doi.org/10.1093/bioinformatics/btp616openalex-snapshot
edgeR : a Bioconductor package for differential expression analysis of digital gene expression data
inferredcites →https://doi.org/10.1093/bioinformatics/bts034openalex-snapshot
The sva package for removing batch effects and other unwanted variation in high-throughput experiments
inferredcites →https://doi.org/10.1093/bioinformatics/bts635openalex-snapshot
STAR: ultrafast universal RNA-seq aligner
inferredcites →https://doi.org/10.1093/nar/27.1.29openalex-snapshot
KEGG: Kyoto Encyclopedia of Genes and Genomes
inferredcites →https://doi.org/10.1093/nar/28.1.27openalex-snapshot
KEGG: Kyoto Encyclopedia of Genes and Genomes
inferredcites →https://doi.org/10.1093/nar/gkq1237openalex-snapshot
Entrez Gene: gene-centered information at NCBI
inferredcites →https://doi.org/10.1093/nar/gkt214openalex-snapshot
The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote
inferredcites →https://doi.org/10.1093/nar/gkv1351openalex-snapshot
The Reactome pathway Knowledgebase
inferredcites →https://doi.org/10.1093/nar/gkx1132openalex-snapshot
The Reactome Pathway Knowledgebase
inferredcites →https://doi.org/10.1146/annurev-immunol-032414-112123openalex-snapshot
Interleukin-22: Immunobiology and Pathology
inferredcites →https://doi.org/10.1146/annurev-immunol-032713-120216openalex-snapshot
γδ T Cells: First Line of Defense and Beyond
inferredcites →https://doi.org/10.1172/jci33194openalex-snapshot
IL-22 ameliorates intestinal inflammation in a mouse model of ulcerative colitis
inferredcites →https://doi.org/10.1172/jci41344openalex-snapshot
IL-15 triggers an antiapoptotic pathway in human intraepithelial lymphocytes that is a potential new target in celiac disease–associated inflammation and lymphomagenesis
inferredcites →https://doi.org/10.1182/blood-2010-08-303339openalex-snapshot
Human MAIT cells are xenobiotic-resistant, tissue-targeted, CD161hi IL-17–secreting T cells
inferredcites →https://doi.org/10.1186/gb-2004-5-10-r80openalex-snapshot
Bioconductor: open software development for computational biology and bioinformatics
inferredcites →https://doi.org/10.1371/journal.ppat.1003681openalex-snapshot
MAIT Cells Detect and Efficiently Lyse Bacterially-Infected Epithelial Cells
inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot
R: A Language and Environment for Statistical Computing
inferredcites →https://doi.org/10.3389/fimmu.2018.00486openalex-snapshot
CD161 Defines a Functionally Distinct Subset of Pro-Inflammatory Natural Killer Cells
inferredcites →https://doi.org/10.4049/jimmunol.0902733openalex-snapshot
Epidermal T Cells and Wound Healing
inferredcites →https://doi.org/10.4049/jimmunol.1200256openalex-snapshot
Leukemia Inhibitory Factor Signaling Is Required for Lung Protection during Pneumonia
inferredcites →https://doi.org/10.4049/jimmunol.1400722openalex-snapshot
Antigen-Dependent versus -Independent Activation of Invariant NKT Cells during Infection
inferredcites →https://doi.org/10.4049/jimmunol.1600643openalex-snapshot
Lineage-Specific Effector Signatures of Invariant NKT Cells Are Shared amongst γδ T, Innate Lymphoid, and Th Cells

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/eji.201948279openalex-snapshot
Type I interferons are important co‐stimulatory signals during T cell receptor mediated human MAIT cell activation
inferred← citeshttps://doi.org/10.1016/j.celrep.2019.08.050openalex-snapshot
TCR and Inflammatory Signals Tune Human MAIT Cells to Exert Specific Tissue Repair and Effector Functions
inferred← citeshttps://doi.org/10.1016/j.envint.2021.106985openalex-snapshot
MAIT cell activation is reduced by direct and microbiota-mediated exposure to bisphenols
inferred← citeshttps://doi.org/10.1101/600189openalex-snapshot
Transcriptional analysis defines TCR and cytokine-stimulated MAIT cells as rapid polyfunctional effector T cells that can coordinate the immune response
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