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Successful exome capture and sequencing in lemurs using human baits

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/ajp.1058openalex-snapshot

Characterization and screening of microsatellite loci in a wild lemur population (Propithecus verreauxi verreauxi)

inferredcites →https://doi.org/10.1002/ajp.20054openalex-snapshot

Use of primates in research: A global overview

inferredcites →https://doi.org/10.1002/ajpa.10021openalex-snapshot

A proper study for mankind: Analogies from the Papionin monkeys and their implications for human evolution

inferredcites →https://doi.org/10.1007/s10764-012-9600-9openalex-snapshot

A Papionin Multilevel Society as a Model for Hominin Social Evolution

inferredcites →https://doi.org/10.1016/0888-7543(88)90007-9openalex-snapshot

Genomic mapping by fingerprinting random clones: A mathematical analysis

inferredcites →https://doi.org/10.1016/j.tig.2013.07.006openalex-snapshot

Finding the lost treasures in exome sequencing data

inferredcites →https://doi.org/10.1016/j.tree.2013.09.008openalex-snapshot

Genome sequencing and population genomics in non-model organisms

inferredcites →https://doi.org/10.1017/s0952836902000468openalex-snapshot

Life in the slow lane? Demography and life histories of male and female sifaka (Propithecus verreauxi verreauxi)

inferredcites →https://doi.org/10.1038/nature09327openalex-snapshot

Whole-exome sequencing identifies recessive WDR62 mutations in severe brain malformations

inferredcites →https://doi.org/10.1038/nature09687openalex-snapshot

Comparative and demographic analysis of orang-utan genomes

inferredcites →https://doi.org/10.1038/nature12228openalex-snapshot

Great ape genetic diversity and population history

inferredcites →https://doi.org/10.1038/nature13679openalex-snapshot

Gibbon genome and the fast karyotype evolution of small apes

inferredcites →https://doi.org/10.1038/nbt.1523openalex-snapshot

Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing

inferredcites →https://doi.org/10.1038/nbt.1975openalex-snapshot

Performance comparison of exome DNA sequencing technologies

inferredcites →https://doi.org/10.1038/ng.499openalex-snapshot

Exome sequencing identifies the cause of a mendelian disorder

inferredcites →https://doi.org/10.1038/nrg.2015.28openalex-snapshot

Harnessing the power of RADseq for ecological and evolutionary genomics

inferredcites →https://doi.org/10.1038/nrg.2016.49openalex-snapshot

Coming of age: ten years of next-generation sequencing technologies

inferredcites →https://doi.org/10.1038/nrg3031openalex-snapshot

Exome sequencing as a tool for Mendelian disease gene discovery

inferredcites →https://doi.org/10.1038/nrg3642openalex-snapshot

Sequencing depth and coverage: key considerations in genomic analyses

inferredcites →https://doi.org/10.1038/nrg3707openalex-snapshot

Comparative primate genomics: emerging patterns of genome content and dynamics

inferredcites →https://doi.org/10.1038/s41592-018-0046-7openalex-snapshot

Bioconda: sustainable and comprehensive software distribution for the life sciences

inferredcites →https://doi.org/10.1073/pnas.1106877109openalex-snapshot

Extensive X-linked adaptive evolution in central chimpanzees

inferredcites →https://doi.org/10.1073/pnas.1525530113openalex-snapshot

Dopamine pathway is highly diverged in primate species that differ markedly in social behavior

inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot

The Sequence Alignment/Map format and SAMtools

inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot

BEDTools: a flexible suite of utilities for comparing genomic features

inferredcites →https://doi.org/10.1093/bioinformatics/btr509openalex-snapshot

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

inferredcites →https://doi.org/10.1093/bioinformatics/bts277openalex-snapshot

BEDOPS: high-performance genomic feature operations

inferredcites →https://doi.org/10.1093/bioinformatics/bts480openalex-snapshot

Snakemake—a scalable bioinformatics workflow engine

inferredcites →https://doi.org/10.1093/bioinformatics/btu314openalex-snapshot

SAMBLASTER : fast duplicate marking and structural variant read extraction

inferredcites →https://doi.org/10.1093/bioinformatics/btw354openalex-snapshot

MultiQC: summarize analysis results for multiple tools and samples in a single report

inferredcites →https://doi.org/10.1093/bioinformatics/btx057openalex-snapshot

cyvcf2: fast, flexible variant analysis with Python

inferredcites →https://doi.org/10.1093/gbe/evv058openalex-snapshot

Inference of Purifying and Positive Selection in Three Subspecies of Chimpanzees (Pan troglodytes) from Exome Sequencing

inferredcites →https://doi.org/10.1093/molbev/msv007openalex-snapshot

Long-Term Balancing Selection in LAD1 Maintains a Missense Trans-Species Polymorphism in Humans, Chimpanzees, and Bonobos

inferredcites →https://doi.org/10.1093/sysbio/syw035openalex-snapshot

Phylogeny and Divergence Times of Lemurs Inferred with Recent and Ancient Fossils in the Tree

inferredcites →https://doi.org/10.1093/sysbio/syy001openalex-snapshot

Using Phylogenomic Data to Explore the Effects of Relaxed Clocks and Calibration Strategies on Divergence Time Estimation: Primates as a Test Case

inferredcites →https://doi.org/10.1101/201178openalex-snapshot

Scaling accurate genetic variant discovery to tens of thousands of samples

inferredcites →https://doi.org/10.1101/gr.082016.108openalex-snapshot

Copy number variation and evolution in humans and chimpanzees

inferredcites →https://doi.org/10.1101/gr.10.8.1065openalex-snapshot

A Chimpanzee Genome Project Is a Biomedical Imperative: Figure B1.

inferredcites →https://doi.org/10.1101/gr.107524.110openalex-snapshot

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

inferredcites →https://doi.org/10.1101/gr.121327.111openalex-snapshot

Trans genomic capture and sequencing of primate exomes reveals new targets of positive selection

inferredcites →https://doi.org/10.1111/1755-0998.12635openalex-snapshot

Breaking RAD: an evaluation of the utility of restriction site‐associated DNA sequencing for genome scans of adaptation

inferredcites →https://doi.org/10.1111/mec.12276openalex-snapshot

RAD seq underestimates diversity and introduces genealogical biases due to nonrandom haplotype sampling

inferredcites →https://doi.org/10.1111/mec.13304openalex-snapshot

Targeted capture in evolutionary and ecological genomics

inferredcites →https://doi.org/10.1111/mec.13436openalex-snapshot

Resource base influences genome‐wide DNA methylation levels in wild baboons (Papio cynocephalus)

inferredcites →https://doi.org/10.1111/mec.13684openalex-snapshot

Genomewide ancestry and divergence patterns from low‐coverage sequencing data reveal a complex history of admixture in wild baboons

inferredcites →https://doi.org/10.1126/science.1139247openalex-snapshot

Evolutionary and Biomedical Insights from the Rhesus Macaque Genome

inferredcites →https://doi.org/10.1126/science.aag2602openalex-snapshot

Chimpanzee genomic diversity reveals ancient admixture with bonobos

inferredcites →https://doi.org/10.1186/1471-2105-6-245openalex-snapshot

Extension of Lander-Waterman theory for sequencing filtered DNA libraries

inferredcites →https://doi.org/10.1186/gb-2011-12-9-r87openalex-snapshot

Expanding whole exome resequencing into non-human primates

inferredcites →https://doi.org/10.1186/gb-2011-12-9-r94openalex-snapshot

Comparison of solution-based exome capture methods for next generation sequencing

inferredcites →https://doi.org/10.1186/s13059-016-0974-4openalex-snapshot

The Ensembl Variant Effect Predictor

inferredcites →https://doi.org/10.1371/journal.pone.0003376openalex-snapshot

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

inferredcites →https://doi.org/10.1371/journal.pone.0033394openalex-snapshot

Inferring Phylogenies from RAD Sequence Data

inferredcites →https://doi.org/10.1371/journal.pone.0040637openalex-snapshot

An Effort to Use Human-Based Exome Capture Methods to Analyze Chimpanzee and Macaque Exomes

inferredcites →https://doi.org/10.1371/journal.pone.0049521openalex-snapshot

Macroevolutionary Dynamics and Historical Biogeography of Primate Diversification Inferred from a Species Supermatrix

inferredcites →https://doi.org/10.1534/genetics.116.187492openalex-snapshot

Efficient Genome-Wide Sequencing and Low-Coverage Pedigree Analysis from Noninvasively Collected Samples

inferredcites →https://doi.org/10.21105/joss.00168openalex-snapshot

bíogo/hts: high throughput sequence handling for the Go language

inferredcites →https://doi.org/10.2307/2803365openalex-snapshot

The Evolution of Human Behavior: Primate Models.

inferredcites →https://doi.org/10.48550/arxiv.1207.3907openalex-snapshot

Haplotype-based variant detection from short-read sequencing

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1111/1755-0998.13260openalex-snapshot

Urine as a high‐quality source of host genomic DNA from wild populations

inferred← citeshttps://doi.org/10.1186/s12864-020-07278-3openalex-snapshot

Genomic targets for high-resolution inference of kinship, ancestry and disease susceptibility in orang-utans (genus: Pongo)

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