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Using Phylogenomic Data to Explore the Effects of Relaxed Clocks and Calibration Strategies on Divergence Time Estimation: Primates as a Test Case

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Outgoing claims: the papers this work cites, builds on, or argues with.

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Evolutionary Biology of the New World Monkeys and Continental Drift

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Dating of the human-ape splitting by a molecular clock of mitochondrial DNA

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Miocene lorisid primates from the Pakistan Siwaliks

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Cosmogenic nuclide dating of Sahelanthropus tchadensis and Australopithecus bahrelghazali : Mio-Pliocene hominids from Chad

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Nine exceptional radiations plus high turnover explain species diversity in jawed vertebrates

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The fossilized birth–death process for coherent calibration of divergence-time estimates

inferredcites →https://doi.org/10.1073/pnas.1421707112openalex-snapshot

Oldest known euarchontan tarsals and affinities of Paleocene Purgatorius to Primates

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Divergence Time and Evolutionary Rate Estimation with Multilocus Data

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Computing Bayes Factors Using Thermodynamic Integration

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Inferring Speciation Times under an Episodic Molecular Clock

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Assessing Calibration Uncertainty in Molecular Dating: The Assignment of Fossils to Alternative Calibration Points

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A Simple Method for Bracketing Absolute Divergence Times on Molecular Phylogenies Using Multiple Fossil Calibration Points

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RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

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Accuracy of Rate Estimation Using Relaxed-Clock Models with a Critical Focus on the Early Metazoan Radiation

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Approximate Likelihood Calculation on a Phylogeny for Bayesian Estimation of Divergence Times

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A Dirichlet Process Prior for Estimating Lineage-Specific Substitution Rates

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Improving the Accuracy of Demographic and Molecular Clock Model Comparison While Accommodating Phylogenetic Uncertainty

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Accurate Model Selection of Relaxed Molecular Clocks in Bayesian Phylogenetics

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350 My of Mitochondrial Genome Stasis in Mosses, an Early Land Plant Lineage

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Improved Calibration of the Human Mitochondrial Clock Using Ancient Genomes

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Calibrating And Constraining Molecular Clocks

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Performance of a Divergence Time Estimation Method under a Probabilistic Model of Rate Evolution

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A Nonparametric Approach to Estimating Divergence Times in the Absence of Rate Constancy

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Bayesian phylogenetic inference using DNA sequences: a Markov Chain Monte Carlo Method

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A molecular view of primate phylogeny and important systematic and evolutionary questions.

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Accounting for Calibration Uncertainty in Phylogenetic Estimation of Evolutionary Divergence Times

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The Impact of the Representation of Fossil Calibrations on Bayesian Estimation of Species Divergence Times

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Evaluation of Bayesian Models of Substitution Rate Evolution—Parental Guidance versus Mutual Independence

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Integrating Fossil Preservation Biases in the Selection of Calibrations for Molecular Divergence Time Estimation

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The Impact of the Rate Prior on Bayesian Estimation of Divergence Times with Multiple Loci

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Characterization of the Uncertainty of Divergence Time Estimation under Relaxed Molecular Clock Models Using Multiple Loci

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Total-Evidence Dating under the Fossilized Birth–Death Process

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Efficient Bayesian Species Tree Inference under the Multispecies Coalescent

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An examination of phylogenetic models of substitution rate variation among lineages

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Phylogenomic datasets provide both precision and accuracy in estimating the timescale of placental mammal phylogeny

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A composite estimate of primate phylogeny

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A mixed relaxed clock model

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Conceptual issues in Bayesian divergence time estimation

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Bayesian Data Analysis

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PHYLETIC DIVERGENCE DATES OF HOMINOID PRIMATES: A COMPARISON OF FOSSIL AND MOLECULAR DATA

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NON-LINEAR MACROMOLECULAR EVOLUTION AND THE MOLECULAR CLOCK

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The unbearable uncertainty of Bayesian divergence time estimation

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Reanalysis of the biogeographical hypothesis of range expansion between robust and gracile capuchin monkeys

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Molecular‐clock methods for estimating evolutionary rates and timescales

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The Placental Mammal Ancestor and the Post–K-Pg Radiation of Placentals

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Immunological Time Scale for Hominid Evolution

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Hominid Phylogeny and Immunology: A Critical Appraisal

inferredcites →https://doi.org/10.1126/science.176.4036.803openalex-snapshot

Primate Phylogeny and Immunological Distance

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Purgatorius , an Early Paromomyid Primate (Mammalia)

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Response : Do Albumin Clocks Run on Time?

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Do Albumin Clocks Run on Time?

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Succession of faunas of vertebrates from the Upper Paleocene and the Early Eocene in the Ouarzazate basin (Morocco). Geological context, biostratigraphical and paleogeographical scope

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A Mammalian Fauna from the Late Oligocene of Northwestern Kenya

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Bayesian Data Analysis

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Relaxed Phylogenetics and Dating with Confidence

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A Molecular Phylogeny of Living Primates

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Macroevolutionary Dynamics and Historical Biogeography of Primate Diversification Inferred from a Species Supermatrix

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A Mitogenomic Phylogeny of Living Primates

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2. Chronology of Paleogene Mammal Localities

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Chronology of Paleogene Mammal Localities

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Later Tertiary Lorisiformes

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Cercopithecoidea

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Dendropithecoidea, Proconsuloidea, and Hominoidea

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Hominini

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A new, early Puercan (earliest Paleocene) species ofPurgatorius(Plesiadapiformes, Primates) from Saskatchewan, Canada

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Nouvelles données sur les mammifères du Thanétien et de l'Yprésien du bassin d'Ouarzazate (Maroc) et leur contexte stratigraphique.

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PURGATORIUS (PLESIADAPIFORMES, PRIMATES?, MAMMALIA), A PALEOCENE IMMIGRANT INTO NORTHEASTERN MONTANA: STRATIGRAPHIC OCCURRENCES AND INCISOR PROPORTIONS

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VI: Prosimian primates

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The monkey's voyage: how improbable journeys shaped the history of life

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2.3. Numerical Age Control for the Miocene-Pliocene Succession at Lothagam, a Hominoid-bearing Sequence in the Northern Kenya Rift

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A comparative study of gut microbiomes in captive nocturnal strepsirrhines

inferred← citeshttps://doi.org/10.1002/ajpa.23621openalex-snapshot

Reevaluating cases of trait‐dependent diversification in primates

inferred← citeshttps://doi.org/10.1002/ajpa.23975openalex-snapshot

Taxonomic variation in the supraorbital region of catarrhine primates

inferred← citeshttps://doi.org/10.1002/ajpa.24622openalex-snapshot

Variation in macroevolutionary dynamics among extant primates

inferred← citeshttps://doi.org/10.1002/ajpa.70009openalex-snapshot

Primate Behavior and the Importance of Comparative Studies in Biological Anthropology

inferred← citeshttps://doi.org/10.1002/ece3.10827openalex-snapshot

Geologically calibrated mammalian tree and its correlation with global events, including the emergence of humans

inferred← citeshttps://doi.org/10.1002/ece3.71471openalex-snapshot

Supermatrix Phylogenetic Tree of Passerine Birds From the Indo‐Australian Archipelago Highlights Contrasting Histories of Regional Endemism

inferred← citeshttps://doi.org/10.1002/evan.21588openalex-snapshot

Tropical heterothermy is “cool”: The expression of daily torpor and hibernation in primates

inferred← citeshttps://doi.org/10.1002/evan.21940openalex-snapshot

Rocks and clocks revised: New promises and challenges in dating the primate tree of life

inferred← citeshttps://doi.org/10.1002/jmor.70164openalex-snapshot

Evolutionary Signal and Development of the Foramen Dorsum Sellae (Nov.) Across Primates

inferred← citeshttps://doi.org/10.1007/978-1-0716-2691-7_1openalex-snapshot

Dating Microbial Evolution with MCMCtree

inferred← citeshttps://doi.org/10.1007/978-1-0716-2691-7_2openalex-snapshot

A Computational Protocol for Dating the Evolution of Cyanobacteria

inferred← citeshttps://doi.org/10.1007/978-1-0716-2691-7_5openalex-snapshot

Estimating the Divergence Times of Alphaproteobacteria Based on Mitochondrial Endosymbiosis and Eukaryotic Fossils

inferred← citeshttps://doi.org/10.1007/978-1-4939-9074-0_10openalex-snapshot

Bayesian Molecular Clock Dating Using Genome-Scale Datasets

inferred← citeshttps://doi.org/10.1007/978-3-030-00281-7_6openalex-snapshot

Mammalian Phylogenetics: A Short Overview of Recent Advances

inferred← citeshttps://doi.org/10.1007/978-3-030-60181-2_12openalex-snapshot

Efficient Methods for Dating Evolutionary Divergences

inferred← citeshttps://doi.org/10.1007/978-3-030-60181-2_13openalex-snapshot

Bayesian Phylogenomic Dating

inferred← citeshttps://doi.org/10.1007/978-3-031-13555-2_3openalex-snapshot

Phylogenetics and Biogeography of Owl Monkeys (Aotus): The Molecular Evidence

inferred← citeshttps://doi.org/10.1007/978-3-319-65038-8_6-1openalex-snapshot

Mammalian Phylogenetics: A Short Overview of Recent Advances

inferred← citeshttps://doi.org/10.1007/s10329-021-00959-xopenalex-snapshot

Phylogenetic relationships, population demography, and species delimitation of the Alouatta belzebul species complex (Atelidae: Alouattinae)

inferred← citeshttps://doi.org/10.1007/s10329-026-01269-wopenalex-snapshot

Parting ways: Pan-Homo divergence revisited

inferred← citeshttps://doi.org/10.1007/s10764-021-00257-9openalex-snapshot

Gut Microbial Diversity and Ecological Specialization in Four Sympatric Lemur Species Under Lean Conditions

inferred← citeshttps://doi.org/10.1007/s12110-022-09429-9openalex-snapshot

The Biological Roots of Music and Dance

inferred← citeshttps://doi.org/10.1016/b978-0-12-815809-8.00010-2openalex-snapshot

The Fossil Record

inferred← citeshttps://doi.org/10.1016/j.celrep.2025.115890openalex-snapshot

Phylotranscriptomics provides insights into the Mesoproterozoic-Neoproterozoic origin and diversification of green algae Trebouxiophyceae

inferred← citeshttps://doi.org/10.1016/j.earscirev.2024.104767openalex-snapshot

A time-calibrated ‘Tree of Life’ of aquatic insects for knitting historical patterns of evolution and measuring extant phylogenetic biodiversity across the world

inferred← citeshttps://doi.org/10.1016/j.jhevol.2019.05.001openalex-snapshot

Macroevolutionary effects on primate trophic evolution and their implications for reconstructing primate origins

inferred← citeshttps://doi.org/10.1016/j.jhevol.2019.05.016openalex-snapshot

Parvimico materdei gen. et sp. nov.: A new platyrrhine from the Early Miocene of the Amazon Basin, Peru

inferred← citeshttps://doi.org/10.1016/j.jhevol.2021.102949openalex-snapshot

The Pan social brain: An evolutionary history of neurochemical receptor genes and their potential impact on sociocognitive differences

inferred← citeshttps://doi.org/10.1016/j.jhevol.2022.103293openalex-snapshot

Total evidence phylogeny of platyrrhine primates and a comparison of undated and tip-dating approaches

inferred← citeshttps://doi.org/10.1016/j.jhevol.2026.103831openalex-snapshot

A fossil galagid (Primates: Galagidae) from the Pliocene site of Woranso-Mille, Ethiopia

inferred← citeshttps://doi.org/10.1016/j.neubiorev.2022.104924openalex-snapshot

Towards integrating joint action research: Developmental and evolutionary perspectives on co-representation

inferred← citeshttps://doi.org/10.1016/j.psj.2025.105503openalex-snapshot

Cytoskeletal signaling as a shared pathway for convergent genetic mechanisms underlying loss of flight in birds

inferred← citeshttps://doi.org/10.1016/j.tig.2020.06.002openalex-snapshot

Molecular Clocks without Rocks: New Solutions for Old Problems

inferred← citeshttps://doi.org/10.1016/j.tree.2019.01.017openalex-snapshot

Six Impossible Things before Breakfast: Assumptions, Models, and Belief in Molecular Dating

inferred← citeshttps://doi.org/10.1016/j.ympev.2019.02.013openalex-snapshot

Reconstructing evolution at the community level: A case study on Mediterranean amphibians

inferred← citeshttps://doi.org/10.1016/j.ympev.2020.107061openalex-snapshot

A phylogeny for the Drosophila montium species group: A model clade for comparative analyses

inferred← citeshttps://doi.org/10.1016/j.ympev.2021.107177openalex-snapshot

Plastome-based phylogenomics elucidate relationships in rare Isoëtes species groups from the Neotropics

inferred← citeshttps://doi.org/10.1016/j.ympev.2022.107620openalex-snapshot

Comprehensive taxon sampling and vetted fossils help clarify the time tree of shorebirds (Aves, Charadriiformes)

inferred← citeshttps://doi.org/10.1016/j.ympev.2023.107812openalex-snapshot

Australia’s hidden radiation: Phylogenomics analysis reveals rapid Miocene radiation of blindsnakes

inferred← citeshttps://doi.org/10.1016/j.ympev.2023.107867openalex-snapshot

A hybrid-capture approach to reconstruct the phylogeny of Scleractinia (Cnidaria: Hexacorallia)

inferred← citeshttps://doi.org/10.1016/j.ympev.2024.108047openalex-snapshot

Phylogenomics of Afrotherian mammals and improved resolution of extant Paenungulata

inferred← citeshttps://doi.org/10.1016/j.ympev.2024.108197openalex-snapshot

Reticulate evolution: Detection and utility in the phylogenomics era

inferred← citeshttps://doi.org/10.1016/j.ympev.2025.108342openalex-snapshot

Explosion of goby fish diversity at the Eocene-Oligocene transition

inferred← citeshttps://doi.org/10.1016/j.ympev.2026.108676openalex-snapshot

Phylogenomic assessment of microhylid frogs reveals widespread taxonomic confusion in the Asterophryinae and establishes the timing of diversification in Australia

inferred← citeshttps://doi.org/10.1016/j.ympev.2026.108699openalex-snapshot

Phylogenomics and morphological evidence reveal a new genus Callibractia gen. Nov. (Apiaceae, Apioideae), a distinct alpine lineage of Sino-Himalaya shaped by uplift of the Pan-Tibetan Highlands

inferred← citeshttps://doi.org/10.1021/acsomega.0c01014openalex-snapshot

Development and Verification of an Economical Method of Custom Target Library Construction

inferred← citeshttps://doi.org/10.1037/com0000315openalex-snapshot

Primate origins of corepresentation and cooperative flexibility: A comparative study with common marmosets (Callithrix jacchus), brown capuchins (Sapajus apella), and Tonkean macaques (Macaca tonkeana).

inferred← citeshttps://doi.org/10.1038/s41396-019-0551-4openalex-snapshot

Biodiversity of protists and nematodes in the wild nonhuman primate gut

inferred← citeshttps://doi.org/10.1038/s41437-019-0260-9openalex-snapshot

Conservation genomic analysis reveals ancient introgression and declining levels of genetic diversity in Madagascar’s hibernating dwarf lemurs

inferred← citeshttps://doi.org/10.1038/s41437-021-00446-5openalex-snapshot

Pedigree-based and phylogenetic methods support surprising patterns of mutation rate and spectrum in the gray mouse lemur

inferred← citeshttps://doi.org/10.1038/s41467-018-08139-0openalex-snapshot

The conservation value of human-modified landscapes for the world’s primates

inferred← citeshttps://doi.org/10.1038/s41467-023-41764-yopenalex-snapshot

Phylogenomics reveals the history of host use in mosquitoes

inferred← citeshttps://doi.org/10.1038/s41467-025-57687-9openalex-snapshot

New insights on angiosperm crown age based on Bayesian node dating and skyline fossilized birth-death approaches

inferred← citeshttps://doi.org/10.1038/s41559-021-01431-1openalex-snapshot

Divergence-time estimates for hominins provide insight into encephalization and body mass trends in human evolution

inferred← citeshttps://doi.org/10.1038/s41559-024-02547-wopenalex-snapshot

Integrative taxonomy clarifies the evolution of a cryptic primate clade

inferred← citeshttps://doi.org/10.1038/s41559-024-02596-1openalex-snapshot

Ecological and anthropogenic effects on the genomic diversity of lemurs in Madagascar

inferred← citeshttps://doi.org/10.1038/s41586-021-04341-1openalex-snapshot

A species-level timeline of mammal evolution integrating phylogenomic data

inferred← citeshttps://doi.org/10.1038/s41598-021-96543-wopenalex-snapshot

Cochlear shape distinguishes southern African early hominin taxa with unique auditory ecologies

inferred← citeshttps://doi.org/10.1038/s41598-022-16734-xopenalex-snapshot

Skull variation in Afro-Eurasian monkeys results from both adaptive and non-adaptive evolutionary processes

inferred← citeshttps://doi.org/10.1038/s42003-022-03375-zopenalex-snapshot

Pervasive male-biased expression throughout the germline-specific regions of the sea lamprey genome supports key roles in sex differentiation and spermatogenesis

inferred← citeshttps://doi.org/10.1042/bst20180186openalex-snapshot

The molecular clock and evolutionary timescales

inferred← citeshttps://doi.org/10.1073/pnas.2105956118openalex-snapshot

An Early Oligocene age for the oldest known monkeys and rodents of South America

inferred← citeshttps://doi.org/10.1093/bioinformatics/btab307openalex-snapshot

Data-driven speciation tree prior for better species divergence times in calibration-poor molecular phylogenies

inferred← citeshttps://doi.org/10.1093/evolinnean/kzaf017openalex-snapshot

tbea : tools for pre- and post-processing in Bayesian evolutionary analyses

inferred← citeshttps://doi.org/10.1093/gbe/evad097openalex-snapshot

Rapid Evolution of the Embryonically Expressed Homeobox GeneLEUTXwithin Primates

inferred← citeshttps://doi.org/10.1093/gbe/evaf086openalex-snapshot

Chromosome-Level Genome Assembly and Annotation of the Amur Rat Snake Elaphe schrenckii

inferred← citeshttps://doi.org/10.1093/gbe/evz200openalex-snapshot

Comparative Genomic Analysis of the Pheromone Receptor Class 1 Family (V1R) Reveals Extreme Complexity in Mouse Lemurs (Genus, Microcebus) and a Chromosomal Hotspot across Mammals

inferred← citeshttps://doi.org/10.1093/ismeco/ycaf210openalex-snapshot

The ecological diversification of flavobacteria: linking habitat transitions to Proterozoic supercontinent cycles

inferred← citeshttps://doi.org/10.1093/jmammal/gyz151openalex-snapshot

The frugivorous insectivores? Functional morphological analysis of molar topography for inferring diet in extant treeshrews (Scandentia)

inferred← citeshttps://doi.org/10.1093/molbev/msab026openalex-snapshot

Genome-Scale Profiling Reveals Noncoding Loci Carry Higher Proportions of Concordant Data

inferred← citeshttps://doi.org/10.1093/molbev/msab072openalex-snapshot

Discovery of Novel Herpes Simplexviruses in Wild Gorillas, Bonobos, and Chimpanzees Supports Zoonotic Origin of HSV-2

inferred← citeshttps://doi.org/10.1093/molbev/msac085openalex-snapshot

Lifestyle Transitions in Fusarioid Fungi are Frequent and Lack Clear Genomic Signatures

inferred← citeshttps://doi.org/10.1093/molbev/msac170openalex-snapshot

Phylogenomic Evidence for the Origin of Obligate Anaerobic Anammox Bacteria Around the Great Oxidation Event

inferred← citeshttps://doi.org/10.1093/molbev/msac236openalex-snapshot

Taming the Selection of Optimal Substitution Models in Phylogenomics by Site Subsampling and Upsampling

inferred← citeshttps://doi.org/10.1093/molbev/msae096openalex-snapshot

Dating Ammonia-Oxidizing Bacteria with Abundant Eukaryotic Fossils

inferred← citeshttps://doi.org/10.1093/molbev/msag174openalex-snapshot

Convergent elevation of mitochondrial proton leakage improves thermogenesis in honeybees

inferred← citeshttps://doi.org/10.1093/molbev/msz014openalex-snapshot

A Machine Learning Method for Detecting Autocorrelation of Evolutionary Rates in Large Phylogenies

inferred← citeshttps://doi.org/10.1093/molbev/msz213openalex-snapshot

The Genome of the Endangered Dryas Monkey Provides New Insights into the Evolutionary History of the Vervets

inferred← citeshttps://doi.org/10.1093/oso/9780192882578.003.0009openalex-snapshot

Adaptive Memory, Primates, and Human Evolution

inferred← citeshttps://doi.org/10.1093/sysbio/syaa053openalex-snapshot

Cryptic Patterns of Speciation in Cryptic Primates: Microendemic Mouse Lemurs and the Multispecies Coalescent.

inferred← citeshttps://doi.org/10.1093/sysbio/syaa101openalex-snapshot

Integrating Sequence Capture and Restriction Site-Associated DNA Sequencing to Resolve Recent Radiations of Pelagic Seabirds

inferred← citeshttps://doi.org/10.1093/sysbio/syad039openalex-snapshot

Scalable Bayesian Divergence Time Estimation With Ratio Transformations

inferred← citeshttps://doi.org/10.1093/sysbio/syad048openalex-snapshot

Populating a Continent: Phylogenomics Reveal the Timing of Australian Frog Diversification

inferred← citeshttps://doi.org/10.1093/sysbio/syae002openalex-snapshot

Dating in the Dark: Elevated Substitution Rates in Cave Cockroaches (Blattodea: Nocticolidae) Have Negative Impacts on Molecular Date Estimates

inferred← citeshttps://doi.org/10.1093/sysbio/syae066openalex-snapshot

Bayesian Selection of Relaxed-Clock Models: Distinguishing between Independent and Autocorrelated Rates

inferred← citeshttps://doi.org/10.1093/sysbio/syae071openalex-snapshot

Dating the Bacterial Tree of Life Based on Ancient Symbiosis

inferred← citeshttps://doi.org/10.1093/sysbio/syaf050openalex-snapshot

Practical Guide and Review of Fossil Tip-Dating in Phylogenetics

inferred← citeshttps://doi.org/10.1093/sysbio/syaf053openalex-snapshot

Selecting a Window Size for Phylogenomic Analyses of Whole Genome Alignments Using AIC

inferred← citeshttps://doi.org/10.1093/sysbio/syaf055openalex-snapshot

But the Clock, Tick-Tock: An Empirical Case Study Highlights the Preeminence of Relaxed Clock Models in Total-Evidence Dating

inferred← citeshttps://doi.org/10.1093/sysbio/syag058openalex-snapshot

Bayesian Divergence Time Analyses of Ruminantia (Artiodactyla, Mammalia): An Example of the Impact of Fossil Taxon Sampling on the Morphological Clock

inferred← citeshttps://doi.org/10.1093/sysbio/syy076openalex-snapshot

True Homoplasy of Retrotransposon Insertions in Primates

inferred← citeshttps://doi.org/10.1093/sysbio/syz015openalex-snapshot

Bayesian Estimation of Species Divergence Times Using Correlated Quantitative Characters

inferred← citeshttps://doi.org/10.1093/sysbio/syz032openalex-snapshot

Accounting for Uncertainty in the Evolutionary Timescale of Green Plants Through Clock-Partitioning and Fossil Calibration Strategies

inferred← citeshttps://doi.org/10.1093/sysbio/syz068openalex-snapshot

Phylogenomic Resolution of the Cetacean Tree of Life Using Target Sequence Capture

inferred← citeshttps://doi.org/10.1093/ve/veac117openalex-snapshot

Long-term host–pathogen evolution of endogenous beta- and gammaretroviruses in mouse lemurs with little evidence of recent retroviral introgression

inferred← citeshttps://doi.org/10.1098/rsbl.2021.0642openalex-snapshot

Small, odd and old: The mysteriousTarsius pumilusis the most basal Sulawesi tarsier

inferred← citeshttps://doi.org/10.1098/rsos.201206openalex-snapshot

Factors influencing taxonomic unevenness in scientific research: a mixed-methods case study of non-human primate genomic sequence data generation

inferred← citeshttps://doi.org/10.1098/rsos.210050openalex-snapshot

Earliest Palaeocene purgatoriids and the initial radiation of stem primates

inferred← citeshttps://doi.org/10.1098/rspb.2021.2535openalex-snapshot

Extant species fail to estimate ancestral geographical ranges at older nodes in primate phylogeny

inferred← citeshttps://doi.org/10.1098/rstb.2019.0264openalex-snapshot

Design, delivery and perception of condition-dependent chemical signals in strepsirrhine primates: implications for human olfactory communication

inferred← citeshttps://doi.org/10.1098/rstb.2019.0616openalex-snapshot

Age-associated epigenetic change in chimpanzees and humans

inferred← citeshttps://doi.org/10.1101/2020.01.10.902239openalex-snapshot

A novel phylogenetic analysis and machine learning predict pathogenicity of human mtDNA variants

inferred← citeshttps://doi.org/10.1101/2020.03.17.996207openalex-snapshot

The tempo of trophic evolution in small-bodied primates

inferred← citeshttps://doi.org/10.1101/2020.04.06.027201openalex-snapshot

Comparative analyses of two primate species diverged by more than 60 million years show different rates but similar distribution of genome-wide UV repair events

inferred← citeshttps://doi.org/10.1101/2021.07.06.451309openalex-snapshot

Molecular adaptation to folivory and the conservation implications for Madagascar’s lemurs

inferred← citeshttps://doi.org/10.1101/2021.09.24.461754openalex-snapshot

The germline-specific region of the sea lamprey genome plays a key role in spermatogenesis

inferred← citeshttps://doi.org/10.1101/2022.08.10.503388openalex-snapshot

A genomic timescale for placental mammal evolution

inferred← citeshttps://doi.org/10.1101/2023.09.06.556545openalex-snapshot

Emergence of Prochlorococcus in the Tonian oceans and the initiation of Neoproterozoic oxygenation

inferred← citeshttps://doi.org/10.1101/2024.12.13.628352openalex-snapshot

Unprecedented female mutation bias in aye-ayes

inferred← citeshttps://doi.org/10.1101/2025.02.28.640870openalex-snapshot

But the clock, tick-tock: the preeminence of relaxed clock models in total-evidence dated phylogenetics

inferred← citeshttps://doi.org/10.1101/2025.05.19.654637openalex-snapshot

Genomic Insights into Derived Dwarfism and Exudivory in a Genus ( Callithrix ) of the World’s Smallest Anthropoid Monkeys

inferred← citeshttps://doi.org/10.1101/346635openalex-snapshot

A new method for detecting autocorrelation of evolutionary rates in large phylogenies

inferred← citeshttps://doi.org/10.1101/490839openalex-snapshot

Successful exome capture and sequencing in lemurs using human baits

inferred← citeshttps://doi.org/10.1101/536656openalex-snapshot

Molecular dating for phylogenies containing a mix of populations and species

inferred← citeshttps://doi.org/10.1101/724880openalex-snapshot

Pedigree-based measurement of the de novo mutation rate in the gray mouse lemur reveals a high mutation rate, few mutations in CpG sites, and a weak sex bias

inferred← citeshttps://doi.org/10.1101/742361openalex-snapshot

Cryptic Patterns of Speciation in Cryptic Primates: Microendemic Mouse Lemurs and the Multispecies Coalescent

inferred← citeshttps://doi.org/10.1101/772558openalex-snapshot

Incorporating uncertainty is essential to macroecological inferences: Grass, grit, and the evolution of kangaroos

inferred← citeshttps://doi.org/10.1111/1755-0998.13249openalex-snapshot

Molecular dating for phylogenies containing a mix of populations and species by using Bayesian and RelTime approaches

inferred← citeshttps://doi.org/10.1111/2041-210x.14404openalex-snapshot

Chronospaces: An R package for the statistical exploration of divergence times promotes the assessment of methodological sensitivity

inferred← citeshttps://doi.org/10.1111/eva.13591openalex-snapshot

Domestication in dry‐cured meat Penicillium fungi: Convergent specific phenotypes and horizontal gene transfers without strong genetic subdivision

inferred← citeshttps://doi.org/10.1111/gbb.12582openalex-snapshot

Evolution of ASPM coding variation in apes and associations with brain structure in chimpanzees

inferred← citeshttps://doi.org/10.1111/jbi.13947openalex-snapshot

Noise does not equal bias in assessing the evolutionary history of the angiosperm flora of China: A response to Qian (2019)

inferred← citeshttps://doi.org/10.1111/jbi.15018openalex-snapshot

Phylogenetic and Biogeographic History of the Snooks (Centropomidae: Carangiformes) Spanning the Closure of the Isthmus of Panama

inferred← citeshttps://doi.org/10.1111/jse.13147openalex-snapshot

Cryptic diversity and evolutionary history of the fish species Xenotoca variata (Cyprinodontiformes: Goodeidae) in the Mexican Plateau: Implications for taxonomy and conservation

inferred← citeshttps://doi.org/10.1111/mec.16007openalex-snapshot

The challenge and promise of estimating the de novo mutation rate from whole‐genome comparisons among closely related individuals

inferred← citeshttps://doi.org/10.1111/mec.16681openalex-snapshot

Comparing different computational approaches for detecting long‐term vertical transmission in host‐associated microbiota

inferred← citeshttps://doi.org/10.1111/nph.15011openalex-snapshot

Constraining uncertainty in the timescale of angiosperm evolution and the veracity of a Cretaceous Terrestrial Revolution

inferred← citeshttps://doi.org/10.1111/syen.70018openalex-snapshot

Phylogenomics and the evolution of larval feeding habits in the blow flies (Diptera: Calliphoridae)

inferred← citeshttps://doi.org/10.1126/sciadv.abd2274openalex-snapshot

Comparative genomic analysis of sifakas ( Propithecus ) reveals selection for folivory and high heterozygosity despite endangered status

inferred← citeshttps://doi.org/10.1126/sciadv.aeg0031openalex-snapshot

Modeling the effects of climate risk on primates globally: New perspectives on conservation priorities

inferred← citeshttps://doi.org/10.1126/science.abl8189openalex-snapshot

A genomic timescale for placental mammal evolution

inferred← citeshttps://doi.org/10.1126/science.abl8621openalex-snapshot

Adaptations to a cold climate promoted social evolution in Asian colobine primates

inferred← citeshttps://doi.org/10.1126/science.abn7829openalex-snapshot

A global catalog of whole-genome diversity from 233 primate species

inferred← citeshttps://doi.org/10.1134/s2079086422050024openalex-snapshot

The Concept of the Modern Molecular Clock and Experience in Estimating Divergence Times of Eulipotyphla and Rodentia

inferred← citeshttps://doi.org/10.1146/annurev-ecolsys-102723-050400openalex-snapshot

Origin and Early Evolution of Squamates and Their Kin: From Fossils to Genomes

inferred← citeshttps://doi.org/10.1159/000552655openalex-snapshot

Phylogenetic Patterns and Genomic Correlates of Pronounced Neocortical Reduction in New World Monkeys

inferred← citeshttps://doi.org/10.1163/1568539x-bja10321openalex-snapshot

Sensory drive tested in the sister-species Microcebus griseorufus and M. murinus

inferred← citeshttps://doi.org/10.1186/s12862-019-1534-9openalex-snapshot

The effect of alignment uncertainty, substitution models and priors in building and dating the mammal tree of life

inferred← citeshttps://doi.org/10.1186/s12862-021-01798-6openalex-snapshot

Molecular and morphological clocks for estimating evolutionary divergence times

inferred← citeshttps://doi.org/10.1186/s12864-021-07533-1openalex-snapshot

Mitogenomic phylogeny of Callithrix with special focus on human transferred taxa

inferred← citeshttps://doi.org/10.1186/s12864-021-07898-3openalex-snapshot

Comparative analyses of two primate species diverged by more than 60 million years show different rates but similar distribution of genome-wide UV repair events

inferred← citeshttps://doi.org/10.1186/s12864-022-08862-5openalex-snapshot

Organellar genome comparisons of Sargassum polycystum and S. plagiophyllum (Fucales, Phaeophyceae) with other Sargassum species

inferred← citeshttps://doi.org/10.1186/s12864-022-09030-5openalex-snapshot

Assessing the relative performance of fast molecular dating methods for phylogenomic data

inferred← citeshttps://doi.org/10.1186/s12915-018-0499-2openalex-snapshot

A phylogenomic framework and timescale for comparative studies of tunicates

inferred← citeshttps://doi.org/10.1186/s12915-020-00901-5openalex-snapshot

Sphenodontian phylogeny and the impact of model choice in Bayesian morphological clock estimates of divergence times and evolutionary rates

inferred← citeshttps://doi.org/10.1186/s13023-023-02619-3openalex-snapshot

Nonhuman primate genetic models for the study of rare diseases

inferred← citeshttps://doi.org/10.12677/ojns.2021.92030openalex-snapshot

Phylogenetic Analysis of Mammalian mtDNA Sequences Based on Common Prefix Positions

inferred← citeshttps://doi.org/10.1371/journal.pbio.3003015openalex-snapshot

Unprecedented female mutation bias in the aye-aye, a highly unusual lemur from Madagascar

inferred← citeshttps://doi.org/10.1371/journal.pone.0201254openalex-snapshot

A RAD-sequencing approach to genome-wide marker discovery, genotyping, and phylogenetic inference in a diverse radiation of primates

inferred← citeshttps://doi.org/10.14302/issn.2689-4602.jes-24-4982openalex-snapshot

Rbm45 Phylogenetics, Protein Domain Conservation, and Gene Architecture in Clade Metazoa

inferred← citeshttps://doi.org/10.21203/rs.3.rs-29165/v1openalex-snapshot

Molecular and morphological clocks for estimating evolutionary divergence times

inferred← citeshttps://doi.org/10.21203/rs.3.rs-29165/v2openalex-snapshot

Molecular and morphological clocks for estimating evolutionary divergence times

inferred← citeshttps://doi.org/10.21203/rs.3.rs-29165/v3openalex-snapshot

Molecular and morphological clocks for estimating evolutionary divergence times

inferred← citeshttps://doi.org/10.21203/rs.3.rs-523676/v1openalex-snapshot

Geologically calibrated mammalian tree and the corresponding global events, including birth of human

inferred← citeshttps://doi.org/10.2139/ssrn.5954957openalex-snapshot

Phylogenomic assessment of microhylid frogs reveals widespread taxonomic confusion in the Asterophryinae and establishes the timing of diversification in Australia

inferred← citeshttps://doi.org/10.24072/pcjournal.556openalex-snapshot

Factors influencing the accuracy and precision in dating single gene trees

inferred← citeshttps://doi.org/10.24072/pcjournal.73openalex-snapshot

Probabilities of tree topologies with temporal constraints and diversification shifts

inferred← citeshttps://doi.org/10.24272/j.issn.2095-8137.2019.057openalex-snapshot

Conserved sequences identify the closest living relatives of primates

inferred← citeshttps://doi.org/10.24272/j.issn.2095-8137.2023.189openalex-snapshot

Improved mammalian family phylogeny using gap-rare multiple sequence alignment: A timetree of extant placentals and marsupials

inferred← citeshttps://doi.org/10.26879/1249openalex-snapshot

Twenty-five well-justified fossil calibrations for primate divergences

inferred← citeshttps://doi.org/10.31234/osf.io/yvcqgopenalex-snapshot

The biological roots of music and dance: Extending the credible signaling hypothesis to predator deterrence

inferred← citeshttps://doi.org/10.3389/fbinf.2023.1225807openalex-snapshot

Molecular timetrees using relaxed clocks and uncertain phylogenies

inferred← citeshttps://doi.org/10.3389/fbinf.2023.1284744openalex-snapshot

Completing a molecular timetree of apes and monkeys

inferred← citeshttps://doi.org/10.3389/fbinf.2025.1563786openalex-snapshot

Internal fossil constraints have more effect on the age estimates of crown Palaeognathae than different phylogenomic data type

inferred← citeshttps://doi.org/10.3389/fevo.2021.736741openalex-snapshot

Molecular Adaptation to Folivory and the Conservation Implications for Madagascar’s Lemurs

inferred← citeshttps://doi.org/10.3389/fgene.2019.01049openalex-snapshot

Using the Fossil Record to Evaluate Timetree Timescales

inferred← citeshttps://doi.org/10.3389/fgene.2020.00526openalex-snapshot

Rates and Rocks: Strengths and Weaknesses of Molecular Dating Methods

inferred← citeshttps://doi.org/10.3389/fgene.2021.662239openalex-snapshot

Positive Selection in Gene Regulatory Factors Suggests Adaptive Pleiotropic Changes During Human Evolution

inferred← citeshttps://doi.org/10.3390/cells9071663openalex-snapshot

Unravelling the Complex Duplication History of Deuterostome Glycerol Transporters

inferred← citeshttps://doi.org/10.3390/genes14091830openalex-snapshot

Homoplasy of Retrotransposon Insertions in Toothed Whales

inferred← citeshttps://doi.org/10.3410/f.734849306.793560700openalex-snapshot

Faculty Opinions recommendation of The conservation value of human-modified landscapes for the world's primates.

inferred← citeshttps://doi.org/10.6084/m9.figshare.13346682openalex-snapshot

Additional file 1 of Sphenodontian phylogeny and the impact of model choice in Bayesian morphological clock estimates of divergence times and evolutionary rates

inferred← citeshttps://doi.org/10.6084/m9.figshare.13346685openalex-snapshot

Additional file 2 of Sphenodontian phylogeny and the impact of model choice in Bayesian morphological clock estimates of divergence times and evolutionary rates

inferred← citeshttps://doi.org/10.6084/m9.figshare.13346688openalex-snapshot

Additional file 3 of Sphenodontian phylogeny and the impact of model choice in Bayesian morphological clock estimates of divergence times and evolutionary rates

inferred← citeshttps://doi.org/10.6084/m9.figshare.14431670openalex-snapshot

Additional file 1 of Mitogenomic phylogeny of Callithrix with special focus on human transferred taxa

inferred← citeshttps://doi.org/10.6084/m9.figshare.14583455openalex-snapshot

Additional file 1 of Molecular and morphological clocks for estimating evolutionary divergence times

inferred← citeshttps://doi.org/10.6084/m9.figshare.20786903openalex-snapshot

Additional file 1 of Organellar genome comparisons of Sargassum polycystum and S. plagiophyllum (Fucales, Phaeophyceae) with other Sargassum species

inferred← citeshttps://doi.org/10.6084/m9.figshare.20786906openalex-snapshot

Additional file 2 of Organellar genome comparisons of Sargassum polycystum and S. plagiophyllum (Fucales, Phaeophyceae) with other Sargassum species

inferred← citeshttps://doi.org/10.6084/m9.figshare.20786909openalex-snapshot

Additional file 3 of Organellar genome comparisons of Sargassum polycystum and S. plagiophyllum (Fucales, Phaeophyceae) with other Sargassum species

inferred← citeshttps://doi.org/10.6084/m9.figshare.20786915openalex-snapshot

Additional file 4 of Organellar genome comparisons of Sargassum polycystum and S. plagiophyllum (Fucales, Phaeophyceae) with other Sargassum species

inferred← citeshttps://doi.org/10.6084/m9.figshare.20786918openalex-snapshot

Additional file 5 of Organellar genome comparisons of Sargassum polycystum and S. plagiophyllum (Fucales, Phaeophyceae) with other Sargassum species

inferred← citeshttps://doi.org/10.6084/m9.figshare.20786921openalex-snapshot

Additional file 6 of Organellar genome comparisons of Sargassum polycystum and S. plagiophyllum (Fucales, Phaeophyceae) with other Sargassum species

inferred← citeshttps://doi.org/10.64898/2026.01.05.697806openalex-snapshot

Phylogenomic assessment of microhylid frogs reveals widespread taxonomic confusion in the Asterophryinae and establishes the timing of diversification in Australia

inferred← citeshttps://doi.org/10.64898/2026.05.28.728399openalex-snapshot

Molecular clock dating under mixture substitution models indicates contemporaneous emergence of Bradyrhizobium nodulation and legumes anchored by non-symbiotic relatives

inferred← citeshttps://doi.org/10.70675/2ec65bcazc401z4c3bz943fzbffd552991d2openalex-snapshot

Datations dans les arbres de gènes : spéciations, duplications, pertes

inferred← citeshttps://doi.org/10.70675/7fd34ffezc1d2z441azb463z80173e19b9d2openalex-snapshot

Characterizing and modeling the evolution of host-microbiota interactions

inferred← citeshttps://doi.org/10.70675/cee1bd02z1651z4abdzb608z1de55f119bb8openalex-snapshot

Se nourrir en forêt tropicale saisonnière : stratégies de déplacement et corrélats cognitifs chez le Gorille de l'Ouest

inferred← citeshttps://doi.org/10.7551/mitpress/13625.001.0001openalex-snapshot

Our Ancient Lakes

inferred← citeshttps://doi.org/10.7554/elife.103547.3openalex-snapshot

Ancient trans-species polymorphism at the Major Histocompatibility Complex in primates

inferred← citeshttps://doi.org/10.7554/elife.72460openalex-snapshot

Phylogenomic analyses of echinoid diversification prompt a re-evaluation of their fossil record

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