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PRDM9 forms an active trimer mediated by its repetitive zinc finger array

https://doi.org/10.1101/498428
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Why does the electrophoretic mobility of DNA in gels vary with the length of the molecule?
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GCN4, a eukaryotic transcriptional activator protein, binds as a dimer to target DNA.
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Zinc finger‐mediated protein interactions modulate Ikaros activity, a molecular control of lymphocyte development.
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Relative Contributions of the Zinc Fingers of Transcription Factor IIIA to the Energetics of DNA Binding
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Solution structure of the first three zinc fingers of TFIIIA bound to the cognate DNA sequence: determinants of affinity and sequence specificity
inferredcites →https://doi.org/10.1007/pl00000885openalex-snapshot
Three classes of C2H2 zinc finger proteins
inferredcites →https://doi.org/10.1007/s00412-006-0055-7openalex-snapshot
Chiasma formation: chromatin/axis interplay and the role(s) of the synaptonemal complex
inferredcites →https://doi.org/10.1007/s00412-017-0631-zopenalex-snapshot
The PRDM9 KRAB domain is required for meiosis and involved in protein interactions
inferredcites →https://doi.org/10.1007/s10577-017-9552-1openalex-snapshot
The long zinc finger domain of PRDM9 forms a highly stable and long-lived complex with its DNA recognition sequence
inferredcites →https://doi.org/10.1016/0022-2836(92)90248-iopenalex-snapshot
Specific interaction of the first three zinc fingers of TFIIIA with the internal control region of the Xenopus 5 S RNA gene
inferredcites →https://doi.org/10.1016/0092-8674(80)90160-9openalex-snapshot
Association of a 5S gene transcription factor with 5S RNA and altered levels of the factor during cell differentiation
inferredcites →https://doi.org/10.1016/j.cell.2016.09.035openalex-snapshot
The Landscape of Mouse Meiotic Double-Strand Break Formation, Processing, and Repair
inferredcites →https://doi.org/10.1016/j.celrep.2013.08.035openalex-snapshot
Molecular Basis for the Regulation of the H3K4 Methyltransferase Activity of PRDM9
inferredcites →https://doi.org/10.1016/j.molcel.2018.01.033openalex-snapshot
PRDM9 Methyltransferase Activity Is Essential for Meiotic DNA Double-Strand Break Formation at Its Binding Sites
inferredcites →https://doi.org/10.1016/j.tig.2017.12.017openalex-snapshot
PRDM9 and Its Role in Genetic Recombination
inferredcites →https://doi.org/10.1016/j.vascn.2010.03.002openalex-snapshot
Principles and problems of the electrophoretic mobility shift assay
inferredcites →https://doi.org/10.1016/s0969-2126(96)00064-0openalex-snapshot
The solution structure of the first zinc finger domain of SWI5: a novel structural extension to a common fold
inferredcites →https://doi.org/10.1016/s1097-2765(03)00043-1openalex-snapshot
Selective Dimerization of a C2H2 Zinc Finger Subfamily
inferredcites →https://doi.org/10.1038/89617openalex-snapshot
Selected peptide extension contacts hydrophobic patch on neighboring zinc finger and mediates dimerization on DNA.
inferredcites →https://doi.org/10.1038/nature04112openalex-snapshot
A histone H3 methyltransferase controls epigenetic events required for meiotic prophase
inferredcites →https://doi.org/10.1038/nature10336openalex-snapshot
The landscape of recombination in African Americans
inferredcites →https://doi.org/10.1038/nature11089openalex-snapshot
Genetic recombination is directed away from functional genomic elements in mice
inferredcites →https://doi.org/10.1038/nature16931openalex-snapshot
Re-engineering the zinc fingers of PRDM9 reverses hybrid sterility in mice
inferredcites →https://doi.org/10.1038/ncomms5370openalex-snapshot
Primate evolution of the recombination regulator PRDM9
inferredcites →https://doi.org/10.1038/nri747openalex-snapshot
Haematopoietic cell-fate decisions, chromatin regulation and ikaros
inferredcites →https://doi.org/10.1073/pnas.1109531108openalex-snapshot
Variants of the protein PRDM9 differentially regulate a set of human meiotic recombination hotspots highly active in African populations
inferredcites →https://doi.org/10.1073/pnas.77.7.4170openalex-snapshot
A specific transcription factor that can bind either the 5S RNA gene or 5S RNA.
inferredcites →https://doi.org/10.1073/pnas.95.6.2938openalex-snapshot
Differing roles for zinc fingers in DNA recognition: Structure of a six-finger transcription factor IIIA complex
inferredcites →https://doi.org/10.1080/15384101.2017.1361065openalex-snapshot
Genomic and chromatin features shaping meiotic double-strand break formation and repair in mice
inferredcites →https://doi.org/10.1091/mbc.e16-09-0686openalex-snapshot
PRDM9 interactions with other proteins provide a link between recombination hotspots and the chromosomal axis in meiosis
inferredcites →https://doi.org/10.1093/emboj/16.10.2814openalex-snapshot
Regulation of apoptosis and cell cycle arrest by Zac1, a novel zinc finger protein expressed in the pituitary gland and the brain
inferredcites →https://doi.org/10.1093/nar/21.14.3335openalex-snapshot
An EMSA-based method for determining the molecular weight of a protein - DNA complex
inferredcites →https://doi.org/10.1098/rstb.2016.0462openalex-snapshot
The consequences of sequence erosion in the evolution of recombination hotspots
inferredcites →https://doi.org/10.1101/gad.270009.115openalex-snapshot
The evolutionary turnover of recombination hot spots contributes to speciation in mice
inferredcites →https://doi.org/10.1101/gad.274928.115openalex-snapshot
Structural basis for human PRDM9 action at recombination hot spots
inferredcites →https://doi.org/10.1101/gr.124123.111openalex-snapshot
Death of PRDM9 coincides with stabilization of the recombination landscape in the dog genome
inferredcites →https://doi.org/10.1101/gr.170167.113openalex-snapshot
PRDM9 binding organizes hotspot nucleosomes and limits Holliday junction migration
inferredcites →https://doi.org/10.1101/gr.217240.116openalex-snapshot
In vivo binding of PRDM9 reveals interactions with noncanonical genomic sites
inferredcites →https://doi.org/10.1103/revmodphys.72.813openalex-snapshot
Electrophoresis of DNA and other polyelectrolytes: Physical mechanisms
inferredcites →https://doi.org/10.1126/science.1163601openalex-snapshot
A Mouse Speciation Gene Encodes a Meiotic Histone H3 Methyltransferase
inferredcites →https://doi.org/10.1126/science.1181495openalex-snapshot
Prdm9 Controls Activation of Mammalian Recombination Hotspots
inferredcites →https://doi.org/10.1126/science.1182363openalex-snapshot
Drive Against Hotspot Motifs in Primates Implicates the PRDM9 Gene in Meiotic Recombination
inferredcites →https://doi.org/10.1126/science.1183439openalex-snapshot
PRDM9 Is a Major Determinant of Meiotic Recombination Hotspots in Humans and Mice
inferredcites →https://doi.org/10.1126/science.1216872openalex-snapshot
A Fine-Scale Chimpanzee Genetic Map from Population Sequencing
inferredcites →https://doi.org/10.1126/science.1256442openalex-snapshot
Recombination initiation maps of individual human genomes
inferredcites →https://doi.org/10.1126/science.8378770openalex-snapshot
Crystal Structure of a Five-Finger GLI-DNA Complex: New Perspectives on Zinc Fingers
inferredcites →https://doi.org/10.1126/science.aad0843openalex-snapshot
Stable recombination hotspots in birds
inferredcites →https://doi.org/10.1128/mcb.14.12.8292openalex-snapshot
The Ikaros Gene Encodes a Family of Functionally Diverse Zinc Finger DNA-Binding Proteins
inferredcites →https://doi.org/10.1128/mcb.18.11.6447openalex-snapshot
Identification of DNA Recognition Sequences and Protein Interaction Domains of the Multiple-Zn-Finger Protein Roaz
inferredcites →https://doi.org/10.1128/mcb.23.3.988-1003.2003openalex-snapshot
Transcriptional Activities of the Zinc Finger Protein Zac Are Differentially Controlled by DNA Binding
inferredcites →https://doi.org/10.1146/annurev.biophys.29.1.183openalex-snapshot
DNA Recognition by Cys2His2 Zinc Finger Proteins
inferredcites →https://doi.org/10.1186/gb-2013-14-4-r35openalex-snapshot
DNA binding specificities of the long zinc-finger recombination protein PRDM9
inferredcites →https://doi.org/10.1186/s13072-015-0024-6openalex-snapshot
Affinity-seq detects genome-wide PRDM9 binding sites and reveals the impact of prior chromatin modifications on mammalian recombination hotspot usage
inferredcites →https://doi.org/10.1210/en.140.2.987openalex-snapshot
Inhibition of Zac1, a New Gene Differentially Expressed in the Anterior Pituitary, Increases Cell Proliferation
inferredcites →https://doi.org/10.1371/journal.pbio.1001176openalex-snapshot
Mouse PRDM9 DNA-Binding Specificity Determines Sites of Histone H3 Lysine 4 Trimethylation for Initiation of Meiotic Recombination
inferredcites →https://doi.org/10.1371/journal.pgen.1002854openalex-snapshot
Genetic Variants in REC8, RNF212, and PRDM9 Influence Male Recombination in Cattle
inferredcites →https://doi.org/10.1371/journal.pgen.1003044openalex-snapshot
Interallelic and Intergenic Incompatibilities of the Prdm9 (Hst1) Gene in Mouse Hybrid Sterility
inferredcites →https://doi.org/10.1371/journal.pgen.1003984openalex-snapshot
Genetic Recombination Is Targeted towards Gene Promoter Regions in Dogs
inferredcites →https://doi.org/10.1371/journal.pgen.1004916openalex-snapshot
PRDM9 Drives Evolutionary Erosion of Hotspots in Mus musculus through Haplotype-Specific Initiation of Meiotic Recombination
inferredcites →https://doi.org/10.1371/journal.pgen.1005512openalex-snapshot
Multimer Formation Explains Allelic Suppression of PRDM9 Recombination Hotspots
inferredcites →https://doi.org/10.1371/journal.pgen.1006146openalex-snapshot
The Meiotic Recombination Activator PRDM9 Trimethylates Both H3K36 and H3K4 at Recombination Hotspots In Vivo
inferredcites →https://doi.org/10.1371/journal.pgen.1007657openalex-snapshot
CXXC1 is not essential for normal DNA double-strand break formation and meiotic recombination in mouse
inferredcites →https://doi.org/10.1371/journal.pone.0039064openalex-snapshot
High Diversity at PRDM9 in Chimpanzees and Bonobos
inferredcites →https://doi.org/10.1371/journal.pone.0061746openalex-snapshot
Characterization of Prdm9 in Equids and Sterility in Mules
inferredcites →https://doi.org/10.1371/journal.pone.0095806openalex-snapshot
Prdm9 Incompatibility Controls Oligospermia and Delayed Fertility but No Selfish Transmission in Mouse Intersubspecific Hybrids
inferredcites →https://doi.org/10.4161/cc.5.6.2572openalex-snapshot
Meisetz, A Novel Histone Tri-Methyltransferase, Regulates Meiosis-Specific Epigenesis
inferredcites →https://doi.org/10.7554/elife.24133openalex-snapshot
Repeated losses of PRDM9-directed recombination despite the conservation of PRDM9 across vertebrates
inferredcites →https://doi.org/10.7554/elife.28383openalex-snapshot
A map of human PRDM9 binding provides evidence for novel behaviors of PRDM9 and other zinc-finger proteins in meiosis
inferredcites →https://doi.org/10.7554/elife.29502openalex-snapshot
Birth and death of a protein
inferredcites →https://doi.org/10.7554/elife.34282openalex-snapshot
Modulation of Prdm9-controlled meiotic chromosome asynapsis overrides hybrid sterility in mice
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