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High Diversity at PRDM9 in Chimpanzees and Bonobos

https://doi.org/10.1371/journal.pone.0039064

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Using randomization techniques to analyse behavioural data

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Elimination of heteroduplex artifacts when sequencing HLA genes amplified by polymerase chain reaction (PCR)

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Hybrid sterility in the mouse

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Demographic History and Genetic Differentiation in Apes

inferredcites →https://doi.org/10.1016/j.cub.2010.01.048openalex-snapshot

Meiosis: A PRDM9 Guide to the Hotspots of Recombination

inferredcites →https://doi.org/10.1016/j.tig.2011.02.001openalex-snapshot

What are the genomic drivers of the rapid evolution of PRDM9?

inferredcites →https://doi.org/10.1016/s0021-9258(19)39621-8openalex-snapshot

DNA damage promotes jumping between templates during enzymatic amplification.

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Genetic studies on male sterility of hybrids between laboratory and wild mice ( Mus musculus L.)

inferredcites →https://doi.org/10.1038/35072078openalex-snapshot

Meiotic recombination hot spots and cold spots

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Is the control of recombination conserved among diverse eukaryotes?

inferredcites →https://doi.org/10.1038/nature04112openalex-snapshot

A histone H3 methyltransferase controls epigenetic events required for meiotic prophase

inferredcites →https://doi.org/10.1038/nature09525openalex-snapshot

Fine-scale recombination rate differences between sexes, populations and individuals

inferredcites →https://doi.org/10.1038/nature10336openalex-snapshot

The landscape of recombination in African Americans

inferredcites →https://doi.org/10.1038/ng.213openalex-snapshot

A common sequence motif associated with recombination hot spots and genome instability in humans

inferredcites →https://doi.org/10.1038/ng.346openalex-snapshot

The rise and fall of a human recombination hot spot

inferredcites →https://doi.org/10.1038/ng.658openalex-snapshot

PRDM9 variation strongly influences recombination hot-spot activity and meiotic instability in humans

inferredcites →https://doi.org/10.1038/ng1010-821openalex-snapshot

PRDM9 marks the spot

inferredcites →https://doi.org/10.1038/ng1529openalex-snapshot

Fine-scale recombination patterns differ between chimpanzees and humans

inferredcites →https://doi.org/10.1038/nrg1947openalex-snapshot

An evolutionary view of human recombination

inferredcites →https://doi.org/10.1046/j.1365-2370.2002.00356.xopenalex-snapshot

Recombinant DRB sequences produced by mismatch repair of heteroduplexes during cloning in Escherichia coli

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PCR amplification of murine immunoglobulin germline V genes: Strategies for minimization of recombination artefacts

inferredcites →https://doi.org/10.1073/pnas.1109531108openalex-snapshot

Variants of the protein PRDM9 differentially regulate a set of human meiotic recombination hotspots highly active in African populations

inferredcites →https://doi.org/10.1073/pnas.87.7.2833openalex-snapshot

Rapid cloning of HLA-A,B cDNA by using the polymerase chain reaction: frequency and nature of errors produced in amplification.

inferredcites →https://doi.org/10.1073/pnas.94.15.8058openalex-snapshot

The hotspot conversion paradox and the evolution of meiotic recombination

inferredcites →https://doi.org/10.1093/bioinformatics/btl498openalex-snapshot

Meisetz and the birth of the KRAB motif

inferredcites →https://doi.org/10.1093/genetics/148.3.929openalex-snapshot

Likelihood Models for Detecting Positively Selected Amino Acid Sites and Applications to the HIV-1 Envelope Gene

inferredcites →https://doi.org/10.1093/genetics/155.1.431openalex-snapshot

Codon-Substitution Models for Heterogeneous Selection Pressure at Amino Acid Sites

inferredcites →https://doi.org/10.1093/molbev/msi097openalex-snapshot

Bayes Empirical Bayes Inference of Amino Acid Sites Under Positive Selection

inferredcites →https://doi.org/10.1093/molbev/msm088openalex-snapshot

PAML 4: Phylogenetic Analysis by Maximum Likelihood

inferredcites →https://doi.org/10.1093/molbev/msp259openalex-snapshot

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

inferredcites →https://doi.org/10.1093/nar/23.11.2049openalex-snapshot

Template-switching during DNA synthesis byThermus aquaticusDNA polymerase I

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003945openalex-snapshot

Accuracy and Power of the Likelihood Ratio Test in Detecting Adaptive Molecular Evolution

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a004007openalex-snapshot

A Novel Use of Equilibrium Frequencies in Models of Sequence Evolution

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040152openalex-snapshot

A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome.

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040153openalex-snapshot

A codon-based model of nucleotide substitution for protein-coding DNA sequences.

inferredcites →https://doi.org/10.1101/gr.124123.111openalex-snapshot

Death of PRDM9 coincides with stabilization of the recombination landscape in the dog genome

inferredcites →https://doi.org/10.1111/j.1471-8286.2007.01821.xopenalex-snapshot

FaBox: an online toolbox for fasta sequences

inferredcites →https://doi.org/10.1111/j.1558-5646.2007.00257.xopenalex-snapshot

ASYMMETRY AND POLYMORPHISM OF HYBRID MALE STERILITY DURING THE EARLY STAGES OF SPECIATION IN HOUSE MICE

inferredcites →https://doi.org/10.1126/science.1105322openalex-snapshot

Comparison of Fine-Scale Recombination Rates in Humans and Chimpanzees

inferredcites →https://doi.org/10.1126/science.1163601openalex-snapshot

A Mouse Speciation Gene Encodes a Meiotic Histone H3 Methyltransferase

inferredcites →https://doi.org/10.1126/science.1181495openalex-snapshot

Prdm9 Controls Activation of Mammalian Recombination Hotspots

inferredcites →https://doi.org/10.1126/science.1182363openalex-snapshot

Drive Against Hotspot Motifs in Primates Implicates the PRDM9 Gene in Meiotic Recombination

inferredcites →https://doi.org/10.1126/science.1183439openalex-snapshot

PRDM9 Is a Major Determinant of Meiotic Recombination Hotspots in Humans and Mice

inferredcites →https://doi.org/10.1126/science.1187155openalex-snapshot

Genetic Control of Hotspots

inferredcites →https://doi.org/10.1126/science.1216872openalex-snapshot

A Fine-Scale Chimpanzee Genetic Map from Population Sequencing

inferredcites →https://doi.org/10.1146/annurev.biochem.70.1.313openalex-snapshot

Design and Selection of Novel Cys2His2 Zinc Finger Proteins

inferredcites →https://doi.org/10.1146/annurev.ge.29.120195.002231openalex-snapshot

MEIOTIC RECOMBINATION HOTSPOTS

inferredcites →https://doi.org/10.1146/annurev.genet.41.110306.130301openalex-snapshot

Mammalian Meiotic Recombination Hot Spots

inferredcites →https://doi.org/10.1186/1471-2148-7-187openalex-snapshot

Family expansion and gene rearrangements contributed to the functional specialization of PRDM genes in vertebrates

inferredcites →https://doi.org/10.1201/9781315273075openalex-snapshot

Randomization, Bootstrap and Monte Carlo Methods in Biology

inferredcites →https://doi.org/10.1371/journal.pbio.1001176openalex-snapshot

Mouse PRDM9 DNA-Binding Specificity Determines Sites of Histone H3 Lysine 4 Trimethylation for Initiation of Meiotic Recombination

inferredcites →https://doi.org/10.1371/journal.pbio.1001211openalex-snapshot

The Case of the Fickle Fingers: How the PRDM9 Zinc Finger Protein Specifies Meiotic Recombination Hotspots in Humans

inferredcites →https://doi.org/10.1371/journal.pgen.1000753openalex-snapshot

Accelerated Evolution of the Prdm9 Speciation Gene across Diverse Metazoan Taxa

inferredcites →https://doi.org/10.1371/journal.pone.0008505openalex-snapshot

Extraordinary Molecular Evolution in the PRDM9 Fertility Gene

inferredcites →https://doi.org/10.1371/journal.pone.0020321openalex-snapshot

Variation in Human Recombination Rates and Its Genetic Determinants

inferredcites →https://doi.org/10.1371/journal.pone.0021605openalex-snapshot

Bonobos Fall within the Genomic Variation of Chimpanzees

inferredcites →https://doi.org/10.1371/journal.pone.0025498openalex-snapshot

Prdm9, a Major Determinant of Meiotic Recombination Hotspots, Is Not Functional in Dogs and Their Wild Relatives, Wolves and Coyotes

inferredcites →https://doi.org/10.1534/genetics.104.032144openalex-snapshot

Detecting Amino Acid Sites Under Positive Selection and Purifying Selection

inferredcites →https://doi.org/10.2164/jandrol.108.006262openalex-snapshot

Single‐Nucleotide Polymorphisms of the PRDM9 (MEISETZ) Gene in Patients With Nonobstructive Azoospermia

inferredcites →https://doi.org/10.2307/2533527openalex-snapshot

Randomization, Bootstrap and Monte Carlo Methods in Biology.

inferredcites →https://doi.org/10.3410/b2-37openalex-snapshot

PRDM9 sticks its zinc fingers into recombination hotspots and between species

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Unraveling recombination rate evolution using ancestral recombination maps

inferred← citeshttps://doi.org/10.1007/s00412-017-0631-zopenalex-snapshot

The PRDM9 KRAB domain is required for meiosis and involved in protein interactions

inferred← citeshttps://doi.org/10.1007/s00438-013-0784-2openalex-snapshot

High-resolution linkage map for two honeybee chromosomes: the hotspot quest

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Evolutionary dynamics of meiotic recombination hotspots regulator PRDM9 in bovids

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PRDM9 and Its Role in Genetic Recombination

inferred← citeshttps://doi.org/10.1038/ncomms5370openalex-snapshot

Primate evolution of the recombination regulator PRDM9

inferred← citeshttps://doi.org/10.1038/nrg3573openalex-snapshot

Meiotic recombination in mammals: localization and regulation

inferred← citeshttps://doi.org/10.1038/srep34618openalex-snapshot

The pioneering role of PRDM9 indel mutations in tarsier evolution

inferred← citeshttps://doi.org/10.1074/jbc.m116.721472openalex-snapshot

PR Domain-containing Protein 7 (PRDM7) Is a Histone 3 Lysine 4 Trimethyltransferase

inferred← citeshttps://doi.org/10.1074/jbc.m117.805754openalex-snapshot

Structural basis of human PR/SET domain 9 (PRDM9) allele C–specific recognition of its cognate DNA sequence

inferred← citeshttps://doi.org/10.1093/biolinnean/bly063openalex-snapshot

What is Speciation Genomics? The roles of ecology, gene flow, and genomic architecture in the formation of species

inferred← citeshttps://doi.org/10.1093/dnares/dst059openalex-snapshot

Prdm9 Polymorphism Unveils Mouse Evolutionary Tracks

inferred← citeshttps://doi.org/10.1093/gbe/evw022openalex-snapshot

No Distinction of Orthology/Paralogy between Human and Chimpanzee Rh Blood Group Genes

inferred← citeshttps://doi.org/10.1093/jhered/esy060openalex-snapshot

Hybrid Sterility with Meiotic Metaphase Arrest in Intersubspecific Mouse Crosses

inferred← citeshttps://doi.org/10.1093/molbev/msae063openalex-snapshot

Multiple Genomic Landscapes of Recombination and Genomic Divergence in Wild Populations of House Mice—The Role of Chromosomal Fusions and Prdm9

inferred← citeshttps://doi.org/10.1093/nar/gkag049openalex-snapshot

A novel dual histone mark reader ZCWPW2 regulates meiotic recombination through lactylation and transcriptional regulation in humans and mice

inferred← citeshttps://doi.org/10.1098/rsob.250171openalex-snapshot

The evolutionary entanglement of flipons with zinc fingers and retroelements has engendered a large family of Z-DNA and G-quadruplex binding proteins

inferred← citeshttps://doi.org/10.1101/498428openalex-snapshot

PRDM9 forms an active trimer mediated by its repetitive zinc finger array

inferred← citeshttps://doi.org/10.1101/gad.274928.115openalex-snapshot

Structural basis for human PRDM9 action at recombination hot spots

inferred← citeshttps://doi.org/10.1101/gr.151472.112openalex-snapshot

Global analysis of Drosophila Cys2-His2 zinc finger proteins reveals a multitude of novel recognition motifs and binding determinants

inferred← citeshttps://doi.org/10.1111/age.12487openalex-snapshot

Evidence of positive selection and concerted evolution in the rapidly evolving PRDM 9 zinc finger domain in goats and sheep

inferred← citeshttps://doi.org/10.1146/annurev-genet-110711-155423openalex-snapshot

Initiation of Meiotic Recombination: How and Where? Conservation and Specificities Among Eukaryotes

inferred← citeshttps://doi.org/10.1186/s12711-017-0330-5openalex-snapshot

The potential of shifting recombination hotspots to increase genetic gain in livestock breeding

inferred← citeshttps://doi.org/10.1186/s12864-022-08305-1openalex-snapshot

Evolution of the recombination regulator PRDM9 in minke whales

inferred← citeshttps://doi.org/10.1371/journal.pgen.1004916openalex-snapshot

PRDM9 Drives Evolutionary Erosion of Hotspots in Mus musculus through Haplotype-Specific Initiation of Meiotic Recombination

inferred← citeshttps://doi.org/10.1371/journal.pgen.1005011openalex-snapshot

Pervasive Variation of Transcription Factor Orthologs Contributes to Regulatory Network Evolution

inferred← citeshttps://doi.org/10.1371/journal.pgen.1005512openalex-snapshot

Multimer Formation Explains Allelic Suppression of PRDM9 Recombination Hotspots

inferred← citeshttps://doi.org/10.1371/journal.pgen.1007479openalex-snapshot

PRDM9, a driver of the genetic map

inferred← citeshttps://doi.org/10.1371/journal.pone.0085021openalex-snapshot

Diversity of Prdm9 Zinc Finger Array in Wild Mice Unravels New Facets of the Evolutionary Turnover of this Coding Minisatellite

inferred← citeshttps://doi.org/10.1371/journal.pone.0156159openalex-snapshot

Zinc Finger Domain of the PRDM9 Gene on Chromosome 1 Exhibits High Diversity in Ruminants but Its Paralog PRDM7 Contains Multiple Disruptive Mutations

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Dmanisi hominin fossils and the problem of the multiple species in the early Homo genus

inferred← citeshttps://doi.org/10.3389/fgene.2021.593725openalex-snapshot

Pinpointing the PRDM9-PRDM7 Gene Duplication Event During Primate Divergence

inferred← citeshttps://doi.org/10.3389/fgene.2021.662239openalex-snapshot

Positive Selection in Gene Regulatory Factors Suggests Adaptive Pleiotropic Changes During Human Evolution

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Fertility of hybrids of dromedary and Bactrian camels: A possible role of conserved architecture of zinc finger domain of recombination regulator PRDM9

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Dual histone methylation reader ZCWPW2 links histone methylation to initiation of meiotic recombination

inferred← citeshttps://doi.org/10.70675/4f23518fz0509z4fa5z96f0zb94275a9db50openalex-snapshot

Meiotic recombination evolution : Prdm9 gene variation and evolution in mice

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Rôle de l'activité méthyltransférase de la protéine PRDM9 dans la recombinaison méiotique chez la souris

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