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Extensive recombination suppression and chromosome-wide differentiation of a segregation distorter in Drosophila

https://doi.org/10.1101/504126
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Does genetic conflict drive rapid molecular evolution of nuclear transport genes in Drosophila?
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Gross chromosome rearrangements mediated by transposable elements in Drosophila melanogaster
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Age and sex-ratio expression in Drosophila mediopunctata
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Polyandry Prevents Extinction
inferredcites →https://doi.org/10.1016/s0168-9525(00)02104-1openalex-snapshot
It takes two transposons to tango:transposable-element-mediated chromosomal rearrangements
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Genetic rescue of inviable hybrids between Drosophila melanogaster and its sibling species
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Heterosis and the lack of coadaptation in Drosophila nasuta
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Reconstructing Indian population history
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Normalization of RNA-seq data using factor analysis of control genes or samples
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Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
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Are Drosophila SR drive chromosomes always balanced?
inferredcites →https://doi.org/10.1073/pnas.0605578104openalex-snapshot
Chromosome-wide linkage disequilibrium as a consequence of meiotic drive
inferredcites →https://doi.org/10.1073/pnas.0801848105openalex-snapshot
Fine-scale mapping of recombination rate in Drosophila refines its correlation to diversity and divergence
inferredcites →https://doi.org/10.1073/pnas.0836927100openalex-snapshot
A rapidly evolving MYB-related protein causes species isolation in Drosophila
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Mathematical model for studying genetic variation in terms of restriction endonucleases.
inferredcites →https://doi.org/10.1086/285923openalex-snapshot
Sex-Ratio Meiotic Drive in the Drosophila quinaria Group
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btp616openalex-snapshot
edgeR : a Bioconductor package for differential expression analysis of digital gene expression data
inferredcites →https://doi.org/10.1093/bioinformatics/btp698openalex-snapshot
Fast and accurate long-read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/genetics/105.1.71openalex-snapshot
EVIDENCE FOR EXTENSIVE GENETIC DIFFERENTIATION BETWEEN THE SEX-RATIO AND THE STANDARD ARRANGEMENT OF DROSOPHILA PSEUDOOBSCURA AND D. PERSIMILIS AND IDENTIFICATION OF HYBRID STERILITY FACTORS
inferredcites →https://doi.org/10.1093/genetics/140.1.377openalex-snapshot
The detection of linkage disequilibrium in molecular sequence data.
inferredcites →https://doi.org/10.1093/genetics/146.2.695openalex-snapshot
Recombination and Gene Flux Caused by Gene Conversion and Crossing Over in Inversion Heterokaryotypes
inferredcites →https://doi.org/10.1093/genetics/146.3.891openalex-snapshot
Polymorphism for Y-Linked Suppressors of sex-ratio in Two Natural Populations of Drosophila mediopunctata
inferredcites →https://doi.org/10.1093/genetics/147.2.635openalex-snapshot
The Sex-Ratio Trait in Drosophila simulans: Genetic Analysis of Distortion and Suppression
inferredcites →https://doi.org/10.1093/genetics/153.3.1297openalex-snapshot
Unusual Haplotype Structure at the Proximal Breakpoint of In(2L)t in a Natural Population of Drosophila melanogaster
inferredcites →https://doi.org/10.1093/genetics/155.2.685openalex-snapshot
Effect of Inversion Polymorphism on the Neutral Nucleotide Variability of Linked Chromosomal Regions in Drosophila
inferredcites →https://doi.org/10.1093/genetics/156.1.155openalex-snapshot
Molecular Population Genetics of X -Linked Genes in Drosophila pseudoobscura
inferredcites →https://doi.org/10.1093/genetics/158.3.1089openalex-snapshot
Complex Epistasis and the Genetic Basis of Hybrid Sterility in the Drosophila pseudoobscura Bogota-USA Hybridization
inferredcites →https://doi.org/10.1093/genetics/162.3.1221openalex-snapshot
Sex-RatioDrive inDrosophila simulans: Variation in Segregation Ratio ofXChromosomes From a Natural Population
inferredcites →https://doi.org/10.1093/genetics/163.1.217openalex-snapshot
A Novel System of Fertility Rescue in Drosophila Hybrids Reveals a Link Between Hybrid Lethality and Female Sterility
inferredcites →https://doi.org/10.1093/genetics/21.4.473openalex-snapshot
GEOGRAPHICAL DISTRIBUTION AND CYTOLOGY OF "SEX RATIO" IN DROSOPHILA PSEUDOOBSCURA AND RELATED SPECIES
inferredcites →https://doi.org/10.1093/genetics/76.3.477openalex-snapshot
GENETIC DISSECTION OF SEGREGATION DISTORTION. I. SUICIDE COMBINATIONS OF SD GENES
inferredcites →https://doi.org/10.1093/genetics/89.1.171openalex-snapshot
POPULATION DYNAMICS OF THE SEGREGATION DISTORTER POLYMORPHISM OF DROSOPHILA MELANOGASTER
inferredcites →https://doi.org/10.1093/molbev/msn190openalex-snapshot
Recurrent Positive Selection of the Drosophila Hybrid Incompatibility Gene Hmr
inferredcites →https://doi.org/10.1093/molbev/msr039openalex-snapshot
Evolutionary History of the Third Chromosome Gene Arrangements of Drosophila pseudoobscura Inferred from Inversion Breakpoints
inferredcites →https://doi.org/10.1093/nar/gkt214openalex-snapshot
The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025589openalex-snapshot
Molecular evolution of the Sex-Ratio inversion complex in Drosophila pseudoobscura: analysis of the Esterase-5 gene region
inferredcites →https://doi.org/10.1098/rspb.2013.3259openalex-snapshot
Does polyandry control population sex ratio via regulation of a selfish gene?
inferredcites →https://doi.org/10.1098/rstb.2011.0250openalex-snapshot
Genomic impacts of chromosomal inversions in parapatric Drosophila species
inferredcites →https://doi.org/10.1098/rstb.2012.0049openalex-snapshot
The dynamic relationship between polyandry and selfish genetic elements
inferredcites →https://doi.org/10.1101/305490openalex-snapshot
Interference hypothesis for recombination suppression in chromosomal inversion heterozygotes: A formal genetics analysis in Drosophila melanogaster
inferredcites →https://doi.org/10.1111/evo.12658openalex-snapshot
Origin, evolution, and population genetics of the selfish Segregation Distorter gene duplication in European and African populations of Drosophila melanogaster
inferredcites →https://doi.org/10.1111/j.1469-1809.1943.tb02321.xopenalex-snapshot
THE ESTIMATION OF MAP DISTANCES FROM RECOMBINATION VALUES
inferredcites →https://doi.org/10.1111/j.1558-5646.1958.tb02968.xopenalex-snapshot
GENETICS OF NATURAL POPULATIONS. XXVII.: THE GENETIC CHANGES IN POPULATIONS OFDROSOPHILA PSEUDOOBSCURAIN THE AMERICAN SOUTHWEST
inferredcites →https://doi.org/10.1111/j.1558-5646.1981.tb04886.xopenalex-snapshot
MULTIPLE MATING AND THE “SEX-RATIO” TRAIT INDROSOPHILA PSEUDOOBSCURA
inferredcites →https://doi.org/10.1111/j.1558-5646.1996.tb03888.xopenalex-snapshot
SELECTION AND THE “SEX-RATIO” POLYMORPHISM IN NATURAL POPULATIONS OFDROSOPHILA PSEUDOOBSCURA
inferredcites →https://doi.org/10.1111/j.1558-5646.1997.tb05111.xopenalex-snapshot
THESEX-RATIOTRAIT INDROSOPHILA SIMULANS:GEOGRAPHICAL DISTRIBUTION OF DISTORTION AND RESISTANCE
inferredcites →https://doi.org/10.1111/j.1601-5223.1988.tb00176.xopenalex-snapshot
Crossing over between linked inversions in Drosophila ananassae
inferredcites →https://doi.org/10.1111/j.1601-5223.1998.00105.xopenalex-snapshot
Chromosomal Structure and Recombination between Inversions in drosophila Subobscura
inferredcites →https://doi.org/10.1111/j.2517-6161.1995.tb02031.xopenalex-snapshot
Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
inferredcites →https://doi.org/10.1111/mec.14381openalex-snapshot
Genomics of natural populations: Evolutionary forces that establish and maintain gene arrangements in Drosophila pseudoobscura
inferredcites →https://doi.org/10.1126/science.1163934openalex-snapshot
A Single Gene Causes Both Male Sterility and Segregation Distortion in Drosophila Hybrids
inferredcites →https://doi.org/10.1126/science.133.3463.1489openalex-snapshot
Nature of "Sex-ratio" Agent in Drosophila
inferredcites →https://doi.org/10.1126/science.156.3774.477openalex-snapshot
Extraordinary Sex Ratios
inferredcites →https://doi.org/10.1126/science.285.5426.415openalex-snapshot
Generation of a Widespread Drosophila Inversion by a Transposable Element
inferredcites →https://doi.org/10.1146/annurev.ecolsys.32.081501.113958openalex-snapshot
Sex Chromosome Meiotic Drive
inferredcites →https://doi.org/10.1146/annurev.ge.25.120191.002455openalex-snapshot
SEGREGATION DISTORTERS
inferredcites →https://doi.org/10.1146/annurev.genet.37.110801.143030openalex-snapshot
Transmission Ratio Distortion in Mice
inferredcites →https://doi.org/10.1186/1471-2105-12-480openalex-snapshot
GC-Content Normalization for RNA-Seq Data
inferredcites →https://doi.org/10.1186/gb-2010-11-10-r106openalex-snapshot
Differential expression analysis for sequence count data
inferredcites →https://doi.org/10.1242/dmm.005058openalex-snapshot
UDP-galactose 4′ epimerase (GALE) is essential for development ofDrosophila melanogaster
inferredcites →https://doi.org/10.1371/journal.pgen.1003056openalex-snapshot
Population Genomics of Inversion Polymorphisms in Drosophila melanogaster
inferredcites →https://doi.org/10.1371/journal.pgen.1005605openalex-snapshot
Lateral and End-On Kinetochore Attachments Are Coordinated to Achieve Bi-orientation in Drosophila Oocytes
inferredcites →https://doi.org/10.1371/journal.pgen.1007526openalex-snapshot
Ancestral polymorphisms explain the role of chromosomal inversions in speciation
inferredcites →https://doi.org/10.1371/journal.pone.0042649openalex-snapshot
Estimates of Genetic Differentiation Measured by FST Do Not Necessarily Require Large Sample Sizes When Using Many SNP Markers
inferredcites →https://doi.org/10.1515/1544-6115.1826openalex-snapshot
Detecting Differential Expression in RNA-sequence Data Using Quasi-likelihood with Shrunken Dispersion Estimates
inferredcites →https://doi.org/10.1534/g3.114.014860openalex-snapshot
Evidence for Stabilizing Selection on Codon Usage in Chromosomal Rearrangements ofDrosophila pseudoobscura
inferredcites →https://doi.org/10.1534/genetics.104.032748openalex-snapshot
Chromosomal Inversion Polymorphism Leads to Extensive Genetic Structure
inferredcites →https://doi.org/10.1534/genetics.104.038810openalex-snapshot
The Structure and Population Genetics of the Breakpoints Associated With the Cosmopolitan Chromosomal Inversion In(3R)Payne in Drosophila melanogaster
inferredcites →https://doi.org/10.1534/genetics.105.041947openalex-snapshot
Mechanisms of Genetic Exchange Within the Chromosomal Inversions of Drosophila pseudoobscura
inferredcites →https://doi.org/10.1534/genetics.105.047985openalex-snapshot
Chromosome Inversions, Local Adaptation and Speciation
inferredcites →https://doi.org/10.1534/genetics.106.064758openalex-snapshot
Evaluation of the Genomic Extent of Effects of Fixed Inversion Differences on Intraspecific Variation and Interspecific Gene Flow in Drosophila pseudoobscura and D. persimilis
inferredcites →https://doi.org/10.1534/genetics.107.070672openalex-snapshot
Divergence Between the Drosophila pseudoobscura and D. persimilis Genome Sequences in Relation to Chromosomal Inversions
inferredcites →https://doi.org/10.1534/genetics.107.086074openalex-snapshot
Polytene Chromosomal Maps of 11 Drosophila Species: The Order of Genomic Scaffolds Inferred From Genetic and Physical Maps
inferredcites →https://doi.org/10.1534/genetics.108.089409openalex-snapshot
Correlation-Based Inference for Linkage Disequilibrium With Multiple Alleles
inferredcites →https://doi.org/10.1534/genetics.112.141390openalex-snapshot
The SelfishSegregation DistorterGene Complex ofDrosophila melanogaster
inferredcites →https://doi.org/10.1534/genetics.112.141622openalex-snapshot
Sequence-Based Detection and Breakpoint Assembly of Polymorphic Inversions
inferredcites →https://doi.org/10.1534/genetics.116.191429openalex-snapshot
Genomics of Natural Populations: How Differentially Expressed Genes Shape the Evolution of Chromosomal Inversions in Drosophila pseudoobscura
inferredcites →https://doi.org/10.1534/genetics.117.300513openalex-snapshot
Complex History and Differentiation Patterns of the t-Haplotype, a Mouse Meiotic Driver
inferredcites →https://doi.org/10.1534/genetics.166.1.265openalex-snapshot
Evolution of Autosomal Suppression of the Sex-Ratio Trait in Drosophila
inferredcites →https://doi.org/10.2307/2405380openalex-snapshot
Studies on 'Sex-Ratio' in Drosophila pseudoobscura. I. Selection and 'Sex- Ratio'
inferredcites →https://doi.org/10.2307/2405860openalex-snapshot
Genetics of Natural Populations. XXVII. The Genetic Changes in Populations of Drosophila pseudoobscura in the American Southwest
inferredcites →https://doi.org/10.2307/2407837openalex-snapshot
Multiple Mating and the "Sex-Ratio" Trait in Drosophila pseudoobscura
inferredcites →https://doi.org/10.2307/2411010openalex-snapshot
The Sex-Ratio Trait in Drosophila simulans: Geographical Distribution of Distortion and Resistance
inferredcites →https://doi.org/10.48550/arxiv.1207.3907openalex-snapshot
Haplotype-based variant detection from short-read sequencing
inferredcites →https://doi.org/10.5962/bhl.title.27468openalex-snapshot
The genetical theory of natural selection
inferredcites →https://doi.org/10.7312/nei-92038openalex-snapshot
Molecular Evolutionary Genetics

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1093/molbev/msaa038openalex-snapshot
Predicting the Landscape of Recombination Using Deep Learning
inferred← citeshttps://doi.org/10.1098/rspb.2019.1534openalex-snapshot
An assessment of the immune costs associated with meiotic drive elements inDrosophila
inferred← citeshttps://doi.org/10.1098/rspb.2019.2267openalex-snapshot
Ancient gene drives: an evolutionary paradox
inferred← citeshttps://doi.org/10.1101/662247openalex-snapshot
Inferring the landscape of recombination using recurrent neural networks
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