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Genomics of natural populations: Evolutionary forces that establish and maintain gene arrangements in Drosophila pseudoobscura

https://doi.org/10.1111/mec.14381
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Paracentric inversions in humans: A review of 446 paracentric inversions with presentation of 120 new cases
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Chromosome inversion polymorphisms in Drosophila melanogaster II. Geographic clines and climatic associations in Australasia, North America and Asia
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Experimentelle Beitr�ge Zum Problem des Positiven Heterosiseffektes Bei der Strukturpolymorphen ArtDrosophila Subobscura
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Linkage disequilibrium in finite populations
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Monoterpene chemodiversity of ponderosa pine in relation to herbivory and bark beetle colonization
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Chromosomal polymorphism in two species of Hypancistrus (Siluriformes: Loricariidae): an integrative approach for understanding their biodiversity
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Chromosomal differentiation and adaptation to human environments in the Anopheles gambiae complex
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Gene Density, Transcription, and Insulators Contribute to the Partition of the Drosophila Genome into Physical Domains
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Associative overdominance caused by linked detrimental mutations
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Selection of new inversions in multi-locus genetic systems
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The hitch-hiking effect of a favourable gene
inferredcites →https://doi.org/10.1017/s0016672302005955openalex-snapshot
Molecular population genetics of sequence length diversity in the Adh region of Drosophila pseudoobscura
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The hitch-hiking effect of a favourable gene
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A sequential coalescent algorithm for chromosomal inversions
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The genome of the model beetle and pest Tribolium castaneum
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Higher rates of sex evolve in spatially heterogeneous environments
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The Drosophila melanogaster Genetic Reference Panel
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Gibbon genome and the fast karyotype evolution of small apes
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Sex speeds adaptation by altering the dynamics of molecular evolution
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A heterozygous moth genome provides insights into herbivory and detoxification
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A genetic mechanism for female-limited Batesian mimicry in Papilio butterfly
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A supergene determines highly divergent male reproductive morphs in the ruff
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A framework for variation discovery and genotyping using next-generation DNA sequencing data
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A common inversion under selection in Europeans
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Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
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Prospects for inferring very large phylogenies by using the neighbor-joining method
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Evolutionary genomics of inversions in Drosophila pseudoobscura : Evidence for epistasis
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Genome sequence of the Asian Tiger mosquito, Aedes albopictus , reveals insights into its biology, genetics, and evolution
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Rare recombination events generate sequence diversity among balancer chromosomes in Drosophila melanogaster
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Chromosomal inversions and the reproductive isolation of species
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A molecular approach to the study of genic heterozygosity in natural populations. 3. Direct evidence of coadaptation in gene arrangements of Drosophila.
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Molecular evolution of inversions in Drosophila pseudoobscura: the amylase gene region.
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Four decades of inversion polymorphism in Drosophila pseudoobscura.
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Violin Plots: A Box Plot-Density Trace Synergism
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Long-Distance Migration of Drosophila. 2. Presence in Desolate Sites and Dispersal Near a Desert Oasis
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Temperature‐Related Genetic Changes in Laboratory Populations ofDrosophila subobscura: Evidence against Simple Climatic‐Based Explanations for Latitudinal Clines
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Fast and accurate short read alignment with Burrows–Wheeler transform
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The Sequence Alignment/Map format and SAMtools
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The Genetic Basis for Variation in Olfactory Behavior in Drosophila melanogaster
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Validation of Rearrangement Break Points Identified by Paired-End Sequencing in Natural Populations of Drosophila melanogaster
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Complex Patterns of Local Adaptation in Teosinte
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Distinguishing the forces controlling genetic variation at the Xdh locus in Drosophila pseudoobscura.
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Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.
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Estimates of gene flow in Drosophila pseudoobscura determined from nucleotide sequence analysis of the alcohol dehydrogenase region.
inferredcites →https://doi.org/10.1093/genetics/136.3.1105openalex-snapshot
Mitochondrial DNA variation and the evolution of Robertsonian chromosomal races of house mice, Mus domesticus.
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Recombination and Gene Flux Caused by Gene Conversion and Crossing Over in Inversion Heterokaryotypes
inferredcites →https://doi.org/10.1093/genetics/153.1.251openalex-snapshot
Recombination Rate Predicts Inversion Size in Diptera
inferredcites →https://doi.org/10.1093/genetics/155.2.685openalex-snapshot
Effect of Inversion Polymorphism on the Neutral Nucleotide Variability of Linked Chromosomal Regions in Drosophila
inferredcites →https://doi.org/10.1093/genetics/156.1.155openalex-snapshot
Molecular Population Genetics of X -Linked Genes in Drosophila pseudoobscura
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Distinguishing Between Selection and Population Expansion in an Experimental Lineage of Bacteriophage T7
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A Method for Detecting Recent Selection in the Human Genome From Allele Age Estimates
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THE RELATIONS OF INVERSIONS IN THE X CHROMOSOME OF DROSOPHILA MELANOGASTER TO CROSSING OVER AND DISJUNCTION
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INVERSIONS IN THE CHROMOSOMES OF DROSOPHILA PSEUDOOBSCURA
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GENETICS OF NATURAL POPULATIONS IX. TEMPORAL CHANGES IN THE COMPOSITION OF POPULATIONS OF DROSOPHILA PSEUDOOBSCURA
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GENETICS OF NATURAL POPULATIONS. XVI. ALTITUDINAL AND SEASONAL CHANGES PRODUCED BY NATURAL SELECTION IN CERTAIN POPULATIONS OF DROSOPHILA PSEUDOOBSCURA AND DROSOPHILA PERSIMILIS
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GENETICS OF NATURAL POPULATIONS. XVIII. EXPERIMENTS ON CHROMOSOMES OF DROSOPHILA PSEUDOOBSCURA FROM DIFFERENT GEOGRAPHIC REGIONS
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GENETICS OF NATURAL POPULATIONS. XIX. ORIGIN OF HETEROSIS THROUGH NATURAL SELECTION IN POPULATIONS OF DROSOPHILA PSEUDOOBSCURA
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NON-RANDOM DISJUNCTION IN DROSOPHILA
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A MOLECULAR APPROACH TO THE STUDY OF GENIC HETEROZYGOSITY IN NATURAL POPULATIONS. V. FURTHER DIRECT EVIDENCE OF COADAPTATION IN INVERSIONS OF DROSOPHILA
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THE AGE OF A NEUTRAL MUTANT PERSISTING IN A FINITE POPULATION
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INVERSION CLINES IN POPULATIONS OF DROSOPHILA MELANOGASTER
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Segmental Duplication, Microinversion, and Gene Loss Associated with a Complex Inversion Breakpoint Region in Drosophila
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EVOLUTIONARY PACE OF CHROMOSOMAL POLYMORPHISM IN COLONIZING POPULATIONS OF DROSOPHILA SUBOBSCURA: AN EVOLUTIONARY TIME SERIES
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QTL MAPPING REVEALS A STRIKING COINCIDENCE IN THE POSITIONS OF GENOMIC REGIONS ASSOCIATED WITH ADAPTIVE VARIATION IN BODY SIZE IN PARALLEL CLINES OF DROSOPHILA MELANOGASTER ON DIFFERENT CONTINENTS
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The latitudinal cline in the In(3R)Payne inversion polymorphism has shifted in the last 20 years in Australian Drosophila melanogaster populations
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Molecular evidence for glacial refugia of mountain plants in the European Alps
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SELECTION AND INVERSION POLYMORPHISM IN EXPERIMENTAL POPULATIONS OFDROSOPHILA PSEUDOOBSCURAINITIATED WITH THE CHROMOSOMAL CONSTITUTIONS OF NATURAL POPULATIONS
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THE EXPECTED FIXATION RATE OF CHROMOSOMAL INVERSIONS
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CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP
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INVERSION LENGTH AND BREAKPOINT DISTRIBUTION IN THEDROSOPHILA BUZZATIISPECIES COMPLEX: IS INVERSION LENGTH A SELECTED TRAIT?
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CLINAL DISTRIBUTION OF A CHROMOSOMAL REARRANGEMENT: A PRECURSOR TO CHROMOSOMAL SPECIATION?
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SELECTION IN HETEROGENEOUS ENVIRONMENTS MAINTAINS THE GENE ARRANGEMENT POLYMORPHISM OF DROSOPHILA PSEUDOOBSCURA
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STRUCTURE AND POPULATION GENETICS OF THE BREAKPOINTS OF A POLYMORPHIC INVERSION INDROSOPHILA SUBOBSCURA
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Parallel effects of the inversion In(3R)Payne on body size across the North American and Australian clines in Drosophila melanogaster
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Tracking changes in chromosomal arrangements and their genetic content during adaptation
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Inference of chromosomal inversion dynamics from P ool‐ S eq data in natural and laboratory populations of D rosophila melanogaster
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A Polytene Chromosome Analysis of the Anopheles gambiae Species Complex
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Genome Sequence of Aedes aegypti , a Major Arbovirus Vector
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Sequencing of 50 Human Exomes Reveals Adaptation to High Altitude
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Extensive introgression in a malaria vector species complex revealed by phylogenomics
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Gene Discovery for Enzymes Involved in Limonene Modification or Utilization by the Mountain Pine Beetle-Associated Pathogen Grosmannia clavigera
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Revisiting the Impact of Inversions in Evolution: From Population Genetic Markers to Drivers of Adaptive Shifts and Speciation?
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NONRANDOM DISJUNCTION IN DROSOPHILA
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Chromosomal Polymorphisms in African Vlei Rats, Otomys irroratus (Muridae: Otomyini), Detected by Banding Techniques and Chromosome Painting: Inversions, Centromeric Shifts and Diploid Number Variation
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Conservation genetics and phylogeography of endangered and endemic shrub Tetraena mongolica (Zygophyllaceae) in Inner Mongolia, China
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Gene alterations at Drosophila inversion breakpoints provide prima facie evidence for natural selection as an explanation for rapid chromosomal evolution
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The genomic distribution of population substructure in four populations using 8,525 autosomal SNPs
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Dynamic regulation of genome-wide pre-mRNA splicing and stress tolerance by the Sm-like protein LSm5 in Arabidopsis
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The genome and life-stage specific transcriptomes of Globodera pallidaelucidate key aspects of plant parasitism by a cyst nematode
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Genome of the house fly, Musca domestica L., a global vector of diseases with adaptations to a septic environment
inferredcites →https://doi.org/10.1214/aos/1074290335openalex-snapshot
The positive false discovery rate: a Bayesian interpretation and the q-value
inferredcites →https://doi.org/10.1371/journal.pbio.0050152openalex-snapshot
Principles of Genome Evolution in the Drosophila melanogaster Species Group
inferredcites →https://doi.org/10.1371/journal.pbio.1000313openalex-snapshot
Genome Sequence of the Pea Aphid Acyrthosiphon pisum
inferredcites →https://doi.org/10.1371/journal.pbio.1001317openalex-snapshot
The Evolution of Sex Is Favoured During Adaptation to New Environments
inferredcites →https://doi.org/10.1371/journal.pbio.1001422openalex-snapshot
Recombination Modulates How Selection Affects Linked Sites in Drosophila
inferredcites →https://doi.org/10.1534/g3.114.014860openalex-snapshot
Evidence for Stabilizing Selection on Codon Usage in Chromosomal Rearrangements ofDrosophila pseudoobscura
inferredcites →https://doi.org/10.1534/genetics.105.041947openalex-snapshot
Mechanisms of Genetic Exchange Within the Chromosomal Inversions of Drosophila pseudoobscura
inferredcites →https://doi.org/10.1534/genetics.105.047985openalex-snapshot
Chromosome Inversions, Local Adaptation and Speciation
inferredcites →https://doi.org/10.1534/genetics.105.053173openalex-snapshot
Patterns of Diversity and Linkage Disequilibrium Within the Cosmopolitan Inversion In(3R)Payne in Drosophila melanogaster Are Indicative of Coadaptation
inferredcites →https://doi.org/10.1534/genetics.107.086074openalex-snapshot
Polytene Chromosomal Maps of 11 Drosophila Species: The Order of Genomic Scaffolds Inferred From Genetic and Physical Maps
inferredcites →https://doi.org/10.1534/genetics.107.086108openalex-snapshot
Chromosomal Rearrangement Inferred From Comparisons of 12 Drosophila Genomes
inferredcites →https://doi.org/10.1534/genetics.108.089409openalex-snapshot
Correlation-Based Inference for Linkage Disequilibrium With Multiple Alleles
inferredcites →https://doi.org/10.1534/genetics.110.123059openalex-snapshot
Genomic Differentiation Between Temperate and Tropical Australian Populations ofDrosophila melanogaster
inferredcites →https://doi.org/10.1534/genetics.111.137794openalex-snapshot
Ecological Genomics of Anopheles gambiae Along a Latitudinal Cline: A Population-Resequencing Approach
inferredcites →https://doi.org/10.1534/genetics.112.141622openalex-snapshot
Sequence-Based Detection and Breakpoint Assembly of Polymorphic Inversions
inferredcites →https://doi.org/10.1534/genetics.112.142018openalex-snapshot
Genomic Variation in Natural Populations ofDrosophila melanogaster
inferredcites →https://doi.org/10.1534/genetics.115.183566openalex-snapshot
A Segregating Inversion Generates Fitness Variation in Yellow Monkeyflower (Mimulus guttatus)
inferredcites →https://doi.org/10.1534/genetics.116.190389openalex-snapshot
Selection on Inversion Breakpoints Favors Proximity to Pairing Sensitive Sites in Drosophila melanogaster
inferredcites →https://doi.org/10.1534/genetics.116.191429openalex-snapshot
Genomics of Natural Populations: How Differentially Expressed Genes Shape the Evolution of Chromosomal Inversions in Drosophila pseudoobscura
inferredcites →https://doi.org/10.1554/02-577openalex-snapshot
EVOLUTIONARY PACE OF CHROMOSOMAL POLYMORPHISM IN COLONIZING POPULATIONS OF DROSOPHILA SUBOBSCURA: AN EVOLUTIONARY TIME SERIES
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Geographic Patterns of Inversion Polymorphism in the Second Chromosome of the CactophilicDrosophila buzzatiifrom Northeastern Argentina
inferredcites →https://doi.org/10.2298/gensr1503959sopenalex-snapshot
Four decades of inversion polymorphism in Drosophila pseudoobscura from Mexico
inferredcites →https://doi.org/10.2307/1942552openalex-snapshot
Proximal Causes of Natal Dispersal in Belding's Ground Squirrels (Spermophilus Beldingi)
inferredcites →https://doi.org/10.2307/2406763openalex-snapshot
Selection and Inversion Polymorphism in Experimental Populations of Drosophila pseudoobscura Initiated with the Chromosomal Constitutions of Natural Populations
inferredcites →https://doi.org/10.2307/2411044openalex-snapshot
Inversion Length and Breakpoint Distribution in the Drosophila buzzatii Species Complex: Is Inversion Length a Selected Trait?
inferredcites →https://doi.org/10.48550/arxiv.1207.3907openalex-snapshot
Haplotype-based variant detection from short-read sequencing
inferredcites →https://doi.org/10.5281/zenodo.10742696openalex-snapshot
Chromosomal races in Drosophila pseudoobscura and Drosophila persimilis.

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Inversion evolutionary rates might limit the experimental identification of inversion breakpoints in non-model species
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Genomics of natural populations: gene conversion events reveal selected genes within the inversions of Drosophila pseudoobscura
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Fine-Scale Position Effects Shape the Distribution of Inversion Breakpoints in Drosophila melanogaster
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Complex Genomic Landscape of Inversion Polymorphism in Europe's Most Destructive Forest Pest
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Consequences of Single-Locus and Tightly Linked Genomic Architectures for Evolutionary Responses to Environmental Change
inferred← citeshttps://doi.org/10.1093/jhered/esy057openalex-snapshot
Computational Sequence Analysis of Inversion Breakpoint Regions in the CactophilicDrosophila mojavensisLineage
inferred← citeshttps://doi.org/10.1093/molbev/msad118openalex-snapshot
An Ancestral Balanced Inversion Polymorphism Confers Global Adaptation
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The relevance of chromatin architecture to genome rearrangements in Drosophila
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Evolutionary Influences on Local Patterns of Genetic Relatedness
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Extensive recombination suppression and chromosome-wide differentiation of a segregation distorter in Drosophila
inferred← citeshttps://doi.org/10.1111/1365-2656.13711openalex-snapshot
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inferred← citeshttps://doi.org/10.1111/evo.14278openalex-snapshot
Inversions shape the divergence of Drosophila pseudoobscura and Drosophila persimilis on multiple timescales
inferred← citeshttps://doi.org/10.1111/jeb.14242openalex-snapshot
How chromosomal inversions reorient the evolutionary process
inferred← citeshttps://doi.org/10.1111/mec.14804openalex-snapshot
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inferred← citeshttps://doi.org/10.1111/mec.14921openalex-snapshot
Pervasive gene conversion in chromosomal inversion heterozygotes
inferred← citeshttps://doi.org/10.1111/mec.14923openalex-snapshot
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inferred← citeshttps://doi.org/10.1111/mec.16305openalex-snapshot
Stable inversion clines in a grasshopper species group despite complex geographical history
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inferred← citeshttps://doi.org/10.1371/journal.pbio.3003043openalex-snapshot
Incomplete recombination suppression fuels extensive haplotype diversity in a butterfly colour pattern supergene
inferred← citeshttps://doi.org/10.1371/journal.pgen.1007526openalex-snapshot
Ancestral polymorphisms explain the role of chromosomal inversions in speciation
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In Silico Karyotyping of Chromosomally Polymorphic Malaria Mosquitoes in the Anopheles gambiae Complex
inferred← citeshttps://doi.org/10.1534/genetics.118.301084openalex-snapshot
Muller “Elements” in Drosophila : How the Search for the Genetic Basis for Speciation Led to the Birth of Comparative Genomics
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Extensive Recombination Suppression and Epistatic Selection Causes Chromosome-Wide Differentiation of a Selfish Sex Chromosome in Drosophila pseudoobscura
inferred← citeshttps://doi.org/10.3389/fgene.2020.565836openalex-snapshot
The Cyclically Seasonal Drosophila subobscura Inversion O7 Originated From Fragile Genomic Sites and Relocated Immunity and Metabolic Genes
inferred← citeshttps://doi.org/10.3390/genes11020165openalex-snapshot
Chromosome and Genome Divergence between the Cryptic Eurasian Malaria Vector-Species Anopheles messeae and Anopheles daciae
inferred← citeshttps://doi.org/10.64898/2026.04.06.716560openalex-snapshot
Drosophila pseudoobscura third chromosome inversion arrangements have temperature-dependent and sex-specific effects on life history traits
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Epistatic selection on a selfish Segregation Distorter supergene – drive, recombination, and genetic load
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