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Transcriptome landscape of a thermal-tolerant coral endosymbiont reveals molecular signatures of symbiosis and dysbiosis
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Expression of the rabbit sperm protein Sp17 in cos cells and interaction of recombinant Sp17 with the rabbit zona pellucida
inferredcites →https://doi.org/10.1002/pmic.200900595openalex-snapshot
Proteomic analysis of symbiosome membranes in Cnidaria–dinoflagellate endosymbiosis
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Sequence of a Rabbit Sperm Zona Pellucida Binding Protein and Localization during the Acrosome Reaction
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Microneme Proteins in Apicomplexans
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Culture of Marine Invertebrate Animals
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Molecular Identification of Fungi
inferredcites →https://doi.org/10.1007/bf00303779openalex-snapshot
Coral reef bleaching: ecological perspectives
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Role of glutamine synthetase in ammonia assimilation by symbiotic marine dinoflagellates (zooxanthellae)
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Major colour patterns of reef-building corals are due to a family of GFP-like proteins
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Genetic diversity of free-living Symbiodinium in surface water and sediment of Hawai‘i and Florida
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Screening by coral green fluorescent protein (GFP)-like chromoproteins supports a role in photoprotection of zooxanthellae
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Genetic diversity of free-living Symbiodinium in the Caribbean: the importance of habitats and seasons
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Muller’s ratchet in symbiont populations
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Exogenously applied spermidine improves drought tolerance in creeping bentgrass associated with changes in antioxidant defense, endogenous polyamines and phytohormones
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Photophysiological and thermal tolerance of various genotypes of the coral endosymbiont Symbiodinium sp. (Dinophyceae)
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Heat stress: an overview of molecular responses in photosynthesis
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Effects of ultraviolet (UV) radiation on marine microalgal-invertebrate symbioses. I. Response of the algal symbionts in culture an in hospite
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The relation of recombination to mutational advance
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LTR retrotransposons, handy hitchhikers of plant regulation and stress response
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Molecular cloning of Rab5 (ApRab5) in Aiptasia pulchella and its retention in phagosomes harboring live zooxanthellae
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ApRab11, a cnidarian homologue of the recycling regulatory protein Rab11, is involved in the establishment and maintenance of the Aiptasia–Symbiodinium endosymbiosis
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Draft Assembly of the Symbiodinium minutum Nuclear Genome Reveals Dinoflagellate Gene Structure
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Systematic Revision of Symbiodiniaceae Highlights the Antiquity and Diversity of Coral Endosymbionts
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The major Arabidopsis thaliana apurinic/apyrimidinic endonuclease, ARP is involved in the plant nucleotide incision repair pathway
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Methods for sampling free-living Symbiodinium (zooxanthellae) and their distribution and abundance at Lizard Island (Great Barrier Reef)
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Triggers and tricks of Plasmodium sexual development
inferredcites →https://doi.org/10.1016/j.ppees.2006.04.001openalex-snapshot
The evolutionary history of Symbiodinium and scleractinian hosts—Symbiosis, diversity, and the effect of climate change
inferredcites →https://doi.org/10.1016/j.resmic.2011.04.006openalex-snapshot
Genomic understanding of dinoflagellates
inferredcites →https://doi.org/10.1016/j.tplants.2012.01.009openalex-snapshot
Anion channels: master switches of stress responses
inferredcites →https://doi.org/10.1016/j.tplants.2014.06.007openalex-snapshot
Nutrient transfer in plant–fungal symbioses
inferredcites →https://doi.org/10.1016/s0006-291x(03)01428-1openalex-snapshot
Molecular identification of Rab7 (ApRab7) in Aiptasia pulchella and its exclusion from phagosomes harboring zooxanthellae
inferredcites →https://doi.org/10.1016/s0020-7519(01)00257-0openalex-snapshot
Microneme proteins: structural and functional requirements to promote adhesion and invasion by the apicomplexan parasite Toxoplasma gondii
inferredcites →https://doi.org/10.1016/s0040-4039(01)88918-8openalex-snapshot
The occurrence of two new prostaglandin derivatives (15-epi-PGA2 and its acetate, methyl ester) in the Gorgonian Chemistry of Coelenterates. XV.
inferredcites →https://doi.org/10.1016/s0378-1119(97)00405-8openalex-snapshot
Evolution of sex and the molecular clock in RNA viruses
inferredcites →https://doi.org/10.1016/s0966-842x(98)01312-2openalex-snapshot
Reductive evolution of resident genomes
inferredcites →https://doi.org/10.1016/s1360-1385(98)01232-1openalex-snapshot
Activation of plant retrotransposons under stress conditions
inferredcites →https://doi.org/10.1038/35048564openalex-snapshot
Fluorescent pigments in corals are photoprotective
inferredcites →https://doi.org/10.1038/35081151openalex-snapshot
Reef corals bleach to survive change
inferredcites →https://doi.org/10.1038/430742aopenalex-snapshot
Thermal adaptation in reef coral symbionts
inferredcites →https://doi.org/10.1038/ismej.2011.196openalex-snapshot
A single-cell view of ammonium assimilation in coral–dinoflagellate symbiosis
inferredcites →https://doi.org/10.1038/ismej.2016.154openalex-snapshot
Evidence for a role of viruses in the thermal sensitivity of coral photosymbionts
inferredcites →https://doi.org/10.1038/ismej.2017.179openalex-snapshot
Recent expansion of heat-activated retrotransposons in the coral symbiont Symbiodinium microadriaticum
inferredcites →https://doi.org/10.1038/nature21707openalex-snapshot
Global warming and recurrent mass bleaching of corals
inferredcites →https://doi.org/10.1038/nbt.1883openalex-snapshot
Full-length transcriptome assembly from RNA-Seq data without a reference genome
inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot
Fast gapped-read alignment with Bowtie 2
inferredcites →https://doi.org/10.1038/nmeth.3176openalex-snapshot
Fast and sensitive protein alignment using DIAMOND
inferredcites →https://doi.org/10.1038/nmeth.3317openalex-snapshot
HISAT: a fast spliced aligner with low memory requirements
inferredcites →https://doi.org/10.1038/nmeth.4197openalex-snapshot
Salmon provides fast and bias-aware quantification of transcript expression
inferredcites →https://doi.org/10.1038/nrg2319openalex-snapshot
Learning how to live together: genomic insights into prokaryote–animal symbioses
inferredcites →https://doi.org/10.1038/nrmicro2670openalex-snapshot
Extreme genome reduction in symbiotic bacteria
inferredcites →https://doi.org/10.1038/nsmb.3216openalex-snapshot
Mechanistic diversity in ATP-binding cassette (ABC) transporters
inferredcites →https://doi.org/10.1038/s41559-017-0313-5openalex-snapshot
New interventions are needed to save coral reefs
inferredcites →https://doi.org/10.1038/s42003-018-0098-3openalex-snapshot
Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis
inferredcites →https://doi.org/10.1038/srep39734openalex-snapshot
Genomes of coral dinoflagellate symbionts highlight evolutionary adaptations conducive to a symbiotic lifestyle
inferredcites →https://doi.org/10.1046/j.1529-8817.1998.340152.xopenalex-snapshot
HYPERMETHYLATION AT CPG‐MOTIFS IN THE DINOFLAGELLATES AMPHIDINIUM CARTERAE (DINOPHYCEAE) AND SYMBIODINIUM MICROADRIATICUM (DINOPHYCEAE): EVIDENCE FROM RESTRICTION ANALYSES, 5‐AZACYTIDINE AND ETHIONINE TREATMENT
inferredcites →https://doi.org/10.1046/j.1529-8817.2000.00010.xopenalex-snapshot
CONSPECIFICITY AND INDO‐PACIFIC DISTRIBUTION OF SYMBIODINIUM GENOTYPES (DINOPHYCEAE) FROM GIANT CLAMS
inferredcites →https://doi.org/10.1046/j.1529-8817.2001.01031.xopenalex-snapshot
INVESTIGATING THE BIODIVERSITY, ECOLOGY, AND PHYLOGENY OF ENDOSYMBIOTIC DINOFLAGELLATES IN THE GENUS SYMBIODINIUM USING THE ITS REGION: IN SEARCH OF A “SPECIES” LEVEL MARKER
inferredcites →https://doi.org/10.1071/mf99078openalex-snapshot
Climate change, coral bleaching and the future of the world's coral reefs
inferredcites →https://doi.org/10.1073/pnas.0402907101openalex-snapshot
Membrane lipids of symbiotic algae are diagnostic of sensitivity to thermal bleaching in corals
inferredcites →https://doi.org/10.1073/pnas.0700258104openalex-snapshot
Spliced leader RNA trans-splicing in dinoflagellates
inferredcites →https://doi.org/10.1073/pnas.1106924108openalex-snapshot
Apoptosis and the selective survival of host animals following thermal bleaching in zooxanthellate corals
inferredcites →https://doi.org/10.1073/pnas.131022398openalex-snapshot
The origin of 15 R -prostaglandins in the Caribbean coral Plexaura homomalla : Molecular cloning and expression of a novel cyclooxygenase
inferredcites →https://doi.org/10.1073/pnas.1502283112openalex-snapshot
Microbial invasion of the Caribbean by an Indo-Pacific coral zooxanthella
inferredcites →https://doi.org/10.1073/pnas.1710733114openalex-snapshot
Optimal nutrient exchange and immune responses operate in partner specificity in the cnidarian-dinoflagellate symbiosis
inferredcites →https://doi.org/10.1074/jbc.m008294200openalex-snapshot
The Toxoplasma Micronemal Protein MIC4 Is an Adhesin Composed of Six Conserved Apple Domains
inferredcites →https://doi.org/10.1074/jbc.m109.060988openalex-snapshot
Members of a Novel Protein Family Containing Microneme Adhesive Repeat Domains Act as Sialic Acid-binding Lectins during Host Cell Invasion by Apicomplexan Parasites
inferredcites →https://doi.org/10.1086/303396openalex-snapshot
Accumulation of Deleterious Mutations in Endosymbionts: Muller’s Ratchet with Two Levels of Selection
inferredcites →https://doi.org/10.1093/bioinformatics/bti610openalex-snapshot
Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
inferredcites →https://doi.org/10.1093/bioinformatics/btp616openalex-snapshot
edgeR : a Bioconductor package for differential expression analysis of digital gene expression data
inferredcites →https://doi.org/10.1093/bioinformatics/btq461openalex-snapshot
Search and clustering orders of magnitude faster than BLAST
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/genetics/78.2.737openalex-snapshot
THE EVOLUTIONARY ADVANTAGE OF RECOMBINATION
inferredcites →https://doi.org/10.1093/molbev/msu107openalex-snapshot
Lineage-Specific Transcriptional Profiles of Symbiodinium spp. Unaltered by Heat Stress in a Coral Host
inferredcites →https://doi.org/10.1093/molbev/msw119openalex-snapshot
Sex, Scavengers, and Chaperones: Transcriptome Secrets of DivergentSymbiodiniumThermal Tolerances
inferredcites →https://doi.org/10.1093/nar/gki408openalex-snapshot
The HHpred interactive server for protein homology detection and structure prediction
inferredcites →https://doi.org/10.1093/nar/gks1219openalex-snapshot
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
inferredcites →https://doi.org/10.1093/pcp/pch083openalex-snapshot
Overexpression of Spermidine Synthase Enhances Tolerance to Multiple Environmental Stresses and Up-Regulates the Expression of Various Stress-Regulated Genes in Transgenic Arabidopsis thaliana
inferredcites →https://doi.org/10.1098/rspb.1984.0058openalex-snapshot
Fate of photosynthetic fixed carbon in light- and shade-adapted colonies of the symbiotic coral Stylophora pistillata
inferredcites →https://doi.org/10.1098/rspb.2006.3567openalex-snapshot
The role of zooxanthellae in the thermal tolerance of corals: a ‘nugget of hope’ for coral reefs in an era of climate change
inferredcites →https://doi.org/10.1098/rspb.2008.0069openalex-snapshot
A community change in the algal endosymbionts of a scleractinian coral following a natural bleaching event: field evidence of acclimatization
inferredcites →https://doi.org/10.1098/rspb.2017.1767openalex-snapshot
Intraspecific and interspecific variation in thermotolerance and photoacclimation in Symbiodinium dinoflagellates
inferredcites →https://doi.org/10.1101/gad.10.13.1608openalex-snapshot
Regulation of mRNA export in response to stress in Saccharomyces cerevisiae.
inferredcites →https://doi.org/10.1101/gr.196469.115openalex-snapshot
TransRate: reference-free quality assessment of de novo transcriptome assemblies
inferredcites →https://doi.org/10.1111/1574-6976.12013openalex-snapshot
Subversion of host cellular functions by the apicomplexan parasites
inferredcites →https://doi.org/10.1111/gcb.13702openalex-snapshot
Rapid thermal adaptation in photosymbionts of reef‐building corals
inferredcites →https://doi.org/10.1111/j.0014-3820.2000.tb00038.xopenalex-snapshot
PERSPECTIVE: SEX, RECOMBINATION, AND THE EFFICACY OF SELECTION?WAS WEISMANN RIGHT?
inferredcites →https://doi.org/10.1111/j.1550-7408.1962.tb02579.xopenalex-snapshot
Symbiodinium gen. nov. and Symbiodinium microadriaticum sp. nov., a Zooxanthella: Taxonomy, Life Cycle, and Morphology.*
inferredcites →https://doi.org/10.1111/jeu.12230openalex-snapshot
Dinoflagellate Gene Structure and Intron Splice Sites in a Genomic Tandem Array
inferredcites →https://doi.org/10.1111/mec.14452openalex-snapshot
Evidence for mi RNA ‐mediated modulation of the host transcriptome in cnidarian–dinoflagellate symbiosis
inferredcites →https://doi.org/10.1111/tpj.12789openalex-snapshot
Symbiodinium transcriptome and global responses of cells to immediate changes in light intensity when grown under autotrophic or mixotrophic conditions
inferredcites →https://doi.org/10.1126/science.1095733openalex-snapshot
Flexibility in Algal Endosymbioses Shapes Growth in Reef Corals
inferredcites →https://doi.org/10.1126/science.3898363openalex-snapshot
Genetic Damage, Mutation, and the Evolution of Sex
inferredcites →https://doi.org/10.1126/science.aad0408openalex-snapshot
The Symbiodinium kawagutii genome illuminates dinoflagellate gene expression and coral symbiosis
inferredcites →https://doi.org/10.1128/aem.02984-09openalex-snapshot
Differential Regulation by Heat Stress of Novel Cytochrome P450 Genes from the Dinoflagellate Symbionts of Reef-Building Corals
inferredcites →https://doi.org/10.1146/annurev.ecolsys.110308.120220openalex-snapshot
Systematic and Biogeographical Patterns in the Reproductive Biology of Scleractinian Corals
inferredcites →https://doi.org/10.1146/annurev.ecolsys.34.011802.132417openalex-snapshot
Flexibility and Specificity in Coral-Algal Symbiosis: Diversity, Ecology, and Biogeography of Symbiodinium
inferredcites →https://doi.org/10.1146/annurev.ph.57.030195.000315openalex-snapshot
Thermal Adaptation in Biological Membranes: Is Homeoviscous Adaptation the Explanation?
inferredcites →https://doi.org/10.1155/2011/185890openalex-snapshot
Tradeoffs to Thermal Acclimation: Energetics and Reproduction of a Reef Coral with Heat Tolerant Symbiodinium Type-D
inferredcites →https://doi.org/10.1186/1471-2164-10-624openalex-snapshot
Potential impact of stress activated retrotransposons on genome evolution in a marine diatom
inferredcites →https://doi.org/10.1186/1471-2164-14-704openalex-snapshot
Integrating microRNA and mRNA expression profiling in Symbiodinium microadriaticum, a dinoflagellate symbiont of reef-building corals
inferredcites →https://doi.org/10.1186/1471-2164-7-23openalex-snapshot
Transcriptome analysis of a cnidarian – dinoflagellate mutualism reveals complex modulation of host gene expression
inferredcites →https://doi.org/10.1186/1475-2875-3-24openalex-snapshot
Gametocytogenesis: the puberty of Plasmodium falciparum.
inferredcites →https://doi.org/10.1186/gb-2014-15-3-r46openalex-snapshot
Kraken: ultrafast metagenomic sequence classification using exact alignments
inferredcites →https://doi.org/10.1242/jeb.009597openalex-snapshot
Cellular mechanisms of Cnidarian bleaching: stress causes the collapse of symbiosis
inferredcites →https://doi.org/10.1242/jeb.148239openalex-snapshot
Tenacious D: Symbiodinium in clade D remain in reef corals at both high and low temperature extremes despite impairment
inferredcites →https://doi.org/10.12703/p7-14openalex-snapshot
Structure and mechanism of ABC transporters
inferredcites →https://doi.org/10.1371/journal.pgen.1006619openalex-snapshot
Condition-specific RNA editing in the coral symbiont Symbiodinium microadriaticum
inferredcites →https://doi.org/10.1371/journal.pone.0021800openalex-snapshot
REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms
inferredcites →https://doi.org/10.1371/journal.ppat.1003344openalex-snapshot
Malaria Parasite cGMP-dependent Protein Kinase Regulates Blood Stage Merozoite Secretory Organelle Discharge and Egress
inferredcites →https://doi.org/10.2307/1543491openalex-snapshot
Molecular Genetic Evidence that Dinoflagellates Belonging to the GenusSymbiodiniumFreudenthal Are Haploid
inferredcites →https://doi.org/10.3354/meps060185openalex-snapshot
Reproduction and recruitment of corals: comparisons among the Caribbean, the Tropical Pacific, and the Red Sea
inferredcites →https://doi.org/10.3389/fmars.2018.00011openalex-snapshot
Trade-Offs Associated with Photoprotective Green Fluorescent Protein Expression as Potential Drivers of Balancing Selection for Color Polymorphism in Reef Corals
inferredcites →https://doi.org/10.3389/fmars.2018.00160openalex-snapshot
Interspecific Hybridization May Provide Novel Opportunities for Coral Reef Restoration
inferredcites →https://doi.org/10.3389/fmicb.2012.00316openalex-snapshot
Light gradients and optical microniches in coral tissues
inferredcites →https://doi.org/10.3389/fmicb.2014.00742openalex-snapshot
Evolution of small prokaryotic genomes
inferredcites →https://doi.org/10.3389/fmicb.2015.00742openalex-snapshot
NADPH-generating systems in bacteria and archaea
inferredcites →https://doi.org/10.3389/fmicb.2017.01220openalex-snapshot
Engineering Strategies to Decode and Enhance the Genomes of Coral Symbionts
inferredcites →https://doi.org/10.3389/fpls.2012.00263openalex-snapshot
Molecular Evolution of Slow and Quick Anion Channels (SLACs and QUACs/ALMTs)
inferredcites →https://doi.org/10.3389/fpls.2017.00271openalex-snapshot
Transcriptomic Analysis of Thermally Stressed Symbiodinium Reveals Differential Expression of Stress and Metabolism Genes
inferredcites →https://doi.org/10.4319/lo.2005.50.4.1025openalex-snapshot
Multiple scattering on coral skeletons enhances light absorption by symbiotic algae
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1002/ece3.5910openalex-snapshot
Symbiotic lifestyle triggers drastic changes in the gene expression of the algal endosymbiont Breviolum minutum (Symbiodiniaceae)
inferred← citeshttps://doi.org/10.1007/s00338-020-01902-0openalex-snapshot
The contribution of stress-tolerant endosymbiotic dinoflagellate Durusdinium to Pocillopora acuta survival in a highly urbanized reef system
inferred← citeshttps://doi.org/10.1038/s42003-025-08182-wopenalex-snapshot
Inhibiting inositol transport disrupts metabolite profiles and mimics heat stress in a model cnidarian-Symbiodiniaceae symbiosis
inferred← citeshttps://doi.org/10.1101/652131openalex-snapshot
Transcriptomic insights into the establishment of coral-algal symbioses from the symbiont perspective
inferred← citeshttps://doi.org/10.1111/mec.15612openalex-snapshot
Dual RNA‐sequencing analyses of a coral and its native symbiont during the establishment of symbiosis
inferred← citeshttps://doi.org/10.1186/s12915-022-01371-7openalex-snapshot
Frontloading of stress response genes enhances robustness to environmental change in chimeric corals
inferred← citeshttps://doi.org/10.3389/fmicb.2022.1094255openalex-snapshot
Genomic conservation and putative downstream functionality of the phosphatidylinositol signalling pathway in the cnidarian-dinoflagellate symbiosis
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