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Transcriptomic insights into the establishment of coral-algal symbioses from the symbiont perspective

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/bies.201300037openalex-snapshot

Genome reduction as the dominant mode of evolution

inferredcites →https://doi.org/10.1002/pmic.200900595openalex-snapshot

Proteomic analysis of symbiosome membranes in Cnidaria–dinoflagellate endosymbiosis

inferredcites →https://doi.org/10.1007/s002270050133openalex-snapshot

Effects of host-tissue homogenate of the scleractinian coral Plesiastrea versipora on glycerol metabolism in isolated symbiotic dinoflagellates

inferredcites →https://doi.org/10.1007/s00338-012-0951-7openalex-snapshot

The promiscuous larvae: flexibility in the establishment of symbiosis in corals

inferredcites →https://doi.org/10.1016/j.bmc.2010.01.059openalex-snapshot

Carbonic anhydrase activators. The first activation study of a coral secretory isoform with amino acids and amines

inferredcites →https://doi.org/10.1016/j.cub.2013.05.062openalex-snapshot

Draft Assembly of the Symbiodinium minutum Nuclear Genome Reveals Dinoflagellate Gene Structure

inferredcites →https://doi.org/10.1016/j.cub.2018.07.008openalex-snapshot

Systematic Revision of Symbiodiniaceae Highlights the Antiquity and Diversity of Coral Endosymbionts

inferredcites →https://doi.org/10.1016/j.jembe.2008.06.034openalex-snapshot

Methods for sampling free-living Symbiodinium (zooxanthellae) and their distribution and abundance at Lizard Island (Great Barrier Reef)

inferredcites →https://doi.org/10.1016/j.margen.2010.08.002openalex-snapshot

Coral larvae exhibit few measurable transcriptional changes during the onset of coral-dinoflagellate endosymbiosis

inferredcites →https://doi.org/10.1016/j.tree.2008.03.004openalex-snapshot

Cell biology in model systems as the key to understanding corals

inferredcites →https://doi.org/10.1016/s1096-4959(03)00118-0openalex-snapshot

Symbiotic zooxanthellae provide the host-coral Montipora digitata with polyunsaturated fatty acids

inferredcites →https://doi.org/10.1023/a:1021833821493openalex-snapshot

Reef-Building Corals—Symbiotic Autotrophic Organisms: 2. Pathways and Mechanisms of Adaptation to Light

inferredcites →https://doi.org/10.1038/ismej.2010.74openalex-snapshot

Functional genomic signatures of sponge bacteria reveal unique and shared features of symbiosis

inferredcites →https://doi.org/10.1038/ismej.2011.196openalex-snapshot

A single-cell view of ammonium assimilation in coral–dinoflagellate symbiosis

inferredcites →https://doi.org/10.1038/nature10249openalex-snapshot

Using the Acropora digitifera genome to understand coral responses to environmental change

inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot

Fast gapped-read alignment with Bowtie 2

inferredcites →https://doi.org/10.1038/nprot.2013.084openalex-snapshot

De novo transcript sequence reconstruction from RNA-Seq: reference generation and analysis with Trinity

inferredcites →https://doi.org/10.1038/s41396-017-0005-9openalex-snapshot

Deciphering the nature of the coral–Chromeraassociation

inferredcites →https://doi.org/10.1038/s41467-019-08349-0openalex-snapshot

Dual RNA-seq identifies human mucosal immunity protein Mucin-13 as a hallmark of Plasmodium exoerythrocytic infection

inferredcites →https://doi.org/10.1038/srep19867openalex-snapshot

Development and Symbiosis Establishment in the Cnidarian Endosymbiosis Model Aiptasia sp.

inferredcites →https://doi.org/10.1038/srep32366openalex-snapshot

Aiptasia sp. larvae as a model to reveal mechanisms of symbiont selection in cnidarians

inferredcites →https://doi.org/10.1038/srep39734openalex-snapshot

Genomes of coral dinoflagellate symbionts highlight evolutionary adaptations conducive to a symbiotic lifestyle

inferredcites →https://doi.org/10.1046/j.0016-8025.2003.01111.xopenalex-snapshot

The impact of bleaching on the metabolic contribution of dinoflagellate symbionts to their giant clam host

inferredcites →https://doi.org/10.1073/pnas.1613405114openalex-snapshot

Tissue dual RNA-seq allows fast discovery of infection-specific functions and riboregulators shaping host–pathogen transcriptomes

inferredcites →https://doi.org/10.1073/pnas.1710733114openalex-snapshot

Optimal nutrient exchange and immune responses operate in partner specificity in the cnidarian-dinoflagellate symbiosis

inferredcites →https://doi.org/10.1093/bioinformatics/btp616openalex-snapshot

edgeR : a Bioconductor package for differential expression analysis of digital gene expression data

inferredcites →https://doi.org/10.1093/gbe/evy255openalex-snapshot

Genome Reduction in the Mosquito SymbiontAsaia

inferredcites →https://doi.org/10.1093/molbev/msw119openalex-snapshot

Sex, Scavengers, and Chaperones: Transcriptome Secrets of DivergentSymbiodiniumThermal Tolerances

inferredcites →https://doi.org/10.1098/rsos.170253openalex-snapshot

Expression of a symbiosis-specific gene in Symbiodinium type A1 associated with coral, nudibranch and giant clam larvae

inferredcites →https://doi.org/10.1101/508184openalex-snapshot

Transcriptome landscape of a thermal-tolerant coral endosymbiont reveals molecular signatures of symbiosis and dysbiosis

inferredcites →https://doi.org/10.1111/j.1365-294x.2009.04167.xopenalex-snapshot

The host transcriptome remains unaltered during the establishment of coral–algal symbioses

inferredcites →https://doi.org/10.1111/j.1462-5822.2006.00765.xopenalex-snapshot

Lectin/glycan interactions play a role in recognition in a coral/dinoflagellate symbiosis

inferredcites →https://doi.org/10.1111/mec.12384openalex-snapshot

Ankyrin‐repeat proteins from sponge symbionts modulate amoebal phagocytosis

inferredcites →https://doi.org/10.1111/mec.13328openalex-snapshot

Transcriptomic differences between day and night in Acropora millepora provide new insights into metabolite exchange and light‐enhanced calcification in corals

inferredcites →https://doi.org/10.1111/mec.13659openalex-snapshot

The transcriptomic response of the coral Acropora digitifera to a competent Symbiodinium strain: the symbiosome as an arrested early phagosome

inferredcites →https://doi.org/10.1111/mec.14967openalex-snapshot

Acquisition of obligate mutualist symbionts during the larval stage is not beneficial for a coral host

inferredcites →https://doi.org/10.1111/nph.14515openalex-snapshot

Mapping carbon fate during bleaching in a model cnidarian symbiosis: the application of 13C metabolomics

inferredcites →https://doi.org/10.1126/sciadv.1500681openalex-snapshot

Nutritional input from dinoflagellate symbionts in reef-building corals is minimal during planula larval life stage

inferredcites →https://doi.org/10.1126/science.291.5511.2138openalex-snapshot

Arabidopsis NPL1: A Phototropin Homolog Controlling the Chloroplast High-Light Avoidance Response

inferredcites →https://doi.org/10.1126/science.aad0408openalex-snapshot

The Symbiodinium kawagutii genome illuminates dinoflagellate gene expression and coral symbiosis

inferredcites →https://doi.org/10.1128/mmbr.05014-11openalex-snapshot

Cell Biology of Cnidarian-Dinoflagellate Symbiosis

inferredcites →https://doi.org/10.1139/b98-086openalex-snapshot

Mechanisms of carbon acquisition for endosymbiont photosynthesis in Anthozoa

inferredcites →https://doi.org/10.1146/annurev.pp.30.060179.002413openalex-snapshot

The Cell Biology of Plant-Animal Symbiosis

inferredcites →https://doi.org/10.1186/1471-2105-12-323openalex-snapshot

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

inferredcites →https://doi.org/10.1186/1471-2164-15-1052openalex-snapshot

Early transcriptional changes in the reef-building coral Acropora aspera in response to thermal and nutrient stress

inferredcites →https://doi.org/10.1186/gb-2010-11-3-r25openalex-snapshot

A scaling normalization method for differential expression analysis of RNA-seq data

inferredcites →https://doi.org/10.1186/s12864-018-4857-9openalex-snapshot

Two divergent Symbiodinium genomes reveal conservation of a gene cluster for sunscreen biosynthesis and recently lost genes

inferredcites →https://doi.org/10.1186/s12866-016-0721-8openalex-snapshot

Deep divergence and rapid evolutionary rates in gut-associated Acetobacteraceae of ants

inferredcites →https://doi.org/10.1186/s13059-018-1552-8openalex-snapshot

Comparative genomics reveals the distinct evolutionary trajectories of the robust and complex coral lineages

inferredcites →https://doi.org/10.1242/bio.038281openalex-snapshot

Transcriptomic analyses highlight the likely metabolic consequences of colonization of a cnidarian host by native or non-native Symbiodinium species

inferredcites →https://doi.org/10.1242/jeb.070946openalex-snapshot

Evidence that glucose is the major transferred metabolite in dinoflagellate–cnidarian symbiosis

inferredcites →https://doi.org/10.1371/journal.pntd.0002905openalex-snapshot

Dual RNA-seq of Parasite and Host Reveals Gene Expression Dynamics during Filarial Worm–Mosquito Interactions

inferredcites →https://doi.org/10.1371/journal.pone.0085182openalex-snapshot

A Snapshot of a Coral “Holobiont”: A Transcriptome Assembly of the Scleractinian Coral, Porites, Captures a Wide Variety of Genes from Both the Host and Symbiotic Zooxanthellae

inferredcites →https://doi.org/10.2119/molmed.2011.00183openalex-snapshot

The Interaction of ApoA-I and ABCA1 Triggers Signal Transduction Pathways to Mediate Efflux of Cellular Lipids

inferredcites →https://doi.org/10.3354/meps07114openalex-snapshot

Temporal changes in settlement, lipid content and lipid composition of larvae of the spawning hermatypic coral Acropora tenuis

inferredcites →https://doi.org/10.3354/meps07834openalex-snapshot

Exposure to sediment enhances primary acquisition of Symbiodinium by asymbiotic coral larvae

inferredcites →https://doi.org/10.3389/fevo.2017.00056openalex-snapshot

Marine Invertebrate Larvae Associated with Symbiodinium: A Mutualism from the Start?

inferredcites →https://doi.org/10.3389/fmicb.2018.00842openalex-snapshot

Subtle Differences in Symbiont Cell Surface Glycan Profiles Do Not Explain Species-Specific Colonization Rates in a Model Cnidarian-Algal Symbiosis

inferredcites →https://doi.org/10.3389/fphys.2014.00056openalex-snapshot

A quantitative perspective to the study of brain arterial remodeling of donors with and without HIV in the Brain Arterial Remodeling Study (BARS)

inferredcites →https://doi.org/10.3389/fphys.2018.00214openalex-snapshot

Using Aiptasia as a Model to Study Metabolic Interactions in Cnidarian-Symbiodinium Symbioses

inferredcites →https://doi.org/10.7717/peerj.264openalex-snapshot

Ankyrin domains across the Tree of Life

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/ece3.5712openalex-snapshot

Feeding increases the number of offspring but decreases parental investment of Red Sea coral Stylophora pistillata

inferred← citeshttps://doi.org/10.1002/ece3.5910openalex-snapshot

Symbiotic lifestyle triggers drastic changes in the gene expression of the algal endosymbiont Breviolum minutum (Symbiodiniaceae)

inferred← citeshttps://doi.org/10.1007/s00338-020-01902-0openalex-snapshot

The contribution of stress-tolerant endosymbiotic dinoflagellate Durusdinium to Pocillopora acuta survival in a highly urbanized reef system

inferred← citeshttps://doi.org/10.1016/j.cell.2021.04.005openalex-snapshot

A stony coral cell atlas illuminates the molecular and cellular basis of coral symbiosis, calcification, and immunity

inferred← citeshttps://doi.org/10.1101/783902openalex-snapshot

Structural rearrangements drive extensive genome divergence between symbiotic and free-living Symbiodinium

inferred← citeshttps://doi.org/10.1101/825992openalex-snapshot

Close relationship between coral-associated Chromera strains despite major differences within the Symbiodiniaceae

inferred← citeshttps://doi.org/10.1111/1758-2229.12859openalex-snapshot

Comparative transcriptomic analyses of Chromera and Symbiodiniaceae

inferred← citeshttps://doi.org/10.1186/s12915-021-00994-6openalex-snapshot

Comparison of 15 dinoflagellate genomes reveals extensive sequence and structural divergence in family Symbiodiniaceae and genus Symbiodinium

inferred← citeshttps://doi.org/10.3389/fmicb.2020.532447openalex-snapshot

Impact of Ocean Warming and Acidification on Symbiosis Establishment and Gene Expression Profiles in Recruits of Reef Coral Acropora intermedia

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