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A stress response that allows highly mutated eukaryotic cells to survive and proliferate

https://doi.org/10.1101/515460
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Under cover: causes, effects and implications of Hsp90‐mediated genetic capacitance
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New functions of protein kinase Gcn2 in yeast and mammals
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The UGA3 gene regulating the GABA catabolic pathway in Saccharomyces cerevisiae codes for a putative zinc-finger protein acting on RNA amount
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Isolation and molecular analysis of the orotidine-5′-phosphate decarboxylase gene (pyrG) of Phycomyces blakesleeanus
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A DNA fragment containing the groE genes can suppress mutations in the Escherichia coli dnaA gene
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Synthesis of glutamine, glycine and 10-formyl tetrahydrofolate is coregulated with purine biosynthesis in Saccharomyces cerevisiae
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Yeast and Cancer
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Hsp90
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Mistranslation-Induced Protein Misfolding as a Dominant Constraint on Coding-Sequence Evolution
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A Quantitative Chaperone Interaction Network Reveals the Architecture of Cellular Protein Homeostasis Pathways
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A Landscape of Pharmacogenomic Interactions in Cancer
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Development of a Comprehensive Genotype-to-Fitness Map of Adaptation-Driving Mutations in Yeast
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HSP90 Shapes the Consequences of Human Genetic Variation
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Comprehensive Analysis of Hypermutation in Human Cancer
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Evolvability
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Oncogenic Mutations Reduce the Stability of Src Kinase
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An error catastrophe in cancer?
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Effects of the IMP-dehydrogenase inhibitor, Tiazofurin, in bcr-abl positive acute myelogenous leukemia
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Effects of the IMP-dehydrogenase inhibitor, Tiazofurin, in bcr-abl positive acute myelogenous leukemia
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Division of Labor at the Eukaryotic Replication Fork
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Differentiating mechanisms of toxicity using global gene expression analysis in Saccharomyces cerevisiae
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UALCAN: A Portal for Facilitating Tumor Subgroup Gene Expression and Survival Analyses
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Stability effects of mutations and protein evolvability
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It’s not magic – Hsp90 and its effects on genetic and epigenetic variation
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Surviving Stress: Modulation of ATF4-Mediated Stress Responses in Normal and Malignant Cells
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Concepts in solid tumor evolution
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Stability and the Evolvability of Function in a Model Protein
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Bafilomycin A1, a specific inhibitor of vacuolar-type H(+)-ATPase, inhibits acidification and protein degradation in lysosomes of cultured cells.
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DNA damage and stress transcripts in Saccharomyces cerevisiae Mutant sgs1
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Functional and Genomic Analyses Reveal an Essential Coordination between the Unfolded Protein Response and ER-Associated Degradation
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Argininosuccinate Synthase 1 is a Metabolic Regulator of Colorectal Cancer Pathogenicity
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Inhibition of IMPDH by Mycophenolic Acid: Dissection of Forward and Reverse Pathways Using Capillary Electrophoresis
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Genome complexity, robustness and genetic interactions in digital organisms
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Hsp90 as a capacitor for morphological evolution
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Demonstration by genetic suppression of interaction of GroE products with many proteins
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Test of synergistic interactions among deleterious mutations in bacteria
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GroEL buffers against deleterious mutations
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Evolution of high mutation rates in experimental populations of E. coli
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Combined mismatch repair and POLE/POLD1 defects explain unresolved suspected Lynch syndrome cancers
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DNA replication stress differentially regulates G1/S genes via Rad53‐dependent inactivation of Nrm1
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Unraveling condition‐dependent networks of transcription factors that control metabolic pathway activity in yeast
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Functional profiling of the Saccharomyces cerevisiae genome
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Population genomics of domestic and wild yeasts
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Predicting mutation outcome from early stochastic variation in genetic interaction partners
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The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity
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Comprehensive molecular characterization of human colon and rectal cancer
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Mutational heterogeneity in cancer and the search for new cancer-associated genes
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Signatures of mutational processes in human cancer
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Differential DNA mismatch repair underlies mutation rate variation across the human genome
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Hsp90 as a capacitor of phenotypic variation
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Between-region genetic divergence reflects the mode and tempo of tumor evolution
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Genomic buffering mitigates the effects of deleterious mutations in bacteria
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Genetic reconstruction of a functional transcriptional regulatory network
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Fast gapped-read alignment with Bowtie 2
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TCGA-Assembler: open-source software for retrieving and processing TCGA data
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Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm
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Targeting autophagy in cancer
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HSP90 and the chaperoning of cancer
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MYB function in normal and cancer cells
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Hypermutation in human cancer genomes: footprints and mechanisms
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Milestones of Lynch syndrome: 1895–2015
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Microsatellite instability in colorectal cancer—the stable evidence
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The distribution of fitness effects of new mutations
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Genome dynamics during experimental evolution
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HSP90 at the hub of protein homeostasis: emerging mechanistic insights
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Modelling neurodegeneration in Saccharomyces cerevisiae: why cook with baker's yeast?
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High expression of IMPDH2 is associated with aggressive features and poor prognosis of primary nasopharyngeal carcinoma
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Role of the Myb‐like protein Bas1p in Saccharomyces cerevisiae: a proteome analysis
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Why highly expressed proteins evolve slowly
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Human cancers express a mutator phenotype
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HSP90-buffered genetic variation is common in Arabidopsis thaliana
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A genome-wide view of Caenorhabditis elegans base-substitution mutation processes
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High levels of nuclear heat-shock factor 1 (HSF1) are associated with poor prognosis in breast cancer
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Ume6 transcription factor is part of a signaling cascade that regulates autophagy
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Mutation rate dynamics in a bacterial population reflect tension between adaptation and genetic load
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Mutational landscape of yeast mutator strains
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Precise estimates of mutation rate and spectrum in yeast
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HSP90 empowers evolution of resistance to hormonal therapy in human breast cancer models
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Error catastrophe and antiviral strategy
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Coregulation of purine and histidine biosynthesis by the transcriptional activators BAS1 and BAS2.
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Heat-shock protein hsp90 governs the activity of pp60v-src kinase.
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Accelerated evolution and Muller's rachet in endosymbiotic bacteria.
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Inefficient Proofreading and Biased Error Rates during Inaccurate DNA Synthesis by a Mutant Derivative of Saccharomyces cerevisiae DNA Polymerase δ
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Identification of Histone Demethylases in Saccharomyces cerevisiae
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Mutation as a Stress Response and the Regulation of Evolvability
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Mendelian Inheritance in Man and Its Online Version, OMIM
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Genomic Expression Programs in the Response of Yeast Cells to Environmental Changes
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Genomic Expression Responses to DNA-damaging Agents and the Regulatory Role of the Yeast ATR Homolog Mec1p
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Coordination of Growth Rate, Cell Cycle, Stress Response, and Metabolic Activity in Yeast
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Open source clustering software
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Exploring the functional landscape of gene expression: directed search of large microarray compendia
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HTSeq—a Python framework to work with high-throughput sequencing data
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The Molecular Chaperone DnaK Is a Source of Mutational Robustness
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Adaptive reversion of a frameshift mutation in Escherichia coli.
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A High-Definition View of Functional Genetic Variation from Natural Yeast Genomes
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A Comprehensive, High-Resolution Map of a Gene’s Fitness Landscape
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Fitness Trade-Offs Determine the Role of the Molecular Chaperonin GroEL in Buffering Mutations
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Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes
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BioNumbers—the database of key numbers in molecular and cell biology
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Saccharomyces Genome Database: the genomics resource of budding yeast
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STRING v10: protein–protein interaction networks, integrated over the tree of life
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JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework
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kpLogo: positional k-mer analysis reveals hidden specificity in biological sequences
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The Evolution of the Heat-Shock Protein GroEL from Buchnera, the Primary Endosymbiont of Aphids, Is Governed by Positive Selection
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The causes of epistasis
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Principal component analysis: a review and recent developments
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Hypermutable bacteria isolated from humans – a critical analysis
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The Origins and Consequences of Localized and Global Somatic Hypermutation
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HSP90 buffers newly induced mutations in massively mutated plant lines
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The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
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Heterogeneous polymerase fidelity and mismatch repair bias genome variation and composition
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Germline mutation rates and the long-term phenotypic effects of mutation accumulation in wild-type laboratory mice and mutator mice
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Hsp90 Potentiates the Rapid Evolution of New Traits: Drug Resistance in Diverse Fungi
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The Rate and Molecular Spectrum of Spontaneous Mutations in Arabidopsis thaliana
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The Genetic Landscape of a Cell
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Hsp90 and Environmental Stress Transform the Adaptive Value of Natural Genetic Variation
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Cryptic Variation in Morphological Evolution: HSP90 as a Capacitor for Loss of Eyes in Cavefish
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BAS1 Has a Myb Motif and Activates HIS4 Transcription Only in Combination with BAS2
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High Frequency of Hypermutable Pseudomonas aeruginosa in Cystic Fibrosis Lung Infection
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Multiple Global Regulators Control HIS4 transcription in Yeast
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A global genetic interaction network maps a wiring diagram of cellular function
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Tumor aneuploidy correlates with markers of immune evasion and with reduced response to immunotherapy
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Transcriptional Profiling Shows that Gcn4p Is a Master Regulator of Gene Expression during Amino Acid Starvation in Yeast
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Identification of the Sin3-Binding Site in Ume6 Defines a Two-Step Process for Conversion of Ume6 from a Transcriptional Repressor to an Activator in Yeast
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Expression of Rous sarcoma virus transforming protein pp60v-src in Saccharomyces cerevisiae cells.
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Structure and Mechanism in Protein Science
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HSP90: Enabler of Cancer Adaptation
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GENETIC ANALYSIS OF PROTEIN STABILITY AND FUNCTION
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THE UNIVERSALLY CONSERVED GroE (Hsp60) CHAPERONINS
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The Damaging Effect of Passenger Mutations on Cancer Progression
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Human Cancers Express a Mutator Phenotype: Hypothesis, Origin, and Consequences
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Genomic Instability in Cancer: Teetering on the Limit of Tolerance
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Genomic Analysis of Nasopharyngeal Carcinoma Reveals TME-Based Subtypes
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Domain enhanced lookup time accelerated BLAST
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The nuclear localization of SWI/SNF proteins is subjected to oxygen regulation
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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
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Selection Transforms the Landscape of Genetic Variation Interacting with Hsp90
inferredcites →https://doi.org/10.1371/journal.pgen.1002282openalex-snapshot
Mutator Suppression and Escape from Replication Error–Induced Extinction in Yeast
inferredcites →https://doi.org/10.1371/journal.pone.0000648openalex-snapshot
Phenotypic Diversity and Altered Environmental Plasticity in Arabidopsis thaliana with Reduced Hsp90 Levels
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Heat shock proteins in cancer: diagnostic, prognostic, predictive, and treatment implications
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oPOSSUM-3: Advanced Analysis of Regulatory Motif Over-Representation Across Genes or ChIP-Seq Datasets
inferredcites →https://doi.org/10.1534/g3.113.008995openalex-snapshot
The Reference Genome Sequence ofSaccharomyces cerevisiae: Then and Now
inferredcites →https://doi.org/10.1534/genetics.104.040295openalex-snapshot
Sensitivity to Phosphonoacetic Acid
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Transcriptional Regulation inSaccharomyces cerevisiae: Transcription Factor Regulation and Function, Mechanisms of Initiation, and Roles of Activators and Coactivators
inferredcites →https://doi.org/10.1534/genetics.116.198895openalex-snapshot
Experimental Evolution Reveals Favored Adaptive Routes to Cell Aggregation in Yeast
inferredcites →https://doi.org/10.1534/genetics.116.199513openalex-snapshot
Mismatch Repair Incompatibilities in Diverse Yeast Populations
inferredcites →https://doi.org/10.1534/genetics.118.301550openalex-snapshot
Incompatibilities in Mismatch Repair Genes MLH1-PMS1 Contribute to a Wide Range of Mutation Rates in Human Isolates of Baker’s Yeast
inferredcites →https://doi.org/10.1534/genetics.118.301609openalex-snapshot
The Genetic Basis of Mutation Rate Variation in Yeast
inferredcites →https://doi.org/10.4161/cc.3.4.791openalex-snapshot
The Novel Yeast PAS Kinase Rim15 Orchestrates G0-Associated Antioxidant Defense Mechanisms
inferredcites →https://doi.org/10.4161/cc.8.3.7608openalex-snapshot
Does the cell number 10 9 still really fit one gram of tumor tissue?
inferredcites →https://doi.org/10.4161/fly.19695openalex-snapshot
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff
inferredcites →https://doi.org/10.7554/elife.14625openalex-snapshot
Spontaneous mutations and the origin and maintenance of quantitative genetic variation
inferredcites →https://doi.org/10.7554/elife.14625.023openalex-snapshot
Author response: Spontaneous mutations and the origin and maintenance of quantitative genetic variation
inferredcites →https://doi.org/10.7554/elife.22939openalex-snapshot
Adaptive tuning of mutation rates allows fast response to lethal stress in Escherichia coli
inferredcites →https://doi.org/10.7554/elife.22939.031openalex-snapshot
Author response: Adaptive tuning of mutation rates allows fast response to lethal stress in Escherichia coli

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s10682-022-10209-1openalex-snapshot
Thermal stress and mutation accumulation increase heat shock protein expression in Daphnia
inferred← citeshttps://doi.org/10.1101/2021.01.05.425442openalex-snapshot
Heat shock protein gene expression is higher and more variable with thermal stress and mutation accumulation in Daphnia
inferred← citeshttps://doi.org/10.64898/2025.12.19.695599openalex-snapshot
Protein structure shapes natural genetic variation and de novo adaptation
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