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DypFISH: Dynamic Patterned FISH to Interrogate RNA and Protein Spatial and Temporal Subcellular Distribution

https://doi.org/10.1101/536383
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Cdc42, dynein, and dynactin regulate MTOC reorientation independent of Rho-regulated microtubule stabilization
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mRNA localization: message on the move
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Genome-wide screen reveals APC-associated RNAs enriched in cell protrusions
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Coordination of Rho GTPase activities during cell protrusion
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Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue
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Spatially resolved transcriptomics and beyond
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RNA velocity of single cells
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Neuronal mRNAs travel singly into dendrites
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Functional analysis of the microtubule-interacting transcriptome
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Brühl, Paul, (born 25 Feb. 1855)
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Single β-Actin mRNA Detection in Neurons Reveals a Mechanism for Regulating Its Translatability
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Spatially resolved, highly multiplexed RNA profiling in single cells
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RNA LOCALIZATION IN DEVELOPMENT
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Distribution of myonuclei and microtubules in live muscle fibers of young, middle-aged, and old mice
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Localization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution
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A system for studying mechanisms of neuromuscular junction development and maintenance
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SMRT analysis of MTOC and nuclear positioning reveals the role of EB1 and LIC1 in single-cell polarization
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Tight coupling between nucleus and cell migration through the perinuclear actin cap
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CeFra-seq reveals broad asymmetric mRNA and noncoding RNA distribution profiles in Drosophila and human cells
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Stochastic mRNA Synthesis in Mammalian Cells
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Learning the Structure of Dynamic Probabilistic Networks

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/978-3-031-25069-9_32openalex-snapshot
PointFISH: Learning Point Cloud Representations for RNA Localization Patterns
inferred← citeshttps://doi.org/10.1137/20m1355896openalex-snapshot
The Why, How, and When of Representations for Complex Systems
inferred← citeshttps://doi.org/10.3389/fmolb.2020.00209openalex-snapshot
Pinpointing Cell Identity in Time and Space
inferred← citeshttps://doi.org/10.64898/2026.04.28.720613openalex-snapshot
SubCellSpace: Automated characterization of subcellular mRNA localization patterns in spatial transcriptomics
inferred← citeshttps://doi.org/10.70675/bb85932czd594z4c4fzb785z51e20a62ad87openalex-snapshot
Computer vision for the analysis of intra-cellular RNA localization patterns
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