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CeFra-seq reveals broad asymmetric mRNA and noncoding RNA distribution profiles in Drosophila and human cells

https://doi.org/10.1261/rna.063172.117

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Profiling subcellular localization of nuclear-encoded mitochondrial gene products in zebrafish

inferred← citeshttps://doi.org/10.26599/bdma.2024.9020002openalex-snapshot

SGCL-LncLoc: An Interpretable Deep Learning Model for Improving IncRNA Subcellular Localization Prediction with Supervised Graph Contrastive Learning

inferred← citeshttps://doi.org/10.3389/fgene.2018.00440openalex-snapshot

Sequence Determinants for Nuclear Retention and Cytoplasmic Export of mRNAs and lncRNAs

inferred← citeshttps://doi.org/10.3389/fgene.2019.01081openalex-snapshot

Characterization of Hepatocellular Carcinoma Cell Lines Using a Fractionation-Then-Sequencing Approach Reveals Nuclear-Enriched HCC-Associated lncRNAs

inferred← citeshttps://doi.org/10.3389/fgene.2021.818668openalex-snapshot

The Role of Alternative Polyadenylation in the Regulation of Subcellular RNA Localization

inferred← citeshttps://doi.org/10.3389/fgene.2026.1861282openalex-snapshot

mRNALocator-imb: an imbalance-tolerant ensemble framework integrating random forest and transformer for mRNA subcellular localization prediction

inferred← citeshttps://doi.org/10.3389/fonc.2024.1437542openalex-snapshot

Radiotherapy and breast cancer: finally, an lncRNA perspective on radiosensitivity and radioresistance

inferred← citeshttps://doi.org/10.3390/biom14070767openalex-snapshot

mRCat: A Novel CatBoost Predictor for the Binary Classification of mRNA Subcellular Localization by Fusing Large Language Model Representation and Sequence Features

inferred← citeshttps://doi.org/10.3390/cancers12092406openalex-snapshot

Back to the Future: Rethinking the Great Potential of lncRNAS for Optimizing Chemotherapeutic Response in Ovarian Cancer

inferred← citeshttps://doi.org/10.3390/genes11121475openalex-snapshot

MirLocPredictor: A ConvNet-Based Multi-Label MicroRNA Subcellular Localization Predictor by Incorporating k-Mer Positional Information

inferred← citeshttps://doi.org/10.3390/molecules28052284openalex-snapshot

DeepmRNALoc: A Novel Predictor of Eukaryotic mRNA Subcellular Localization Based on Deep Learning

inferred← citeshttps://doi.org/10.3390/ncrna12040029openalex-snapshot

Fraction-Seq: An Integrated Experimental and Computational Workflow for Determining the Localization and Abundance of Small Non-Coding RNAs in Subcellular Compartments

inferred← citeshttps://doi.org/10.59717/j.xinn-med.2024.100081openalex-snapshot

CircRNA-based therapeutics: Current opinions and clinical potential

inferred← citeshttps://doi.org/10.6084/m9.figshare.14843308openalex-snapshot

Additional file 1 of mLoc-mRNA: predicting multiple sub-cellular localization of mRNAs using random forest algorithm coupled with feature selection via elastic net

inferred← citeshttps://doi.org/10.6084/m9.figshare.14853530openalex-snapshot

Additional file 1 of LABRAT reveals association of alternative polyadenylation with transcript localization, RNA binding protein expression, transcription speed, and cancer survival

inferred← citeshttps://doi.org/10.6084/m9.figshare.14853533openalex-snapshot

Additional file 2 of LABRAT reveals association of alternative polyadenylation with transcript localization, RNA binding protein expression, transcription speed, and cancer survival

inferred← citeshttps://doi.org/10.6084/m9.figshare.14853536openalex-snapshot

Additional file 3 of LABRAT reveals association of alternative polyadenylation with transcript localization, RNA binding protein expression, transcription speed, and cancer survival

inferred← citeshttps://doi.org/10.6084/m9.figshare.14853539openalex-snapshot

Additional file 4 of LABRAT reveals association of alternative polyadenylation with transcript localization, RNA binding protein expression, transcription speed, and cancer survival

inferred← citeshttps://doi.org/10.6084/m9.figshare.24186161openalex-snapshot

Additional file 1 of Profiling the polyadenylated transcriptome of extracellular vesicles with long-read nanopore sequencing

inferred← citeshttps://doi.org/10.6084/m9.figshare.26708900openalex-snapshot

Additional file 1 of RBM22 regulates RNA polymerase II 5′ pausing, elongation rate, and termination by coordinating 7SK-P-TEFb complex and SPT5

inferred← citeshttps://doi.org/10.6084/m9.figshare.26708903openalex-snapshot

Additional file 2 of RBM22 regulates RNA polymerase II 5′ pausing, elongation rate, and termination by coordinating 7SK-P-TEFb complex and SPT5

inferred← citeshttps://doi.org/10.6084/m9.figshare.26708906openalex-snapshot

Additional file 3 of RBM22 regulates RNA polymerase II 5′ pausing, elongation rate, and termination by coordinating 7SK-P-TEFb complex and SPT5

inferred← citeshttps://doi.org/10.64898/2026.01.22.701202openalex-snapshot

Comparative profiling of SARS-CoV-2 variant infections reveals diverse impacts on host cell RNA and RNA binding protein distribution and regulation

inferred← citeshttps://doi.org/10.64898/2026.05.07.723470openalex-snapshot

pyTrance finds co-localizing RNAs in subcellular spatial transcriptomics data

inferred← citeshttps://doi.org/10.70675/682ade9cz13ccz4052za966z0dda56bbf423openalex-snapshot

Biochemical regulation of cell mechanics in C. elegans Embryo

inferred← citeshttps://doi.org/10.70675/c29dd46bz7b16z4b64z9b53z5ec00cf034eeopenalex-snapshot

Modélisation micro-fluidique de l'amyotrophie spinale et impact du transport d’ARN sur la jonction neuromusculaire

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