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Tissue structure accelerates evolution: premalignant sweeps precede neutral expansion

https://doi.org/10.1101/542019

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Quantification of Crypt and Stem Cell Evolution in the Normal and Neoplastic Human Colon

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Patient-calibrated agent-based modelling of ductal carcinoma in situ (DCIS): From microscopic measurements to macroscopic predictions of clinical progression

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Spatial invasion dynamics on random and unstructured meshes: Implications for heterogeneous tumor populations

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A spatial model predicts that dispersal and cell turnover limit intratumour heterogeneity

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A Big Bang model of human colorectal tumor growth

inferredcites →https://doi.org/10.1038/ng.3489openalex-snapshot

Identification of neutral tumor evolution across cancer types

inferredcites →https://doi.org/10.1038/ng.3891openalex-snapshot

Between-region genetic divergence reflects the mode and tempo of tumor evolution

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Spatial competition constrains resistance to targeted cancer therapy

inferredcites →https://doi.org/10.1038/s41467-018-05226-0openalex-snapshot

A temporal shift of the evolutionary principle shaping intratumor heterogeneity in colorectal cancer

inferredcites →https://doi.org/10.1038/s41559-021-01615-9openalex-snapshot

Spatial structure governs the mode of tumour evolution

inferredcites →https://doi.org/10.1038/s41586-018-0481-8openalex-snapshot

Precancerous neoplastic cells can move through the pancreatic ductal system

inferredcites →https://doi.org/10.1038/s41588-018-0128-6openalex-snapshot

Quantification of subclonal selection in cancer from bulk sequencing data

inferredcites →https://doi.org/10.1038/s41588-018-0217-6openalex-snapshot

Currently available bulk sequencing data do not necessarily support a model of neutral tumor evolution

inferredcites →https://doi.org/10.1038/s41588-018-0235-4openalex-snapshot

Reply to ‘Currently available bulk sequencing data do not necessarily support a model of neutral tumor evolution’

inferredcites →https://doi.org/10.1038/s41592-018-0108-xopenalex-snapshot

Detecting repeated cancer evolution from multi-region tumor sequencing data

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The impact of proliferation-migration tradeoffs on phenotypic evolution in cancer

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Construction of arbitrarily strong amplifiers of natural selection using evolutionary graph theory

inferredcites →https://doi.org/10.1056/nejmoa1113205openalex-snapshot

Intratumor Heterogeneity and Branched Evolution Revealed by Multiregion Sequencing

inferredcites →https://doi.org/10.1073/pnas.1010978107openalex-snapshot

Accumulation of driver and passenger mutations during tumor progression

inferredcites →https://doi.org/10.1073/pnas.1213968110openalex-snapshot

Impact of deleterious passenger mutations on cancer progression

inferredcites →https://doi.org/10.1073/pnas.1404341111openalex-snapshot

Tug-of-war between driver and passenger mutations in cancer and other adaptive processes

inferredcites →https://doi.org/10.1073/pnas.1716552115openalex-snapshot

Spatial mutation patterns as markers of early colorectal tumor cell mobility

inferredcites →https://doi.org/10.1093/molbev/msy115openalex-snapshot

Intratumor Heterogeneity and Circulating Tumor Cell Clusters

inferredcites →https://doi.org/10.1098/rsif.2017.0967openalex-snapshot

Passenger mutations can accelerate tumour suppressor gene inactivation in cancer evolution

inferredcites →https://doi.org/10.1101/113480openalex-snapshot

Intratumor Heterogeneity and Circulating Tumor Cell Clusters

inferredcites →https://doi.org/10.1101/270900openalex-snapshot

The dynamic tumor ecosystem: how cell turnover and trade-offs affect cancer evolution

inferredcites →https://doi.org/10.1101/411538openalex-snapshot

Hybrid Automata Library: A modular platform for efficient hybrid modeling with real-time visualization

inferredcites →https://doi.org/10.1126/science.1253462openalex-snapshot

Spatial and temporal diversity in genomic instability processes defines lung cancer evolution

inferredcites →https://doi.org/10.1126/science.aat7171openalex-snapshot

Minimal functional driver gene heterogeneity among untreated metastases

inferredcites →https://doi.org/10.1136/gutjnl-2018-316191openalex-snapshot

Evolutionary history of human colitis-associated colorectal cancer

inferredcites →https://doi.org/10.1158/0008-5472.can-12-2217openalex-snapshot

Intratumor Heterogeneity: Evolution through Space and Time

inferredcites →https://doi.org/10.1158/0008-5472.can-15-3283-topenalex-snapshot

The Damaging Effect of Passenger Mutations on Cancer Progression

inferredcites →https://doi.org/10.1186/s13059-018-1476-3openalex-snapshot

Timing somatic events in the evolution of cancer

inferredcites →https://doi.org/10.1371/journal.pcbi.1007243openalex-snapshot

Spatially constrained tumour growth affects the patterns of clonal selection and neutral drift in cancer genomic data

inferredcites →https://doi.org/10.1371/journal.pgen.1005778openalex-snapshot

Integrated Multiregional Analysis Proposing a New Model of Colorectal Cancer Evolution

inferredcites →https://doi.org/10.1371/journal.pone.0187242openalex-snapshot

Generation of polychromatic projection for dedicated breast computed tomography simulation using anthropomorphic numerical phantom

inferredcites →https://doi.org/10.2174/1389450111007011304openalex-snapshot

Genetic and Epigenetic Heterogeneity in Cancer: The Ultimate Challenge for Drug Therapy

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.isci.2020.101901openalex-snapshot

Selection-driven tumor evolution with public goods leads to patterns of clonal expansion consistent with neutral growth

inferred← citeshttps://doi.org/10.1038/s41598-022-04806-xopenalex-snapshot

Invasion front dynamics of interactive populations in environments with barriers

inferred← citeshttps://doi.org/10.1101/2020.02.11.944843openalex-snapshot

Selection-driven tumor evolution involving non-cell growth promotion leads to patterns of clonal expansion consistent with neutrality interpretation

inferred← citeshttps://doi.org/10.1186/s12859-019-3173-yopenalex-snapshot

EvoFreq: visualization of the Evolutionary Frequencies of sequence and model data

inferred← citeshttps://doi.org/10.1371/journal.pcbi.1008838openalex-snapshot

Elements and evolutionary determinants of genomic divergence between paired primary and metastatic tumors

inferred← citeshttps://doi.org/10.7287/peerj.8842v0.1/reviews/1openalex-snapshot

Peer Review #1 of "A unified simulation model for understanding the diversity of cancer evolution (v0.1)"

inferred← citeshttps://doi.org/10.7287/peerj.8842v0.1/reviews/2openalex-snapshot

Peer Review #2 of "A unified simulation model for understanding the diversity of cancer evolution (v0.1)"

inferred← citeshttps://doi.org/10.7287/peerj.8842v0.2/reviews/1openalex-snapshot

Peer Review #1 of "A unified simulation model for understanding the diversity of cancer evolution (v0.2)"

inferred← citeshttps://doi.org/10.7717/peerj.8842openalex-snapshot

A unified simulation model for understanding the diversity of cancer evolution

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