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In planta chromatin immunoprecipitation in Zymoseptoria tritici reveals chromatin-based regulation of putative effector gene expression
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/ece3.4724openalex-snapshot
Highly flexible infection programs in a specialized wheat pathogen
inferredcites →https://doi.org/10.1007/s00253-012-4208-8openalex-snapshot
The chromatin code of fungal secondary metabolite gene clusters
inferredcites →https://doi.org/10.1016/j.fgb.2011.11.002openalex-snapshot
Heterochromatin influences the secondary metabolite profile in the plant pathogen Fusarium graminearum
inferredcites →https://doi.org/10.1016/j.fgb.2015.03.006openalex-snapshot
Chromatin analyses of Zymoseptoria tritici : Methods for chromatin immunoprecipitation followed by high-throughput sequencing (ChIP-seq)
inferredcites →https://doi.org/10.1016/j.fgb.2015.03.015openalex-snapshot
FPLC and liquid-chromatography mass spectrometry identify candidate necrosis-inducing proteins from culture filtrates of the fungal wheat pathogen Zymoseptoria tritici
inferredcites →https://doi.org/10.1016/j.pbi.2015.05.025openalex-snapshot
Chromatin-based control of effector gene expression in plant-associated fungi
inferredcites →https://doi.org/10.1016/j.tplants.2014.04.011openalex-snapshot
The wheat–Septoria conflict: a new front opening up?
inferredcites →https://doi.org/10.1016/j.ymeth.2010.01.005openalex-snapshot
A practical approach to RT-qPCR—Publishing data that conform to the MIQE guidelines
inferredcites →https://doi.org/10.1038/nature08850openalex-snapshot
Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium
inferredcites →https://doi.org/10.1038/nbt.1621openalex-snapshot
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
inferredcites →https://doi.org/10.1038/ncomms1189openalex-snapshot
Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations
inferredcites →https://doi.org/10.1038/ng.2372openalex-snapshot
Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses
inferredcites →https://doi.org/10.1073/pnas.1303750110openalex-snapshot
Regional control of histone H3 lysine 27 methylation in Neurospora
inferredcites →https://doi.org/10.1093/bib/bbs017openalex-snapshot
Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
inferredcites →https://doi.org/10.1093/bioinformatics/btp616openalex-snapshot
edgeR : a Bioconductor package for differential expression analysis of digital gene expression data
inferredcites →https://doi.org/10.1093/bioinformatics/btr030openalex-snapshot
Identifying dispersed epigenomic domains from ChIP-Seq data
inferredcites →https://doi.org/10.1093/bioinformatics/btu638openalex-snapshot
HTSeq—a Python framework to work with high-throughput sequencing data
inferredcites →https://doi.org/10.1093/gbe/evu101openalex-snapshot
Expression Profiling of the Wheat Pathogen Zymoseptoria tritici Reveals Genomic Patterns of Transcription and Host-Specific Regulatory Programs
inferredcites →https://doi.org/10.1093/nar/gks042openalex-snapshot
Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
inferredcites →https://doi.org/10.1093/nar/gkt1223openalex-snapshot
Pfam: the protein families database
inferredcites →https://doi.org/10.1094/mpmi-09-11-0238openalex-snapshot
A Comprehensive Analysis of Genes Encoding Small Secreted Proteins Identifies Candidate Effectors in Melampsora larici-populina (Poplar Leaf Rust)
inferredcites →https://doi.org/10.1094/mpmi-12-17-0319-ropenalex-snapshot
The Rust Fungus Melampsora larici-populina Expresses a Conserved Genetic Program and Distinct Sets of Secreted Protein Genes During Infection of Its Two Host Plants, Larch and Poplar
inferredcites →https://doi.org/10.1101/gr.204974.116openalex-snapshot
Transposons passively and actively contribute to evolution of the two-speed genome of a fungal pathogen
inferredcites →https://doi.org/10.1104/pp.114.255927openalex-snapshot
Transcriptome and Metabolite Profiling of the Infection Cycle of Zymoseptoria tritici on Wheat Reveals a Biphasic Interaction with Plant Immunity Involving Differential Pathogen Chromosomal Contributions and a Variation on the Hemibiotrophic Lifestyle Definition
inferredcites →https://doi.org/10.1111/1462-2920.13427openalex-snapshot
Knock‐down of the methyltransferase Kmt6 relieves H3K27me3 and results in induction of cryptic and otherwise silent secondary metabolite gene clusters in Fusarium fujikuroi
inferredcites →https://doi.org/10.1111/mmi.12567openalex-snapshot
Histone H 3 K 9 and H 3 K 27 methylation regulates fungal alkaloid biosynthesis in a fungal endophyte–plant symbiosis
inferredcites →https://doi.org/10.1111/mmi.12977openalex-snapshot
K dm A , a histone H 3 demethylase with bipartite function, differentially regulates primary and secondary metabolism in A spergillus nidulans
inferredcites →https://doi.org/10.1111/mpp.12333openalex-snapshot
Comparative transcriptomic analyses of Z ymoseptoria tritici strains show complex lifestyle transitions and intraspecific variability in transcription profiles
inferredcites →https://doi.org/10.1111/mpp.12440openalex-snapshot
Dispensable chromosomes in Fusarium oxysporum f. sp. lycopersici
inferredcites →https://doi.org/10.1111/mpp.12464openalex-snapshot
Different waves of effector genes with contrasted genomic location are expressed by Leptosphaeria maculans during cotyledon and stem colonization of oilseed rape
inferredcites →https://doi.org/10.1111/nph.14434openalex-snapshot
A small secreted protein in Zymoseptoria tritici is responsible for avirulence on wheat cultivars carrying the Stb6 resistance gene
inferredcites →https://doi.org/10.1111/nph.15180openalex-snapshot
A fungal avirulence factor encoded in a highly plastic genomic region triggers partial resistance to septoria tritici blotch
inferredcites →https://doi.org/10.1128/mbio.01231-16openalex-snapshot
The Evolution of Orphan Regions in Genomes of a Fungal Pathogen of Wheat
inferredcites →https://doi.org/10.1128/mbio.01979-17openalex-snapshot
Detection of Cytosolic Shigella flexneri via a C-Terminal Triple-Arginine Motif of GBP1 Inhibits Actin-Based Motility
inferredcites →https://doi.org/10.1146/annurev-arplant-043014-114623openalex-snapshot
Fungal Effectors and Plant Susceptibility
inferredcites →https://doi.org/10.1186/1471-2164-15-1132openalex-snapshot
The landscape of transposable elements in the finished genome of the fungal wheat pathogen Mycosphaerella graminicola
inferredcites →https://doi.org/10.1186/1471-2164-15-891openalex-snapshot
Transposable element-assisted evolution and adaptation to host plant within the Leptosphaeria maculans-Leptosphaeria biglobosa species complex of fungal pathogens
inferredcites →https://doi.org/10.1186/1746-4811-8-48openalex-snapshot
Protocol: Chromatin immunoprecipitation (ChIP) methodology to investigate histone modifications in two model diatom species
inferredcites →https://doi.org/10.1186/s13072-015-0033-5openalex-snapshot
Histone modifications rather than the novel regional centromeres of Zymoseptoria tritici distinguish core and accessory chromosomes
inferredcites →https://doi.org/10.1371/journal.pgen.1002070openalex-snapshot
Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis
inferredcites →https://doi.org/10.1371/journal.pgen.1003916openalex-snapshot
The Fusarium graminearum Histone H3 K27 Methyltransferase KMT6 Regulates Development and Expression of Secondary Metabolite Gene Clusters
inferredcites →https://doi.org/10.1371/journal.pgen.1004227openalex-snapshot
Epigenetic Control of Effector Gene Expression in the Plant Pathogenic Fungus Leptosphaeria maculans
inferredcites →https://doi.org/10.1371/journal.pgen.1006222openalex-snapshot
KdmB, a Jumonji Histone H3 Demethylase, Regulates Genome-Wide H3K4 Trimethylation and Is Required for Normal Induction of Secondary Metabolism in Aspergillus nidulans
inferredcites →https://doi.org/10.1371/journal.pgen.1008093openalex-snapshot
Destabilization of chromosome structure by histone H3 lysine 27 methylation
inferredcites →https://doi.org/10.1371/journal.pone.0005863openalex-snapshot
Meiosis Drives Extraordinary Genome Plasticity in the Haploid Fungal Plant Pathogen Mycosphaerella graminicola
inferredcites →https://doi.org/10.1371/journal.ppat.1003037openalex-snapshot
Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi
inferredcites →https://doi.org/10.1371/journal.ppat.1005055openalex-snapshot
Rapidly Evolving Genes Are Key Players in Host Specialization and Virulence of the Fungal Wheat Pathogen Zymoseptoria tritici (Mycosphaerella graminicola)
inferredcites →https://doi.org/10.1534/g3.115.017731openalex-snapshot
RNA-seq-Based Gene Annotation and Comparative Genomics of Four Fungal Grass Pathogens in the GenusZymoseptoriaIdentify Novel Orphan Genes and Species-Specific Invasions of Transposable Elements
inferredcites →https://doi.org/10.1534/genetics.117.1119openalex-snapshot
Elucidation of the Two H3K36me3 Histone Methyltransferases Set2 and Ash1 in Fusarium fujikuroi Unravels Their Different Chromosomal Targets and a Major Impact of Ash1 on Genome Stability
inferredcites →https://doi.org/10.1534/genetics.118.301050openalex-snapshot
Extraordinary Genome Instability and Widespread Chromosome Rearrangements During Vegetative Growth
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1007/978-3-031-16503-0_11openalex-snapshot
Epigenetic Regulation of Fungal Genes Involved in Plant Colonization
inferred← citeshttps://doi.org/10.1007/978-3-031-16503-0_15openalex-snapshot
Species of Zymoseptoria (Dothideomycetes) as a Model System to Study Plant Pathogen Genome Evolution
inferred← citeshttps://doi.org/10.1007/s10577-021-09658-1openalex-snapshot
Genome-wide mapping of histone modifications during axenic growth in two species of Leptosphaeria maculans showing contrasting genomic organization
inferred← citeshttps://doi.org/10.1016/j.tig.2021.08.005openalex-snapshot
A devil's bargain with transposable elements in plant pathogens
inferred← citeshttps://doi.org/10.1093/gbe/evab135openalex-snapshot
Transposable Elements Contribute to Genome Dynamics and Gene Expression Variation in the Fungal Plant Pathogen Verticillium dahliae
inferred← citeshttps://doi.org/10.1093/molbev/msz216openalex-snapshot
Stress-Driven Transposable Element De-repression Dynamics and Virulence Evolution in a Fungal Pathogen
inferred← citeshttps://doi.org/10.1099/mgen.0.001136openalex-snapshot
The expression landscape and pangenome of long non-coding RNA in the fungal wheat pathogen Zymoseptoria tritici
inferred← citeshttps://doi.org/10.1101/2021.12.15.472773openalex-snapshot
Regulation of effector gene expression as concerted waves in Leptosphaeria maculans : a two-players game
inferred← citeshttps://doi.org/10.1101/2022.09.21.508279openalex-snapshot
The chromodomain proteins, Cbx1 and Cbx2 have distinct roles in the regulation of heterochromatin and virulence in the fungal wheat pathogen, Zymoseptoria tritici
inferred← citeshttps://doi.org/10.1101/633693openalex-snapshot
Stress-driven transposable element de-repression dynamics in a fungal pathogen
inferred← citeshttps://doi.org/10.1111/nph.18640openalex-snapshot
Potential and limits of (mal)adaptive mutation rate plasticity in plants
inferred← citeshttps://doi.org/10.1111/nph.19581openalex-snapshot
Regulation of effector gene expression as concerted waves in Leptosphaeria maculans: a two‐player game
inferred← citeshttps://doi.org/10.1111/nph.20337openalex-snapshot
FolSas2 is a regulator of early effector gene expression during Fusarium oxysporum infection
inferred← citeshttps://doi.org/10.1128/mbio.02343-20openalex-snapshot
Chromatin Dynamics Contribute to the Spatiotemporal Expression Pattern of Virulence Genes in a Fungal Plant Pathogen
inferred← citeshttps://doi.org/10.1186/s12915-021-00989-3openalex-snapshot
Large-scale transcriptomics to dissect 2 years of the life of a fungal phytopathogen interacting with its host plant
inferred← citeshttps://doi.org/10.21203/rs.3.rs-73550/v1openalex-snapshot
Genome-Wide Mapping of Histone Modifications in Two Species of Leptosphaeria Maculans Showing Contrasting Genomic Organization and Host Specialization
inferred← citeshttps://doi.org/10.3389/fgene.2022.1058741openalex-snapshot
Heterochromatin in the fungal plant pathogen, Zymoseptoria tritici: Control of transposable elements, genome plasticity and virulence
inferred← citeshttps://doi.org/10.3410/f.738795764.793580153openalex-snapshot
Faculty Opinions recommendation of Chromatin dynamics contribute to the spatiotemporal expression pattern of virulence genes in a fungal plant pathogen.
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