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Stress-driven transposable element de-repression dynamics in a fungal pathogen
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Transposable element influences on gene expression in plants
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Heterochromatin structure and function
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The impact of Septoria tritici Blotch disease on wheat: An EU perspective
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The birth and death of effectors in rapidly evolving filamentous pathogen genomes
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Response of transposable elements to environmental stressors
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Increased L1 Retrotransposition in the Neuronal Genome in Schizophrenia
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Basic Local Alignment Search Tool
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A fungal wheat pathogen evolved host specialization by extensive chromosomal rearrangements
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Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations
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Transgenerational gene silencing causes gain of virulence in a plant pathogen
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SIRT6 represses LINE1 retrotransposons by ribosylating KAP1 but this repression fails with stress and age
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Identification of a functional transposon insertion in the maize domestication gene tb1
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A unified classification system for eukaryotic transposable elements
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The evolutionary capacitor HSP90 buffers the regulatory effects of mammalian endogenous retroviruses
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Heritable epigenetic mutation of a transposon‐flanked Arabidopsis gene due to lack of the chromatin‐remodeling factor DDM1
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Cellular stress inhibits transposition of the yeast retrovirus-like element Ty3 by a ubiquitin-dependent block of virus-like particle formation.
inferredcites →https://doi.org/10.1080/07352680601054610openalex-snapshot
Fungal Pathogens: The Battle for Plant Infection
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Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/bioinformatics/btv422openalex-snapshot
TEtranscripts: a package for including transposable elements in differential expression analysis of RNA-seq datasets
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inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1093/nar/gkf436openalex-snapshot
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
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CDD: a Conserved Domain Database for the functional annotation of proteins
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Comparative Transcriptome Analyses in Zymoseptoria tritici Reveal Significant Differences in Gene Expression Among Strains During Plant Infection
inferredcites →https://doi.org/10.1094/phyto-11-13-0328-ropenalex-snapshot
Measuring Quantitative Virulence in the Wheat PathogenZymoseptoria triticiUsing High-Throughput Automated Image Analysis
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Extremely flexible infection programs in a fungal plant pathogen
inferredcites →https://doi.org/10.1101/372078openalex-snapshot
Coping with stress: morphological changes in response to environmental stimuli in a fungal plant pathogen
inferredcites →https://doi.org/10.1101/544627openalex-snapshot
In planta chromatin immunoprecipitation in Zymoseptoria tritici reveals chromatin-based regulation of putative effector gene expression
inferredcites →https://doi.org/10.1101/gad.209841.112openalex-snapshot
Piwi induces piRNA-guided transcriptional silencing and establishment of a repressive chromatin state
inferredcites →https://doi.org/10.1104/pp.114.255927openalex-snapshot
Transcriptome and Metabolite Profiling of the Infection Cycle of Zymoseptoria tritici on Wheat Reveals a Biphasic Interaction with Plant Immunity Involving Differential Pathogen Chromosomal Contributions and a Variation on the Hemibiotrophic Lifestyle Definition
inferredcites →https://doi.org/10.1105/tpc.111.086082openalex-snapshot
Transcriptional Programming and Functional Interactions within the Phytophthora sojae RXLR Effector Repertoire
inferredcites →https://doi.org/10.1105/tpc.114.126631openalex-snapshot
Transposable Element Insertion and Epigenetic Modification Cause the Multiallelic Variation in the Expression of FAE1 in Sinapis alba
inferredcites →https://doi.org/10.1111/1462-2920.13427openalex-snapshot
Knock‐down of the methyltransferase Kmt6 relieves H3K27me3 and results in induction of cryptic and otherwise silent secondary metabolite gene clusters in Fusarium fujikuroi
inferredcites →https://doi.org/10.1111/j.1365-294x.2005.02638.xopenalex-snapshot
Variation for neutral markers is correlated with variation for quantitative traits in the plant pathogenic fungus Mycosphaerella graminicola
inferredcites →https://doi.org/10.1111/j.1469-8137.2007.02026.xopenalex-snapshot
Role of hydrogen peroxide during the interaction between the hemibiotrophic fungal pathogen Septoria tritici and wheat
inferredcites →https://doi.org/10.1111/mec.12170openalex-snapshot
The impact of transposable elements in environmental adaptation
inferredcites →https://doi.org/10.1111/mmi.12567openalex-snapshot
Histone H 3 K 9 and H 3 K 27 methylation regulates fungal alkaloid biosynthesis in a fungal endophyte–plant symbiosis
inferredcites →https://doi.org/10.1111/mpp.12333openalex-snapshot
Comparative transcriptomic analyses of Z ymoseptoria tritici strains show complex lifestyle transitions and intraspecific variability in transcription profiles
inferredcites →https://doi.org/10.1111/mpp.12515openalex-snapshot
Quantitative trait locus mapping reveals complex genetic architecture of quantitative virulence in the wheat pathogen Zymoseptoria tritici
inferredcites →https://doi.org/10.1111/nph.15180openalex-snapshot
A fungal avirulence factor encoded in a highly plastic genomic region triggers partial resistance to septoria tritici blotch
inferredcites →https://doi.org/10.1124/mol.114.091728openalex-snapshot
Morphine Induces Redox-Based Changes in Global DNA Methylation and Retrotransposon Transcription by Inhibition of Excitatory Amino Acid Transporter Type 3–Mediated Cysteine Uptake
inferredcites →https://doi.org/10.1126/science.1185775openalex-snapshot
Maize Tumors Caused by Ustilago maydis Require Organ-Specific Genes in Host and Pathogen
inferredcites →https://doi.org/10.1128/mbio.01231-16openalex-snapshot
The Evolution of Orphan Regions in Genomes of a Fungal Pathogen of Wheat
inferredcites →https://doi.org/10.1128/mmbr.59.3.506-531.1995openalex-snapshot
Stress-induced transcriptional activation
inferredcites →https://doi.org/10.1128/msphere.00393-17openalex-snapshot
Plasticity of the MFS1 Promoter Leads to Multidrug Resistance in the Wheat Pathogen Zymoseptoria tritici
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The Genome Biology of Effector Gene Evolution in Filamentous Plant Pathogens
inferredcites →https://doi.org/10.1146/annurev.genet.36.040202.092802openalex-snapshot
Chromosome Rearrangements and Transposable Elements
inferredcites →https://doi.org/10.1159/000084979openalex-snapshot
Repbase Update, a database of eukaryotic repetitive elements
inferredcites →https://doi.org/10.1186/1471-2105-7-191openalex-snapshot
STEM: a tool for the analysis of short time series gene expression data
inferredcites →https://doi.org/10.1186/1471-2105-9-478openalex-snapshot
RIPCAL: a tool for alignment-based analysis of repeat-induced point mutations in fungal genomic sequences
inferredcites →https://doi.org/10.1186/1471-2164-14-722openalex-snapshot
Genome-scale cold stress response regulatory networks in ten Arabidopsis thalianaecotypes
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Constitutive heterochromatin formation and transcription in mammals
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A scaling normalization method for differential expression analysis of RNA-seq data
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DNA demethylases target promoter transposable elements to positively regulate stress responsive genes in Arabidopsis
inferredcites →https://doi.org/10.1186/s12859-018-2376-yopenalex-snapshot
MITE Tracker: an accurate approach to identify miniature inverted-repeat transposable elements in large genomes
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Pangenome analyses of the wheat pathogen Zymoseptoria tritici reveal the structural basis of a highly plastic eukaryotic genome
inferredcites →https://doi.org/10.1186/s12915-018-0543-2openalex-snapshot
Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat
inferredcites →https://doi.org/10.1186/s13059-016-1059-0openalex-snapshot
Widespread natural variation of DNA methylation within angiosperms
inferredcites →https://doi.org/10.1186/s13072-015-0033-5openalex-snapshot
Histone modifications rather than the novel regional centromeres of Zymoseptoria tritici distinguish core and accessory chromosomes
inferredcites →https://doi.org/10.1371/journal.pgen.1002070openalex-snapshot
Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis
inferredcites →https://doi.org/10.1371/journal.pgen.1003234openalex-snapshot
Transposable Elements Re-Wire and Fine-Tune the Transcriptome
inferredcites →https://doi.org/10.1371/journal.pgen.1003567openalex-snapshot
Breakage-fusion-bridge Cycles and Large Insertions Contribute to the Rapid Evolution of Accessory Chromosomes in a Fungal Pathogen
inferredcites →https://doi.org/10.1371/journal.pgen.1003916openalex-snapshot
The Fusarium graminearum Histone H3 K27 Methyltransferase KMT6 Regulates Development and Expression of Secondary Metabolite Gene Clusters
inferredcites →https://doi.org/10.1371/journal.pgen.1004115openalex-snapshot
How a Retrotransposon Exploits the Plant's Heat Stress Response for Its Activation
inferredcites →https://doi.org/10.1371/journal.pgen.1004227openalex-snapshot
Epigenetic Control of Effector Gene Expression in the Plant Pathogenic Fungus Leptosphaeria maculans
inferredcites →https://doi.org/10.1371/journal.pgen.1005142openalex-snapshot
Methylation-Sensitive Expression of a DNA Demethylase Gene Serves As an Epigenetic Rheostat
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The Role of piRNA-Mediated Epigenetic Silencing in the Population Dynamics of Transposable Elements in Drosophila melanogaster
inferredcites →https://doi.org/10.1371/journal.pone.0016526openalex-snapshot
Considering Transposable Element Diversification in De Novo Annotation Approaches
inferredcites →https://doi.org/10.1371/journal.pone.0029425openalex-snapshot
LTR Retrotransposons in Fungi
inferredcites →https://doi.org/10.1371/journal.pone.0147903openalex-snapshot
Expression of the Retrotransposon Helena Reveals a Complex Pattern of TE Deregulation in Drosophila Hybrids
inferredcites →https://doi.org/10.1371/journal.ppat.1002608openalex-snapshot
The Accessory Genome as a Cradle for Adaptive Evolution in Pathogens
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Sequential Delivery of Host-Induced Virulence Effectors by Appressoria and Intracellular Hyphae of the Phytopathogen Colletotrichum higginsianum
inferredcites →https://doi.org/10.1534/g3.114.015289openalex-snapshot
Quantitative Trait Locus Mapping of Melanization in the Plant Pathogenic FungusZymoseptoria tritici
inferredcites →https://doi.org/10.1534/g3.115.017731openalex-snapshot
RNA-seq-Based Gene Annotation and Comparative Genomics of Four Fungal Grass Pathogens in the GenusZymoseptoriaIdentify Novel Orphan Genes and Species-Specific Invasions of Transposable Elements
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The First Steps of Transposable Elements Invasion
inferredcites →https://doi.org/10.1534/genetics.115.180968openalex-snapshot
The Impact of Recombination Hotspots on Genome Evolution of a Fungal Plant Pathogen
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R: A Language and Environment for Statistical Computing
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Moving through the Stressed Genome: Emerging Regulatory Roles for Transposons in Plant Stress Response
inferredcites →https://doi.org/10.3389/fpls.2017.00045openalex-snapshot
EARE-1, a Transcriptionally Active Ty1/Copia-Like Retrotransposon Has Colonized the Genome of Excoecaria agallocha through Horizontal Transfer
inferredcites →https://doi.org/10.3390/jof3040051openalex-snapshot
Fungal Strategies to Evade the Host Immune Recognition
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1016/j.gde.2019.07.006openalex-snapshot
Metabolic gene clusters, fungal diversity, and the generation of accessory functions
inferred← citeshttps://doi.org/10.1101/2020.02.11.944652openalex-snapshot
A population-level invasion by transposable elements triggers genome expansion in a fungal pathogen
inferred← citeshttps://doi.org/10.1128/mbio.02840-23openalex-snapshot
Population-level transposable element expression dynamics influence trait evolution in a fungal crop pathogen
inferred← citeshttps://doi.org/10.1186/s12915-020-0744-3openalex-snapshot
A 19-isolate reference-quality global pangenome for the fungal wheat pathogen Zymoseptoria tritici
inferred← citeshttps://doi.org/10.1186/s12915-023-01763-3openalex-snapshot
Genome-wide expression QTL mapping reveals the highly dynamic regulatory landscape of a major wheat pathogen
inferred← citeshttps://doi.org/10.1371/journal.pbio.3003433openalex-snapshot
Phylogenomic signatures of repeat-induced point mutations across the fungal kingdom
inferred← citeshttps://doi.org/10.1371/journal.pgen.1009386openalex-snapshot
Genomic rearrangements generate hypervariable mini-chromosomes in host-specific isolates of the blast fungus
inferred← citeshttps://doi.org/10.1371/journal.ppat.1007780openalex-snapshot
A dispensable paralog of succinate dehydrogenase subunit C mediates standing resistance towards a subclass of SDHI fungicides in Zymoseptoria tritici
inferred← citeshttps://doi.org/10.32417/1997-4868-2020-201-10-64-72openalex-snapshot
Isolation and PBS differentiation of isolates Alternaria spp.
inferred← citeshttps://doi.org/10.70675/fa3366b4z3dd8z4e94za9f9za68c43575692openalex-snapshot
Effet de la sélection fluctuante sur le pathogène du blé Zymoseptoria tritici par une approche d'évolution expérimentale
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