On the public citation graph
Multiple evolutionary trajectories for non-O157 Shiga toxigenic Escherichia coli
0 signed · 121 inferred · view as graph
Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.
Is this your work? Sign in with ORCID and put your name on the
claims that are yours.
Reference health. See whether every reference in this work resolves to a
known work and none has been retracted — and get a dated CiteStamped
badge you can embed.
What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/9780470720639.ch10openalex-snapshot
Adhesion of EnterotoxigenicEscherichia coliin Humans and Animals
inferredcites →https://doi.org/10.1007/s00203-011-0725-6openalex-snapshot
Genome sequence analyses of two isolates from the recent Escherichia coli outbreak in Germany reveal the emergence of a new pathotype: Entero-Aggregative-Haemorrhagic Escherichia coli (EAHEC)
inferredcites →https://doi.org/10.1007/s00284-005-0447-6openalex-snapshot
Escherichia coli O157 Somatic Antigen Is Present in an Isolate of E. fergusonii
inferredcites →https://doi.org/10.1016/b978-0-12-800262-9.00003-2openalex-snapshot
Shiga Toxin-Producing Escherichia coli
inferredcites →https://doi.org/10.1016/j.ijfoodmicro.2010.01.021openalex-snapshot
Food-borne diseases — The challenges of 20 years ago still persist while new ones continue to emerge
inferredcites →https://doi.org/10.1016/j.jmb.2009.09.052openalex-snapshot
Genome Sequences of Escherichia coli B strains REL606 and BL21(DE3)
inferredcites →https://doi.org/10.1016/j.vetmic.2008.03.001openalex-snapshot
Activatable Shiga toxin 2d (Stx2d) in STEC strains isolated from cattle and sheep at slaughter
inferredcites →https://doi.org/10.1016/j.vetmic.2011.11.017openalex-snapshot
Applicability of a multiplex PCR to detect O26, O45, O103, O111, O121, O145, and O157 serogroups of Escherichia coli in cattle feces1
inferredcites →https://doi.org/10.1016/s0140-6736(83)91795-6openalex-snapshot
SPORADIC CASES OF HAEMOLYTIC-URAEMIC SYNDROME ASSOCIATED WITH FAECAL CYTOTOXIN AND CYTOTOXIN-PRODUCING ESCHERICHIA COLI IN STOOLS
inferredcites →https://doi.org/10.1038/35017546openalex-snapshot
Parallel evolution of virulence in pathogenic Escherichia coli
inferredcites →https://doi.org/10.1038/35054089openalex-snapshot
Genome sequence of enterohaemorrhagic Escherichia coli O157:H7
inferredcites →https://doi.org/10.1038/nrmicro2265openalex-snapshot
Molecular mechanisms of Escherichia coli pathogenicity
inferredcites →https://doi.org/10.1038/nrmicro3241openalex-snapshot
CRISPR–Cas systems: beyond adaptive immunity
inferredcites →https://doi.org/10.1046/j.1365-2958.2002.02839.xopenalex-snapshot
Identification of genes that are associated with DNA repeats in prokaryotes
inferredcites →https://doi.org/10.1056/nejm198303243081203openalex-snapshot
Hemorrhagic Colitis Associated with a Rare Escherichia coli Serotype
inferredcites →https://doi.org/10.1056/nejm199508103330608openalex-snapshot
Escherichia coliO157:H7 and the Hemolytic–Uremic Syndrome
inferredcites →https://doi.org/10.1056/nejmoa1107643openalex-snapshot
Open-Source Genomic Analysis of Shiga-Toxin–ProducingE. coliO104:H4
inferredcites →https://doi.org/10.1073/pnas.0400326101openalex-snapshot
Dissecting virulence: Systematic and functional analyses of a pathogenicity island
inferredcites →https://doi.org/10.1073/pnas.0600938103openalex-snapshot
Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli : A comparative genomics approach
inferredcites →https://doi.org/10.1073/pnas.0604891103openalex-snapshot
An extensive repertoire of type III secretion effectors in Escherichia coli O157 and the role of lambdoid phages in their dissemination
inferredcites →https://doi.org/10.1073/pnas.0903585106openalex-snapshot
Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli
inferredcites →https://doi.org/10.1073/pnas.1107176108openalex-snapshot
Genomic anatomy of Escherichia coli O157:H7 outbreaks
inferredcites →https://doi.org/10.1073/pnas.252529799openalex-snapshot
Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli
inferredcites →https://doi.org/10.1073/pnas.87.20.7839openalex-snapshot
A genetic locus of enteropathogenic Escherichia coli necessary for the production of attaching and effacing lesions on tissue culture cells.
inferredcites →https://doi.org/10.1073/pnas.92.5.1664openalex-snapshot
A genetic locus of enterocyte effacement conserved among diverse enterobacterial pathogens.
inferredcites →https://doi.org/10.1078/1438-4221-00229openalex-snapshot
Dissemination of pheU- and pheV-located genomic islands among enteropathogenic (EPEC) and enterohemorrhagic (EHEC) E. coli and their possible role in the horizontal transfer of the locus of enterocyte effacement (LEE)
inferredcites →https://doi.org/10.1080/10408410601172172openalex-snapshot
The Non-O157 Shiga-Toxigenic (Verocytotoxigenic)Escherichia coli; Under-Rated Pathogens
inferredcites →https://doi.org/10.1084/jem.20040392openalex-snapshot
A New Family of Potent AB5 Cytotoxins Produced by Shiga Toxigenic Escherichia coli
inferredcites →https://doi.org/10.1086/432722openalex-snapshot
Enterohemorrhagic Escherichia coli in Human Infection: In Vivo Evolution of a Bacterial Pathogen
inferredcites →https://doi.org/10.1086/466536openalex-snapshot
Non‐O157 Shiga Toxin–ProducingEscherichia coliInfections in the United States, 1983–2002
inferredcites →https://doi.org/10.1086/509573openalex-snapshot
The Emerging Clinical Importance of Non-O157 Shiga Toxin--Producing Escherichia coli
inferredcites →https://doi.org/10.1086/517438openalex-snapshot
Genotypic and Phenotypic Changes in the Emergence ofEscherichia coliO157:H7
inferredcites →https://doi.org/10.1089/cmb.2012.0021openalex-snapshot
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
inferredcites →https://doi.org/10.1089/fpd.2009.0482openalex-snapshot
Microarray Analysis and Draft Genomes of Two Escherichia coli O157:H7 Lineage II Cattle Isolates FRIK966 and FRIK2000 Investigating Lack of Shiga Toxin Expression
inferredcites →https://doi.org/10.1089/fpd.2012.1401openalex-snapshot
Increased Recognition of Non-O157 Shiga Toxin–Producing Escherichia coli Infections in the United States During 2000–2010: Epidemiologic Features and Comparison with E. coli O157 Infections
inferredcites →https://doi.org/10.1089/fpd.2013.1696openalex-snapshot
Pathogenicity Islands in Shiga Toxin–Producing Escherichia coli O26, O103, and O111 Isolates from Humans and Animals
inferredcites →https://doi.org/10.1089/fpd.2013.1704openalex-snapshot
Global Incidence of Human Shiga Toxin–Producing Escherichia coli Infections and Deaths: A Systematic Review and Knowledge Synthesis
inferredcites →https://doi.org/10.1093/bioinformatics/14.1.68openalex-snapshot
SplitsTree: analyzing and visualizing evolutionary data.
inferredcites →https://doi.org/10.1093/bioinformatics/bti553openalex-snapshot
ACT: the Artemis comparison tool
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btp356openalex-snapshot
Reordering contigs of draft genomes using the Mauve Aligner
inferredcites →https://doi.org/10.1093/bioinformatics/btq665openalex-snapshot
Mugsy: fast multiple alignment of closely related whole genomes
inferredcites →https://doi.org/10.1093/bioinformatics/btr039openalex-snapshot
Easyfig: a genome comparison visualizer
inferredcites →https://doi.org/10.1093/bioinformatics/btu153openalex-snapshot
Prokka: rapid prokaryotic genome annotation
inferredcites →https://doi.org/10.1093/infdis/162.2.553openalex-snapshot
Escherichia coli 0157:H7 and the Hemolytic Uremic Syndrome: Importance of Early Cultures in Establishing the Etiology
inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot
MUSCLE: multiple sequence alignment with high accuracy and high throughput
inferredcites →https://doi.org/10.1093/nar/gki954openalex-snapshot
Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysentery
inferredcites →https://doi.org/10.1093/nar/gkm360openalex-snapshot
CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats
inferredcites →https://doi.org/10.1093/sysbio/syq010openalex-snapshot
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
inferredcites →https://doi.org/10.1099/jmm.0.007732-0openalex-snapshot
Isolation and detection of Shiga toxin-producing Escherichia coli in clinical stool samples using conventional and molecular methods
inferredcites →https://doi.org/10.1099/jmm.0.47053-0openalex-snapshot
Sequence-based typing of genetic targets encoded outside of the O-antigen gene cluster is indicative of Shiga toxin-producing Escherichia coli serogroup lineages
inferredcites →https://doi.org/10.1099/mic.0.036046-0openalex-snapshot
Diversity of CRISPR loci in Escherichia coli
inferredcites →https://doi.org/10.1109/csb.2004.74openalex-snapshot
EcMLST: an online database for multi locus sequence typing of pathogenic Escherichia coli
inferredcites →https://doi.org/10.1111/j.1365-2958.2006.05255.xopenalex-snapshot
Role of pathogenicity island‐associated integrases in the genome plasticity of uropathogenic Escherichia coli strain 536
inferredcites →https://doi.org/10.1111/j.1462-2920.2010.02274.xopenalex-snapshot
O‐antigen diversity and lateral transfer of the wbe region among Vibrio splendidus isolates
inferredcites →https://doi.org/10.1111/j.1574-6968.2007.00856.xopenalex-snapshot
Distribution of virulence profiles related to new toxins and putative adhesins in Shiga toxin-producingEscherichia coliisolated from diverse sources in Brazil
inferredcites →https://doi.org/10.1126/science.1138140openalex-snapshot
CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes
inferredcites →https://doi.org/10.1126/science.277.5331.1453openalex-snapshot
The Complete Genome Sequence of Escherichia coli K-12
inferredcites →https://doi.org/10.1128/9781555818463.ch12openalex-snapshot
EnterohemorrhagicEscherichia coli
inferredcites →https://doi.org/10.1128/aem.02833-10openalex-snapshot
Prevalence and Characterization of Non-O157 Shiga Toxin-ProducingEscherichia coliIsolates from Commercial Ground Beef in the United States
inferredcites →https://doi.org/10.1128/aem.02937-06openalex-snapshot
Shiga Toxin Gene Loss and Transfer In Vitro and In Vivo during Enterohemorrhagic Escherichia coli O26 Infection in Humans
inferredcites →https://doi.org/10.1128/aem.07520-11openalex-snapshot
Seropathotypes, Phylogroups, Stx Subtypes, and Intimin Types of Wildlife-Carried, Shiga Toxin-Producing Escherichia coli Strains with the Same Characteristics as Human-Pathogenic Isolates
inferredcites →https://doi.org/10.1128/aem.70.1.61-68.2004openalex-snapshot
Localization of the Insertion Site and Pathotype Determination of the Locus of Enterocyte Effacement of Shiga Toxin-Producing Escherichia coli Strains
inferredcites →https://doi.org/10.1128/iai.00031-09openalex-snapshot
Sab, a Novel Autotransporter of Locus of Enterocyte Effacement-Negative Shiga-Toxigenic Escherichia coli O113:H21, Contributes to Adherence and Biofilm Formation
inferredcites →https://doi.org/10.1128/iai.00932-10openalex-snapshot
A Comparative Genomic Analysis of Diverse Clonal Types of EnterotoxigenicEscherichia coliReveals Pathovar-Specific Conservation
inferredcites →https://doi.org/10.1128/iai.01199-10openalex-snapshot
Genotype and Phenotypes of an Intestine-Adapted Escherichia coli K-12 Mutant Selected by Animal Passage for Superior Colonization
inferredcites →https://doi.org/10.1128/iai.18.3.775-779.1977openalex-snapshot
Vero response to a cytotoxin of Escherichia coli
inferredcites →https://doi.org/10.1128/iai.68.3.1400-1407.2000openalex-snapshot
Iha: a Novel Escherichia coli O157:H7 Adherence-Conferring Molecule Encoded on a Recently Acquired Chromosomal Island of Conserved Structure
inferredcites →https://doi.org/10.1128/iai.69.11.6999-7009.2001openalex-snapshot
Characterization of Saa, a Novel Autoagglutinating Adhesin Produced by Locus of Enterocyte Effacement-Negative Shiga-Toxigenic Escherichia coli Strains That Are Virulent for Humans
inferredcites →https://doi.org/10.1128/iai.70.12.6853-6859.2002openalex-snapshot
Molecular Characterization of a Serotype O121:H19 Clone, a Distinct Shiga Toxin-Producing Clone of PathogenicEscherichia coli
inferredcites →https://doi.org/10.1128/iai.71.11.6307-6319.2003openalex-snapshot
Transfer Region of pO113 from Enterohemorrhagic Escherichia coli : Similarity with R64 and Identification of a Novel Plasmid-Encoded Autotransporter, EpeA
inferredcites →https://doi.org/10.1128/iai.73.5.2573-2585.2005openalex-snapshot
Enteropathogenic and EnterohemorrhagicEscherichia coliInfections: Translocation, Translocation, Translocation
inferredcites →https://doi.org/10.1128/jb.00118-11openalex-snapshot
Draft Genome Sequences of Six Escherichia coli Isolates from the Stepwise Model of Emergence of Escherichia coli O157:H7
inferredcites →https://doi.org/10.1128/jb.01238-08openalex-snapshot
Complete Genome Sequence and Comparative Genome Analysis of Enteropathogenic Escherichia coli O127:H6 Strain E2348/69
inferredcites →https://doi.org/10.1128/jb.01307-10openalex-snapshot
CRISPR Distribution within the Escherichia coli Species Is Not Suggestive of Immunity-Associated Diversifying Selection
inferredcites →https://doi.org/10.1128/jb.01317-07openalex-snapshot
Molecular Characterization Reveals Similar Virulence Gene Content in Unrelated Clonal Groups of Escherichia coli of Serogroup O174 (OX3)
inferredcites →https://doi.org/10.1128/jb.01524-10openalex-snapshot
Lateral Transfer of Genes and Gene Fragments in Staphylococcus Extends beyond Mobile Elements
inferredcites →https://doi.org/10.1128/jb.01695-07openalex-snapshot
The Complete Genome Sequence of Escherichia coli DH10B: Insights into the Biology of a Laboratory Workhorse
inferredcites →https://doi.org/10.1128/jb.05193-11openalex-snapshot
Genome Sequence of Escherichia coli AA86, Isolated from Cow Feces
inferredcites →https://doi.org/10.1128/jb.05374-11openalex-snapshot
Complete Genome Sequence of the Crohn's Disease-Associated Adherent-Invasive Escherichia coliStrain HM605
inferredcites →https://doi.org/10.1128/jb.06011-11openalex-snapshot
Genome Sequence of Escherichia coli XH140A, Which Produces l -Threonine
inferredcites →https://doi.org/10.1128/jb.06099-11openalex-snapshot
Draft Genome Sequence of Escherichia coli XH001, a Producer of l -Threonine in Industry
inferredcites →https://doi.org/10.1128/jb.06225-11openalex-snapshot
Genome Sequences and Phylogenetic Analysis of K88- and F18-Positive Porcine Enterotoxigenic Escherichia coli
inferredcites →https://doi.org/10.1128/jb.182.18.5256-5261.2000openalex-snapshot
The Escherichia coli O111 and Salmonella enterica O35 Gene Clusters: Gene Clusters Encoding the Same Colitose-Containing O Antigen Are Highly Conserved
inferredcites →https://doi.org/10.1128/jb.184.2.479-487.2002openalex-snapshot
Molecular Evolution of the Intimin Gene in O111 Clones of PathogenicEscherichia coli
inferredcites →https://doi.org/10.1128/jb.186.11.3547-3560.2004openalex-snapshot
The ETT2 Gene Cluster, Encoding a Second Type III Secretion System from Escherichia coli , Is Present in the Majority of Strains but Has Undergone Widespread Mutational Attrition
inferredcites →https://doi.org/10.1128/jb.187.5.1783-1791.2005openalex-snapshot
Evolution of Genomic Content in the Stepwise Emergence ofEscherichia coliO157:H7
inferredcites →https://doi.org/10.1128/jcm.00789-12openalex-snapshot
Molecular Characterization Reveals Three Distinct Clonal Groups among Clinical Shiga Toxin-Producing Escherichia coli Strains of Serogroup O103
inferredcites →https://doi.org/10.1128/jcm.00860-12openalex-snapshot
Multicenter Evaluation of a Sequence-Based Protocol for Subtyping Shiga Toxins and Standardizing Stx Nomenclature
inferredcites →https://doi.org/10.1128/jcm.01474-06openalex-snapshot
Phylogenetic Comparisons Reveal Multiple Acquisitions of the Toxin Genes by Enterotoxigenic Escherichia coli Strains of Different Evolutionary Lineages
inferredcites →https://doi.org/10.1128/jcm.02097-12openalex-snapshot
Use of Clustered Regularly Interspaced Short Palindromic Repeat Sequence Polymorphisms for Specific Detection of Enterohemorrhagic Escherichia coli Strains of Serotypes O26:H11, O45:H2, O103:H2, O111:H8, O121:H19, O145:H28, and O157:H7 by Real-Time PCR
inferredcites →https://doi.org/10.1128/jcm.41.11.4930-4940.2003openalex-snapshot
Association of Genomic O Island 122 of Escherichia coli EDL 933 with Verocytotoxin-Producing Escherichia coli Seropathotypes That Are Linked to Epidemic and/or Serious Disease
inferredcites →https://doi.org/10.1128/jcm.41.3.926-936.2003openalex-snapshot
stx 1c Is the Most Common Shiga Toxin 1 Subtype among Shiga Toxin-Producing Escherichia coli Isolates from Sheep but Not among Isolates from Cattle
inferredcites →https://doi.org/10.1128/jcm.41.8.3777-3783.2003openalex-snapshot
Presence of Activatable Shiga Toxin Genotype ( stx 2d ) in Shiga Toxigenic Escherichia coli from Livestock Sources
inferredcites →https://doi.org/10.1128/jcm.42.11.4937-4946.2004openalex-snapshot
Distribution of Putative Adhesins in Different Seropathotypes of Shiga Toxin-Producing Escherichia coli
inferredcites →https://doi.org/10.1128/jcm.43.12.6098-6107.2005openalex-snapshot
Association of Virulence Genotype with Phylogenetic Background in Comparison to Different Seropathotypes of Shiga Toxin-Producing Escherichia coli Isolates
inferredcites →https://doi.org/10.1128/jcm.43.6.2944-2947.2005openalex-snapshot
Multiplex PCR for Direct Detection of Shiga Toxigenic Escherichia coli Strains Producing the Novel Subtilase Cytotoxin
inferredcites →https://doi.org/10.1172/jci12404openalex-snapshot
Pathogenesis and evolution of virulence in enteropathogenic and enterohemorrhagic Escherichia coli
inferredcites →https://doi.org/10.1186/1471-2105-10-421openalex-snapshot
BLAST+: architecture and applications
inferredcites →https://doi.org/10.1186/1471-2105-13-48openalex-snapshot
Mapsembler, targeted and micro assembly of large NGS datasets on a desktop computer
inferredcites →https://doi.org/10.1186/1471-2105-8-18openalex-snapshot
PILER-CR: Fast and accurate identification of CRISPR repeats
inferredcites →https://doi.org/10.1186/1471-2164-10-296openalex-snapshot
Genomic diversity of pathogenic Escherichia coli of the EHEC 2 clonal complex
inferredcites →https://doi.org/10.1186/1471-2164-12-9openalex-snapshot
The genome sequence of E. coli W (ATCC 9637): comparative genome analysis and an improved genome-scale reconstruction of E. coli
inferredcites →https://doi.org/10.1186/gb-2004-5-2-r12openalex-snapshot
Versatile and open software for comparing large genomes
inferredcites →https://doi.org/10.1371/journal.pcbi.1004041openalex-snapshot
ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
inferredcites →https://doi.org/10.1371/journal.pone.0008700openalex-snapshot
Derivation of Escherichia coli O157:H7 from Its O55:H7 Precursor
inferredcites →https://doi.org/10.1371/journal.pone.0011126openalex-snapshot
The Small, Slow and Specialized CRISPR and Anti-CRISPR of Escherichia and Salmonella
inferredcites →https://doi.org/10.1371/journal.pone.0031413openalex-snapshot
The Highly Virulent 2006 Norwegian EHEC O103:H25 Outbreak Strain Is Related to the 2011 German O104:H4 Outbreak Strain
inferredcites →https://doi.org/10.1371/journal.pone.0036144openalex-snapshot
A Novel Escherichia coli O157:H7 Clone Causing a Major Hemolytic Uremic Syndrome Outbreak in China
inferredcites →https://doi.org/10.1534/genetics.105.048975openalex-snapshot
A Simple and Robust Statistical Test for Detecting the Presence of Recombination
inferredcites →https://doi.org/10.3201/eid1408.071082openalex-snapshot
Analysis of Collection of Hemolytic Uremic Syndrome–associated EnterohemorrhagicEscherichia coli
inferredcites →https://doi.org/10.3201/eid1502.080631openalex-snapshot
Shiga Toxin–producing Escherichia coli Strains Negative for Locus of Enterocyte Effacement
inferredcites →https://doi.org/10.3201/eid1509.090161openalex-snapshot
Phylogeny and Disease Association of Shiga Toxin–producing Escherichia coli O91
inferredcites →https://doi.org/10.3389/fcimb.2012.00133openalex-snapshot
Comparative Genomics and stx Phage Characterization of LEE-Negative Shiga Toxin-Producing Escherichia coli
inferredcites →https://doi.org/10.3389/fmicb.2011.00120openalex-snapshot
Characterization of EhaJ, a New Autotransporter Protein from Enterohemorrhagic and Enteropathogenic Escherichia coli
inferredcites →https://doi.org/10.4315/0362-028x.jfp-11-058openalex-snapshot
Economic Burden from Health Losses Due to Foodborne Illness in the United States
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1038/s41598-021-83775-zopenalex-snapshot
Population structure and genetic diversity of non-O157 Shiga toxin-producing Escherichia coli (STEC) clinical isolates from Michigan
inferred← citeshttps://doi.org/10.1128/aac.01189-21openalex-snapshot
Antibiotic Susceptibility Profiles and Frequency of Resistance Genes in Clinical Shiga Toxin-Producing Escherichia coli Isolates from Michigan over a 14-Year Period
inferred← citeshttps://doi.org/10.1371/journal.pone.0313978openalex-snapshot
Growth dynamics and protein-expression of Escherichia coli serotypes O26:H11, O111:H8 and O145:NM in the bovine rumen
inferred← citeshttps://doi.org/10.3390/microorganisms11051298openalex-snapshot
Whole-Genome Sequencing of Shiga Toxin-Producing Escherichia coli for Characterization and Outbreak Investigation
Editorial review for independent work. ICSAC — the Institute for Complexity
Science and Advanced Computing — runs a structured editorial panel for researchers
publishing outside journals, and publishes on CiteStamp rails. Submission is free
and goes through ORCID: icsacinstitute.org/submit.