On the public citation graph

Genetic variation influences pluripotent ground state stability in mouse embryonic stem cells through a hierarchy of molecular phenotypes

https://doi.org/10.1101/552059

0 signed · 73 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.

Claim with ORCID

Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.

See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/s00335-012-9414-2openalex-snapshot

The diversity outbred mouse population

inferredcites →https://doi.org/10.1016/j.cell.2009.07.039openalex-snapshot

Nanog Is the Gateway to the Pluripotent Ground State

inferredcites →https://doi.org/10.1016/j.cell.2010.10.019openalex-snapshot

Stepwise Histone Replacement by SWR1 Requires Dual Activation with Histone H2A.Z and Canonical Nucleosome

inferredcites →https://doi.org/10.1016/j.cell.2012.03.026openalex-snapshot

The Transcriptional and Epigenomic Foundations of Ground State Pluripotency

inferredcites →https://doi.org/10.1016/j.cell.2013.08.022openalex-snapshot

One-Step Generation of Mice Carrying Reporter and Conditional Alleles by CRISPR/Cas-Mediated Genome Engineering

inferredcites →https://doi.org/10.1016/j.stem.2009.04.015openalex-snapshot

Metastable Pluripotent States in NOD-Mouse-Derived ESCs

inferredcites →https://doi.org/10.1016/j.stem.2010.05.003openalex-snapshot

A Murine ESC-like State Facilitates Transgenesis and Homologous Recombination in Human Pluripotent Stem Cells

inferredcites →https://doi.org/10.1016/j.stem.2016.11.005openalex-snapshot

Analysis of Transcriptional Variability in a Large Human iPSC Library Reveals Genetic and Non-genetic Determinants of Heterogeneity

inferredcites →https://doi.org/10.1016/j.stem.2017.03.009openalex-snapshot

Large-Scale Profiling Reveals the Influence of Genetic Variation on Gene Expression in Human Induced Pluripotent Stem Cells

inferredcites →https://doi.org/10.1016/j.stem.2017.12.011openalex-snapshot

Capturing Totipotent Stem Cells

inferredcites →https://doi.org/10.1016/j.stemcr.2015.12.009openalex-snapshot

Genetic Variability Overrides the Impact of Parental Cell Type and Determines iPSC Differentiation Potential

inferredcites →https://doi.org/10.1016/j.stemcr.2017.08.024openalex-snapshot

RNA Exosome Complex-Mediated Control of Redox Status in Pluripotent Stem Cells

inferredcites →https://doi.org/10.1038/292154a0openalex-snapshot

Establishment in culture of pluripotential cells from mouse embryos

inferredcites →https://doi.org/10.1038/mt.2010.179openalex-snapshot

Nodal/Activin Signaling Predicts Human Pluripotent Stem Cell Lines Prone to Differentiate Toward the Hematopoietic Lineage

inferredcites →https://doi.org/10.1038/nature01434openalex-snapshot

Genetics of gene expression surveyed in maize, mouse and man

inferredcites →https://doi.org/10.1038/nature05950openalex-snapshot

Derivation of pluripotent epiblast stem cells from mammalian embryos

inferredcites →https://doi.org/10.1038/nature05972openalex-snapshot

New cell lines from mouse epiblast share defining features with human embryonic stem cells

inferredcites →https://doi.org/10.1038/nature06968openalex-snapshot

The ground state of embryonic stem cell self-renewal

inferredcites →https://doi.org/10.1038/nature10413openalex-snapshot

Mouse genomic variation and its effect on phenotypes and gene regulation

inferredcites →https://doi.org/10.1038/nature11244openalex-snapshot

Embryonic stem cell potency fluctuates with endogenous retrovirus activity

inferredcites →https://doi.org/10.1038/nature18270openalex-snapshot

Defining the consequences of genetic variation on a proteome-wide scale

inferredcites →https://doi.org/10.1038/nbt.3388openalex-snapshot

A comparison of genetically matched cell lines reveals the equivalence of human iPSCs and ESCs

inferredcites →https://doi.org/10.1038/nbt.3519openalex-snapshot

Near-optimal probabilistic RNA-seq quantification

inferredcites →https://doi.org/10.1038/nbt1383openalex-snapshot

Marked differences in differentiation propensity among human embryonic stem cell lines

inferredcites →https://doi.org/10.1038/ng.3646openalex-snapshot

Lineage-specific and single-cell chromatin accessibility charts human hematopoiesis and leukemia evolution

inferredcites →https://doi.org/10.1038/ng.3844openalex-snapshot

Conserved roles of mouse DUX and human DUX4 in activating cleavage-stage genes and MERVL/HERVL retrotransposons

inferredcites →https://doi.org/10.1038/ng1104-1133openalex-snapshot

The Collaborative Cross, a community resource for the genetic analysis of complex traits

inferredcites →https://doi.org/10.1038/nprot.2014.030openalex-snapshot

Derivation and characterization of mouse embryonic stem cells from permissive and nonpermissive strains

inferredcites →https://doi.org/10.1038/nsmb.3066openalex-snapshot

Early embryonic-like cells are induced by downregulating replication-dependent chromatin assembly

inferredcites →https://doi.org/10.1038/s41588-017-0005-8openalex-snapshot

Molecular and functional variation in iPSC-derived sensory neurons

inferredcites →https://doi.org/10.1038/s41588-018-0046-7openalex-snapshot

Shared genetic effects on chromatin and gene expression indicate a role for enhancer priming in immune response

inferredcites →https://doi.org/10.1038/s41588-018-0223-8openalex-snapshot

Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci

inferredcites →https://doi.org/10.1073/pnas.1004584107openalex-snapshot

Human embryonic stem cells with biological and epigenetic characteristics similar to those of mouse ESCs

inferredcites →https://doi.org/10.1073/pnas.1209979109openalex-snapshot

Donor-dependent variations in hepatic differentiation from human-induced pluripotent stem cells

inferredcites →https://doi.org/10.1073/pnas.78.12.7634openalex-snapshot

Isolation of a pluripotent cell line from early mouse embryos cultured in medium conditioned by teratocarcinoma stem cells.

inferredcites →https://doi.org/10.1089/ten.tea.2008.0519openalex-snapshot

Six-Transmembrane Epithelial Antigen of the Prostate (STEAP1 and STEAP2)—Differentially Expressed by Murine and Human Mesenchymal Stem Cells

inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot

Fast and accurate short read alignment with Burrows–Wheeler transform

inferredcites →https://doi.org/10.1093/bioinformatics/btp328openalex-snapshot

rtracklayer: an R package for interfacing with genome browsers

inferredcites →https://doi.org/10.1093/bioinformatics/btp616openalex-snapshot

edgeR : a Bioconductor package for differential expression analysis of digital gene expression data

inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot

BEDTools: a flexible suite of utilities for comparing genomic features

inferredcites →https://doi.org/10.1093/bioinformatics/bts034openalex-snapshot

The sva package for removing batch effects and other unwanted variation in high-throughput experiments

inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot

Trimmomatic: a flexible trimmer for Illumina sequence data

inferredcites →https://doi.org/10.1093/bioinformatics/bty078openalex-snapshot

Hierarchical analysis of RNA-seq reads improves the accuracy of allele-specific expression

inferredcites →https://doi.org/10.1093/nar/gkv1272openalex-snapshot

The Dfam database of repetitive DNA families

inferredcites →https://doi.org/10.1093/nar/gky955openalex-snapshot

GENCODE reference annotation for the human and mouse genomes

inferredcites →https://doi.org/10.1126/science.282.5391.1145openalex-snapshot

Embryonic Stem Cell Lines Derived from Human Blastocysts

inferredcites →https://doi.org/10.1186/gb-2008-9-9-r137openalex-snapshot

Model-based Analysis of ChIP-Seq (MACS)

inferredcites →https://doi.org/10.1186/gb-2009-10-3-r25openalex-snapshot

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

inferredcites →https://doi.org/10.1186/gb-2012-13-8-418openalex-snapshot

An encyclopedia of mouse DNA elements (Mouse ENCODE)

inferredcites →https://doi.org/10.1196/annals.1335.020openalex-snapshot

Leukemia Inhibitory Factor and Human Embryo Implantation

inferredcites →https://doi.org/10.1242/dev.038893openalex-snapshot

Suppression of Erk signalling promotes ground state pluripotency in the mouse embryo

inferredcites →https://doi.org/10.1242/dev.108910openalex-snapshot

Stochastic NANOG fluctuations allow mouse embryonic stem cells to explore pluripotency

inferredcites →https://doi.org/10.1242/dev.129.10.2367openalex-snapshot

Depletion of definitive gut endoderm in Sox17 -null mutant mice

inferredcites →https://doi.org/10.1371/journal.pgen.1005793openalex-snapshot

Genetic Variation, Not Cell Type of Origin, Underlies the Majority of Identifiable Regulatory Differences in iPSCs

inferredcites →https://doi.org/10.1371/journal.pone.0050081openalex-snapshot

Generating Embryonic Stem Cells from the Inbred Mouse Strain DBA/2J, a Model of Glaucoma and Other Complex Diseases

inferredcites →https://doi.org/10.1371/journal.pone.0149291openalex-snapshot

Donor Dependent Variations in Hematopoietic Differentiation among Embryonic and Induced Pluripotent Stem Cell Lines

inferredcites →https://doi.org/10.1387/ijdb.7981049openalex-snapshot

Strain difference in establishment of mouse embryonic stem (ES) cell lines

inferredcites →https://doi.org/10.1387/ijdb.9184330openalex-snapshot

Reflections on the biology of embryonic stem (ES) cells

inferredcites →https://doi.org/10.1534/g3.114.013748openalex-snapshot

Quantitative Trait Locus Mapping Methods for Diversity Outbred Mice

inferredcites →https://doi.org/10.1534/g3.115.022087openalex-snapshot

The Mouse Universal Genotyping Array: From Substrains to Subspecies

inferredcites →https://doi.org/10.1534/g3.115.023739openalex-snapshot

argyle: An R Package for Analysis of Illumina Genotyping Arrays

inferredcites →https://doi.org/10.1534/g3.116.035527openalex-snapshot

Diversity Outbred Mice at 21: Maintaining Allelic Variation in the Face of Selection

inferredcites →https://doi.org/10.1534/genetics.111.138032openalex-snapshot

Ten Years of the Collaborative Cross

inferredcites →https://doi.org/10.1534/genetics.118.301595openalex-snapshot

R/qtl2: Software for Mapping Quantitative Trait Loci with High-Dimensional Data and Multiparent Populations

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.celrep.2020.02.073openalex-snapshot

A Susceptibility Locus on Chromosome 13 Profoundly Impacts the Stability of Genomic Imprinting in Mouse Pluripotent Stem Cells

inferred← citeshttps://doi.org/10.1016/j.tig.2019.04.003openalex-snapshot

High-Diversity Mouse Populations for Complex Traits

inferred← citeshttps://doi.org/10.1016/j.xgen.2021.100003openalex-snapshot

Regulation of protein abundance in genetically diverse mouse populations

inferred← citeshttps://doi.org/10.1101/2022.02.07.479436openalex-snapshot

Imputation of 3D genome structure by genetic-epigenetic interaction modeling in mice

inferred← citeshttps://doi.org/10.1371/journal.pgen.1008537openalex-snapshot

Integrative QTL analysis of gene expression and chromatin accessibility identifies multi-tissue patterns of genetic regulation

inferred← citeshttps://doi.org/10.7554/elife.88222openalex-snapshot

Imputation of 3D genome structure by genetic–epigenetic interaction modeling in mice

inferred← citeshttps://doi.org/10.7554/elife.88222.1openalex-snapshot

Imputation of 3D genome structure by genetic-epigenetic interaction modeling in mice

inferred← citeshttps://doi.org/10.7554/elife.88222.2openalex-snapshot

Imputation of 3D genome structure by genetic-epigenetic interaction modeling in mice

inferred← citeshttps://doi.org/10.7554/elife.88222.3openalex-snapshot

Imputation of 3D genome structure by genetic–epigenetic interaction modeling in mice

Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.