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Evolutionary dynamics of phage resistance in bacterial biofilms
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/(sici)1097-0290(19970905)55:5<747::aid-bit5>3.0.co;2-bopenalex-snapshot
New patterns of mixed-substrate utilization during batch growth ofEscherichia coli K12
inferredcites →https://doi.org/10.1002/(sici)1097-0290(19980320)57:6<718::aid-bit9>3.0.co;2-oopenalex-snapshot
A new combined differential-discrete cellular automaton approach for biofilm modeling: Application for growth in gel beads
inferredcites →https://doi.org/10.1002/(sici)1097-0290(19980405)58:1<101::aid-bit11>3.0.co;2-mopenalex-snapshot
Mathematical modeling of biofilm structure with a hybrid differential-discrete cellular automaton approach
inferredcites →https://doi.org/10.1002/bit.20544openalex-snapshot
A general description of detachment for multidimensional modelling of biofilms
inferredcites →https://doi.org/10.1002/elps.200305584openalex-snapshot
Microfluidic devices fabricated in Poly(dimethylsiloxane) for biological studies
inferredcites →https://doi.org/10.1007/s11270-011-1003-6openalex-snapshot
Modeling Adaptive Mutation of Enteric Bacteria in Surface Water Using Agent-Based Methods
inferredcites →https://doi.org/10.1016/b978-0-12-394805-2.00001-4openalex-snapshot
Phage Therapy Pharmacology
inferredcites →https://doi.org/10.1016/b978-0-12-800259-9.00004-4openalex-snapshot
Bacteria–Phage Interactions in Natural Environments
inferredcites →https://doi.org/10.1016/j.bej.2013.12.006openalex-snapshot
A microrespirometric method for the determination of stoichiometric and kinetic parameters of heterotrophic and autotrophic cultures
inferredcites →https://doi.org/10.1016/j.cub.2013.10.030openalex-snapshot
Solutions to the Public Goods Dilemma in Bacterial Biofilms
inferredcites →https://doi.org/10.1016/j.cub.2017.09.041openalex-snapshot
Vibrio cholerae Combines Individual and Collective Sensing to Trigger Biofilm Dispersal
inferredcites →https://doi.org/10.1016/j.ecolmodel.2008.09.004openalex-snapshot
A bunch of tiny individuals—Individual-based modeling for microbes
inferredcites →https://doi.org/10.1016/j.tim.2012.11.003openalex-snapshot
Phage–bacteria infection networks
inferredcites →https://doi.org/10.1016/j.watres.2004.04.037openalex-snapshot
Modeling the development of biofilm density including active bacteria, inert biomass, and extracellular polymeric substances
inferredcites →https://doi.org/10.1016/s0043-1354(01)00414-6openalex-snapshot
Non-steady state modeling of extracellular polymeric substances, soluble microbial products, and active and inert biomass
inferredcites →https://doi.org/10.1016/s0273-1223(98)00829-4openalex-snapshot
Activated Sludge Model No.2d, ASM2d
inferredcites →https://doi.org/10.1016/s0378-1097(04)00041-2openalex-snapshot
The interaction of phage and biofilms
inferredcites →https://doi.org/10.1016/s0966-842x(00)01913-2openalex-snapshot
Mechanisms of biofilm resistance to antimicrobial agents
inferredcites →https://doi.org/10.1038/ismej.2014.246openalex-snapshot
Extracellular matrix structure governs invasion resistance in bacterial biofilms
inferredcites →https://doi.org/10.1038/ismej.2015.208openalex-snapshot
Resource limitation drives spatial organization in microbial groups
inferredcites →https://doi.org/10.1038/ismej.2017.190openalex-snapshot
Phage mobility is a core determinant of phage–bacteria coexistence in biofilms
inferredcites →https://doi.org/10.1038/nrmicro.2016.84openalex-snapshot
Spatial structure, cooperation and competition in biofilms
inferredcites →https://doi.org/10.1038/nrmicro.2016.94openalex-snapshot
Biofilms: an emergent form of bacterial life
inferredcites →https://doi.org/10.1038/nrmicro1616openalex-snapshot
Microfabrication meets microbiology
inferredcites →https://doi.org/10.1038/nrmicro1838openalex-snapshot
Physiological heterogeneity in biofilms
inferredcites →https://doi.org/10.1038/nrmicro2315openalex-snapshot
Bacteriophage resistance mechanisms
inferredcites →https://doi.org/10.1038/nrmicro3096openalex-snapshot
Revenge of the phages: defeating bacterial defences
inferredcites →https://doi.org/10.1038/nrmicro3564openalex-snapshot
A century of the phage: past, present and future
inferredcites →https://doi.org/10.1038/nrmicro822openalex-snapshot
Population and evolutionary dynamics of phage therapy
inferredcites →https://doi.org/10.1038/s41564-017-0050-1openalex-snapshot
Dynamic biofilm architecture confers individual and collective mechanisms of viral protection
inferredcites →https://doi.org/10.1073/pnas.0504062102openalex-snapshot
Coevolutionary arms races between bacteria and bacteriophage
inferredcites →https://doi.org/10.1073/pnas.0609428103openalex-snapshot
Genomewide screens for Escherichia coli genes affecting growth of T7 bacteriophage
inferredcites →https://doi.org/10.1073/pnas.0609845104openalex-snapshot
Intracellular crowding defines the mode and sequence of substrate uptake by Escherichia coli and constrains its metabolic activity
inferredcites →https://doi.org/10.1073/pnas.0710150104openalex-snapshot
Genetic drift at expanding frontiers promotes gene segregation
inferredcites →https://doi.org/10.1073/pnas.090101397openalex-snapshot
Computation, prediction, and experimental tests of fitness for bacteriophage T7 mutants with permuted genomes
inferredcites →https://doi.org/10.1073/pnas.1200771109openalex-snapshot
Coexistence of phage and bacteria on the boundary of self-organized refuges
inferredcites →https://doi.org/10.1073/pnas.120163297openalex-snapshot
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
inferredcites →https://doi.org/10.1073/pnas.1520056113openalex-snapshot
Temperate phages both mediate and drive adaptive evolution in pathogen biofilms
inferredcites →https://doi.org/10.1073/pnas.1708954115openalex-snapshot
A growing microcolony can survive and support persistent propagation of virulent phages
inferredcites →https://doi.org/10.1080/08927014.2010.494251openalex-snapshot
Phage control of dual species biofilms ofPseudomonas fluorescensandStaphylococcus lentus
inferredcites →https://doi.org/10.1080/08927014.2012.662641openalex-snapshot
Mini-review: Convection around biofilms
inferredcites →https://doi.org/10.1086/282676openalex-snapshot
Community Equilibria and Stability, and an Extension of the Competitive Exclusion Principle
inferredcites →https://doi.org/10.1086/283134openalex-snapshot
Resource-Limited Growth, Competition, and Predation: A Model and Experimental Studies with Bacteria and Bacteriophage
inferredcites →https://doi.org/10.1086/284364openalex-snapshot
Constraints on the Coevolution of Bacteria and Virulent Phage: A Model, Some Experiments, and Predictions for Natural Communities
inferredcites →https://doi.org/10.1086/285884openalex-snapshot
Phage Therapy Revisited: The Population Biology of a Bacterial Infection and Its Treatment with Bacteriophage and Antibiotics
inferredcites →https://doi.org/10.1086/658991openalex-snapshot
Local Biotic Environment Shapes the Spatial Scale of Bacteriophage Adaptation to Bacteria
inferredcites →https://doi.org/10.1086/662668openalex-snapshot
The Evolution of Bacteriocin Production in Bacterial Biofilms
inferredcites →https://doi.org/10.1089/fpd.2008.0242openalex-snapshot
Kinetics of Phage-Mediated Biocontrol of Bacteria
inferredcites →https://doi.org/10.1098/rspb.2005.3086openalex-snapshot
The effect of a bacteriophage on diversification of the opportunistic bacterial pathogen, Pseudomonas aeruginosa
inferredcites →https://doi.org/10.1098/rspb.2012.2770openalex-snapshot
Cutting through the complexity of cell collectives
inferredcites →https://doi.org/10.1098/rspb.2013.0937openalex-snapshot
Rapidly fluctuating environments constrain coevolutionary arms races by impeding selective sweeps
inferredcites →https://doi.org/10.1101/086462openalex-snapshot
Phage mobility is a core determinant of phage-bacteria coexistence in biofilms
inferredcites →https://doi.org/10.1101/gr.6835308openalex-snapshot
A bacterial metapopulation adapts locally to phage predation despite global dispersal
inferredcites →https://doi.org/10.1111/1462-2920.12155openalex-snapshot
The extracellular matrix protects P seudomonas aeruginosa biofilms by limiting the penetration of tobramycin
inferredcites →https://doi.org/10.1111/1574-6976.12072openalex-snapshot
Bacteria–phage coevolution as a driver of ecological and evolutionary processes in microbial communities
inferredcites →https://doi.org/10.1111/ele.12625openalex-snapshot
Allele surfing promotes microbial adaptation from standing variation
inferredcites →https://doi.org/10.1111/j.1420-9101.2005.01026.xopenalex-snapshot
Spatial heterogeneity and the stability of host-parasite coexistence
inferredcites →https://doi.org/10.1111/j.1462-2920.2005.00787.xopenalex-snapshot
A framework for multidimensional modelling of activity and structure of multispecies biofilms
inferredcites →https://doi.org/10.1111/j.1462-2920.2011.02414.xopenalex-snapshot
iDynoMiCS: next‐generation individual‐based modelling of biofilms
inferredcites →https://doi.org/10.1128/aem.64.2.688-694.1998openalex-snapshot
Determination of Bacterial Cell Dry Mass by Transmission Electron Microscopy and Densitometric Image Analysis
inferredcites →https://doi.org/10.1128/aem.71.9.5254-5259.2005openalex-snapshot
Impact of Phages on Two-Species Bacterial Communities
inferredcites →https://doi.org/10.1128/jb.185.5.1485-1491.2003openalex-snapshot
Diffusion in Biofilms
inferredcites →https://doi.org/10.1128/jb.50.2.131-135.1945openalex-snapshot
The Burst Size Distribution in the Growth of Bacterial Viruses (Bacteriophages)
inferredcites →https://doi.org/10.1128/mbio.00240-17openalex-snapshot
Phage Inhibit Pathogen Dissemination by Targeting Bacterial Migrants in a Chronic Infection Model
inferredcites →https://doi.org/10.1128/mmbr.42.2.385-413.1978openalex-snapshot
Molecular genetics of bacteriophage P22
inferredcites →https://doi.org/10.1146/annurev.ecolsys.31.1.343openalex-snapshot
Mechanisms of Maintenance of Species Diversity
inferredcites →https://doi.org/10.1371/journal.pbio.2005971openalex-snapshot
Leaky resistance and the conditions for the existence of lytic bacteriophage
inferredcites →https://doi.org/10.1371/journal.pcbi.1000716openalex-snapshot
Emergence of Spatial Structure in Cell Groups and the Evolution of Cooperation
inferredcites →https://doi.org/10.1371/journal.pone.0094690openalex-snapshot
Phenotypic Resistance and the Dynamics of Bacterial Escape from Phage Control
inferredcites →https://doi.org/10.1890/10-0154.1openalex-snapshot
On the evidence for species coexistence: a critique of the coexistence program
inferredcites →https://doi.org/10.2166/wst.1999.0036openalex-snapshot
Activated Sludge Model No.2d, ASM2D
inferredcites →https://doi.org/10.2174/138920108785161604openalex-snapshot
The Use of Phages for the Removal of Infectious Biofilms
inferredcites →https://doi.org/10.2174/138920110790725410openalex-snapshot
Phage Therapy Pharmacology
inferredcites →https://doi.org/10.2202/1934-2659.1304openalex-snapshot
Determination of Kinetic and Stoichiometric Parameters of Pseudomonas putida F1 by Chemostat and In Situ Pulse Respirometry
inferredcites →https://doi.org/10.2307/1935611openalex-snapshot
A Complex Community in a Simple Habitat: An Experimental Study with Bacteria and Phage
inferredcites →https://doi.org/10.3390/v5030806openalex-snapshot
Understanding Bacteriophage Specificity in Natural Microbial Communities
inferredcites →https://doi.org/10.7554/elife.26163openalex-snapshot
Structural dynamics of RbmA governs plasticity of Vibrio cholerae biofilms
inferredcites →https://doi.org/10.7717/peerj.2261openalex-snapshot
Phage on tap–a quick and efficient protocol for the preparation of bacteriophage laboratory stocks
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1038/s41396-020-0705-4openalex-snapshot
Insights into the dynamics between viruses and their hosts in a hot spring microbial mat
inferred← citeshttps://doi.org/10.1101/2020.05.11.089839openalex-snapshot
MapA, a second large RTX adhesin, contributes to biofilm formation by Pseudomonas fluorescens
inferred← citeshttps://doi.org/10.1128/jb.00277-20openalex-snapshot
MapA, a Second Large RTX Adhesin Conserved across the Pseudomonads, Contributes to Biofilm Formation by Pseudomonas fluorescens
inferred← citeshttps://doi.org/10.3390/foods9060776openalex-snapshot
A Review of Salmonella and Campylobacter in Broiler Meat: Emerging Challenges and Food Safety Measures
inferred← citeshttps://doi.org/10.7287/peerj.8187v0.1/reviews/1openalex-snapshot
Peer Review #1 of "Benchmarking protocols for the metagenomic analysis of stream biofilm viromes (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.8187v0.1/reviews/2openalex-snapshot
Peer Review #2 of "Benchmarking protocols for the metagenomic analysis of stream biofilm viromes (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.8187v0.2/reviews/1openalex-snapshot
Peer Review #1 of "Benchmarking protocols for the metagenomic analysis of stream biofilm viromes (v0.2)"
inferred← citeshttps://doi.org/10.7287/peerj.8187v0.2/reviews/2openalex-snapshot
Peer Review #2 of "Benchmarking protocols for the metagenomic analysis of stream biofilm viromes (v0.2)"
inferred← citeshttps://doi.org/10.7717/peerj.8187openalex-snapshot
Benchmarking protocols for the metagenomic analysis of stream biofilm viromes
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