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A cis-regulatory change underlying the motor neuron-specific loss of terminal selector gene expression in immotile tunicate larvae

https://doi.org/10.1101/567719
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/cne.24353openalex-snapshot
The peripheral nervous system of the ascidian tadpole larva: Types of neurons and their synaptic networks
inferredcites →https://doi.org/10.1006/dbio.1996.0082openalex-snapshot
Mechanism of an Evolutionary Change in Muscle Cell Differentiation in Ascidians with Different Modes of Development
inferredcites →https://doi.org/10.1006/scdb.2000.0195openalex-snapshot
The evolution of anural larvae in molgulid ascidians
inferredcites →https://doi.org/10.1007/978-981-10-7545-2_16openalex-snapshot
Morphology and Physiology of the Ascidian Nervous Systems and the Effectors
inferredcites →https://doi.org/10.1007/978-981-10-7545-2_5openalex-snapshot
Electroporation in Ascidians: History, Theory and Protocols
inferredcites →https://doi.org/10.1007/bf00164028openalex-snapshot
Multiple origins of anural development in ascidians inferred from rDNA sequences
inferredcites →https://doi.org/10.1007/bf00310303openalex-snapshot
Nervous system of ascidian larvae: Caudal primary sensory neurons
inferredcites →https://doi.org/10.1007/s004270000118openalex-snapshot
Isolation of an early neural maker gene abundantly expressed in the nervous system of the ascidian, Halocynthia roretzi
inferredcites →https://doi.org/10.1007/s004270000124openalex-snapshot
The Mnx homeobox gene class defined by HB9 , MNR2 and amphioxus AmphiMnx
inferredcites →https://doi.org/10.1016/0012-1606(90)90353-kopenalex-snapshot
Interspecific hybridization between an anural and urodele ascidian: Differential expression of urodele features suggests multiple mechanisms control anural development
inferredcites →https://doi.org/10.1016/0012-1606(91)90131-lopenalex-snapshot
An evolutionary change in the muscle lineage of an anural ascidian embryo is restored by interspecific hybridization with a urodele ascidian
inferredcites →https://doi.org/10.1016/0896-6273(94)90354-9openalex-snapshot
Developmental expression of a novel murine homeobox gene (Chx10): Evidence for roles in determination of the neuroretina and inner nuclear layer
inferredcites →https://doi.org/10.1016/j.conb.2018.10.015openalex-snapshot
Neuronal identity: the neuron types of a simple chordate sibling, the tadpole larva of Ciona intestinalis
inferredcites →https://doi.org/10.1016/j.cub.2017.01.026openalex-snapshot
Circuit Homology between Decussating Pathways in the Ciona Larval CNS and the Vertebrate Startle-Response Pathway
inferredcites →https://doi.org/10.1016/j.ydbio.2004.04.001openalex-snapshot
The central nervous system of the ascidian larva: mitotic history of cells forming the neural tube in late embryonic Ciona intestinalis
inferredcites →https://doi.org/10.1016/j.ydbio.2007.10.005openalex-snapshot
Dynamic change in the expression of developmental genes in the ascidian central nervous system: Revisit to the tripartite model and the origin of the midbrain–hindbrain boundary region
inferredcites →https://doi.org/10.1016/j.ydbio.2011.05.584openalex-snapshot
Onecut is a direct neural-specific transcriptional activator of Rx in Ciona intestinalis
inferredcites →https://doi.org/10.1016/s0169-5347(03)00244-1openalex-snapshot
Lost along the way: the significance of evolution in reverse
inferredcites →https://doi.org/10.1038/nature05241openalex-snapshot
Deuterostome phylogeny reveals monophyletic chordates and the new phylum Xenoturbellida
inferredcites →https://doi.org/10.1038/nature09631openalex-snapshot
Ependymal cells of chordate larvae are stem-like cells that form the adult nervous system
inferredcites →https://doi.org/10.1038/nbt.1883openalex-snapshot
Full-length transcriptome assembly from RNA-Seq data without a reference genome
inferredcites →https://doi.org/10.1038/nmeth.3317openalex-snapshot
HISAT: a fast spliced aligner with low memory requirements
inferredcites →https://doi.org/10.1038/nn.2989openalex-snapshot
Coordinated regulation of cholinergic motor neuron traits through a conserved terminal selector gene
inferredcites →https://doi.org/10.1038/nrg.2016.39openalex-snapshot
Evolution by gene loss
inferredcites →https://doi.org/10.1038/s41598-019-38791-5openalex-snapshot
Automated behavioural analysis reveals the basic behavioural repertoire of the urochordate Ciona intestinalis
inferredcites →https://doi.org/10.1073/pnas.0806070105openalex-snapshot
Regulatory logic of neuronal diversity: Terminal selector genes and selector motifs
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/nar/gkw294openalex-snapshot
Redundans: an assembly pipeline for highly heterozygous genomes
inferredcites →https://doi.org/10.1093/nar/gkx1108openalex-snapshot
ANISEED 2017: extending the integrated ascidian database to the exploration and evolutionary comparison of genome-scale datasets
inferredcites →https://doi.org/10.1098/rsbl.2013.0068openalex-snapshot
Developmental mode influences diversification in ascidians
inferredcites →https://doi.org/10.1098/rstb.1931.0006openalex-snapshot
VI. Studies in tunicate development, Part II. - Abbreviation of development in the molgulidæ
inferredcites →https://doi.org/10.1101/pdb.prot5344openalex-snapshot
Isolation of Sea Squirt (Ciona) Gametes, Fertilization, Dechorionation, and Development: Figure 1.
inferredcites →https://doi.org/10.1101/pdb.prot5345openalex-snapshot
Electroporation of Transgenic DNAs in the Sea Squirt Ciona
inferredcites →https://doi.org/10.1111/j.1440-169x.1992.00017.xopenalex-snapshot
Vestigial Brain Melanocyte Development During Embryogenesis of an Anural Ascidian
inferredcites →https://doi.org/10.1111/j.1463-6395.1997.tb01004.xopenalex-snapshot
Nervous System of the Larva of the Ascidian Molgula citrina(Alder and Hancock, 1848)
inferredcites →https://doi.org/10.1126/science.1194167openalex-snapshot
Plasticity of Animal Genome Architecture Unmasked by Rapid Evolution of a Pelagic Tunicate
inferredcites →https://doi.org/10.1155/2014/961823openalex-snapshot
A Transcriptome Post-Scaffolding Method for Assembling High Quality Contigs
inferredcites →https://doi.org/10.1184/r1/6702233openalex-snapshot
Salmon: Accurate, Versatile and Ultrafast Quantification from RNA-seq Data using Lightweight-Alignment
inferredcites →https://doi.org/10.1186/1471-2202-11-6openalex-snapshot
A glycine receptor is involved in the organization of swimming movements in an invertebrate chordate
inferredcites →https://doi.org/10.1186/s13227-017-0074-xopenalex-snapshot
Evolutionary loss of melanogenesis in the tunicate Molgula occulta
inferredcites →https://doi.org/10.1186/s13227-018-0107-0openalex-snapshot
Developmental system drift in motor ganglion patterning between distantly related tunicates
inferredcites →https://doi.org/10.1242/dev.01201openalex-snapshot
Amphioxus and ascidian Dmbx homeobox genes give clues to the vertebrate origins of midbrain development
inferredcites →https://doi.org/10.1242/dev.026419openalex-snapshot
Gene regulatory networks underlying the compartmentalization of theCionacentral nervous system
inferredcites →https://doi.org/10.1242/dev.061507openalex-snapshot
Neuronal subtype specification in the spinal cord of a protovertebrate
inferredcites →https://doi.org/10.1242/dev.072108openalex-snapshot
Neural tube patterning by Ephrin, FGF and Notch signaling relays
inferredcites →https://doi.org/10.1242/dev.092361openalex-snapshot
Neuronal subtype specification in the spinal cord of a protovertebrate
inferredcites →https://doi.org/10.1242/dev.114488openalex-snapshot
Tissue-specific genome editing in Ciona embryos by CRISPR/Cas9
inferredcites →https://doi.org/10.1242/dev.128.11.1951openalex-snapshot
A regulatory cascade of three homeobox genes,ceh-10,ttx-3andceh-23, controls cell fate specification of a defined interneuron class inC. elegans
inferredcites →https://doi.org/10.1242/dev.128.15.2893openalex-snapshot
Gene expression profiles inCiona intestinalistailbud embryos
inferredcites →https://doi.org/10.1242/jeb.00235openalex-snapshot
Direct evidence for the role of pigment cells in the brain of ascidian larvae by laser ablation
inferredcites →https://doi.org/10.1242/jeb.01420openalex-snapshot
Pigmentation in the sensory organs of the ascidian larva is essential for normal behavior
inferredcites →https://doi.org/10.1242/jeb.02421openalex-snapshot
Development of swimming behaviour in the larva of the ascidianCiona intestinalis
inferredcites →https://doi.org/10.1242/jeb.177972openalex-snapshot
Photoreceptor specialization and the visuomotor repertoire of the primitive chordate Ciona
inferredcites →https://doi.org/10.1371/journal.pbio.0040225openalex-snapshot
Formation of the Ascidian Epidermal Sensory Neurons: Insights into the Origin of the Chordate Peripheral Nervous System
inferredcites →https://doi.org/10.1371/journal.pone.0122879openalex-snapshot
Morphological Differences between Larvae of the Ciona intestinalis Species Complex: Hints for a Valid Taxonomic Definition of Distinct Species
inferredcites →https://doi.org/10.1523/jneurosci.4993-05.2006openalex-snapshot
alx , a Zebrafish Homolog of Chx10 , Marks Ipsilateral Descending Excitatory Interneurons That Participate in the Regulation of Spinal Locomotor Circuits
inferredcites →https://doi.org/10.2108/zsj.27.191openalex-snapshot
Neural Map of the Larval Central Nervous System in the AscidianCiona intestinalis
inferredcites →https://doi.org/10.4282/sosj.35.21openalex-snapshot
Cellulose production and the evolution of the sessile lifestyle in ascidians
inferredcites →https://doi.org/10.48580/dgjc7-3fxopenalex-snapshot
Ascidiacea World Database
inferredcites →https://doi.org/10.7287/peerj.preprints.505openalex-snapshot
Evaluating a lightweight transcriptome assembly pipeline on two closely related ascidian species
inferredcites →https://doi.org/10.7287/peerj.preprints.505v1openalex-snapshot
Evaluating a lightweight transcriptome assembly pipeline on two closely related ascidian species
inferredcites →https://doi.org/10.7554/elife.03728openalex-snapshot
Divergent mechanisms regulate conserved cardiopharyngeal development and gene expression in distantly related ascidians
inferredcites →https://doi.org/10.7554/elife.16962openalex-snapshot
The CNS connectome of a tadpole larva of Ciona intestinalis (L.) highlights sidedness in the brain of a chordate sibling
inferredcites →https://doi.org/10.7554/elife.44753openalex-snapshot
Parallel visual circuitry in a basal chordate

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/bs.ctdb.2020.10.001openalex-snapshot
Transitional chordates and vertebrate origins: Tunicates
inferred← citeshttps://doi.org/10.1093/icb/icab022openalex-snapshot
The Degenerate Tale of Ascidian Tails
inferred← citeshttps://doi.org/10.1186/s13227-019-0125-6openalex-snapshot
Regulation and evolution of muscle development in tunicates
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