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Pan-GWAS of Streptococcus agalactiae highlights lineage-specific genes associated with virulence and niche adaptation

https://doi.org/10.1101/574152
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Expression of the MtsA lipoprotein of Streptococcus agalactiae A909 is regulated by manganese and iron
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Toxin–antitoxin systems: why so many, what for?
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The advent of genome-wide association studies for bacteria
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Rapid detection of the “highly virulent” group B streptococcus ST-17 clone
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Role of capsular polysaccharide in Group B Streptococccus interactions with dendritic cells
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Capsular polysaccharide of Group B Streptococcus mediates biofilm formation in the presence of human plasma
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A history of neonatal group B streptococcus with its related morbidity and mortality rates in the United States
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Group B streptococcus vaccination in pregnant women with or without HIV in Africa: a non-randomised phase 2, open-label, multicentre trial
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Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes
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Streptococcus agalactiae clones infecting humans were selected and fixed through the extensive use of tetracycline
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Maternal colonization with Streptococcus agalactiae and associated stillbirth and neonatal disease in coastal Kenya
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FbsC, a Novel Fibrinogen-binding Protein, Promotes Streptococcus agalactiae-Host Cell Interactions
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Vancomycin: A 50-Year Reassessment
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Genotypic Diversity and Serotype Distribution of Group B Streptococcus Isolated from Women Before and After Delivery
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SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
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Prokka: rapid prokaryotic genome annotation
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Trimmomatic: a flexible trimmer for Illumina sequence data
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Roary: rapid large-scale prokaryote pan genome analysis
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Variation in Reported Neonatal Group B Streptococcal Disease Incidence in Developing Countries
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Maternal Colonization With Group B Streptococcus and Serotype Distribution Worldwide: Systematic Review and Meta-analyses
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Group B Streptococcus Biofilm Regulatory Protein A Contributes to Bacterial Physiology and Innate Immune Resistance
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Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
inferredcites →https://doi.org/10.1099/jmm.0.46423-0openalex-snapshot
Role of two-component systems in the virulence of Streptococcus pneumoniae
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Temporal population structure of invasive Group B Streptococcus during a period of rising disease incidence shows expansion of a CC17 clone
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Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements
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Group B Streptococcus CovR regulation modulates host immune signalling pathways to promote vaginal colonization
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BibA: a novel immunogenic bacterial adhesin contributing to group B Streptococcus survival in human blood
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Microreview: Type IV secretion systems: versatility and diversity in function
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The S taphylococcus aureus Opp1 ABC transporter imports nickel and cobalt in zinc‐depleted conditions and contributes to virulence
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Streptococcus gallolyticus subsp. gallolyticus from Human and Animal Origins: Genetic Diversity, Antimicrobial Susceptibility, and Characterization of a Vancomycin-Resistant Calf Isolate Carrying a vanA -Tn 1546 -Like Element
inferredcites →https://doi.org/10.1128/aem.70.10.6047-6052.2004openalex-snapshot
Galactose Metabolism by Streptococcus mutans
inferredcites →https://doi.org/10.1128/cmr.18.1.102-127.2005openalex-snapshot
Surface Proteins ofStreptococcus agalactiaeand Related Proteins in Other Bacterial Pathogens
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MntABC and MntH Contribute to Systemic Staphylococcus aureus Infection by Competing with Calprotectin for Nutrient Manganese
inferredcites →https://doi.org/10.1128/iai.70.5.2408-2413.2002openalex-snapshot
The Group B Streptococcal C5a Peptidase Is Both a Specific Protease and an Invasin
inferredcites →https://doi.org/10.1128/iai.71.5.2656-2664.2003openalex-snapshot
MtsABC Is Important for Manganese and Iron Transport, Oxidative Stress Resistance, and Virulence of Streptococcus pyogenes
inferredcites →https://doi.org/10.1128/iai.73.6.3342-3350.2005openalex-snapshot
The SrtA Sortase of Streptococcus agalactiae Is Required for Cell Wall Anchoring of Proteins Containing the LPXTG Motif, for Adhesion to Epithelial Cells, and for Colonization of the Mouse Intestine
inferredcites →https://doi.org/10.1128/jb.00370-09openalex-snapshot
CsrRS Regulates Group BStreptococcusVirulence Gene Expression in Response to Environmental pH: a New Perspective on Vaccine Development
inferredcites →https://doi.org/10.1128/jb.00429-15openalex-snapshot
Whole-Genome Comparison Uncovers Genomic Mutations between Group B Streptococci Sampled from Infected Newborns and Their Mothers
inferredcites →https://doi.org/10.1128/jb.184.3.785-793.2002openalex-snapshot
Galactose and Lactose Genes from the Galactose-Positive Bacterium Streptococcus salivarius and the Phylogenetically Related Galactose-Negative Bacterium Streptococcus thermophilus : Organization, Sequence, Transcription, and Activity of the gal Gene Products
inferredcites →https://doi.org/10.1128/jcm.00117-07openalex-snapshot
Serotype IX, a Proposed New Streptococcus agalactiae Serotype
inferredcites →https://doi.org/10.1128/jcm.01615-16openalex-snapshot
Serotype Distribution, Population Structure, and Antimicrobial Resistance of Group B Streptococcus Strains Recovered from Colonized Pregnant Women
inferredcites →https://doi.org/10.1128/jcm.01781-14openalex-snapshot
Antimicrobial Susceptibilities of Group B Streptococcus Isolates from Prenatal Screening Samples
inferredcites →https://doi.org/10.1128/jcm.03554-13openalex-snapshot
Characterization of Invasive Group B Streptococcus Strains from the Greater Toronto Area, Canada
inferredcites →https://doi.org/10.1128/jcm.42.5.2161-2167.2004openalex-snapshot
Hyperinvasive Neonatal Group B Streptococcus Has Arisen from a Bovine Ancestor
inferredcites →https://doi.org/10.1128/mbio.00178-10openalex-snapshot
Emergence and Global Dissemination of Host-Specific Streptococcus agalactiae Clones
inferredcites →https://doi.org/10.1128/mmbr.00014-09openalex-snapshot
Streptococcus Adherence and Colonization
inferredcites →https://doi.org/10.1128/mmbr.00023-09openalex-snapshot
Biological Diversity of Prokaryotic Type IV Secretion Systems
inferredcites →https://doi.org/10.1128/msystems.00074-17openalex-snapshot
Parallel Evolution of Group B Streptococcus Hypervirulent Clonal Complex 17 Unveils New Pathoadaptive Mutations
inferredcites →https://doi.org/10.1136/archdischild-2016-311419openalex-snapshot
Challenges in reducing group B Streptococcus disease in African settings
inferredcites →https://doi.org/10.1186/1471-2105-11-595openalex-snapshot
BIGSdb: Scalable analysis of bacterial genome variation at the population level
inferredcites →https://doi.org/10.1186/1471-2164-12-402openalex-snapshot
BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons
inferredcites →https://doi.org/10.1186/1471-2164-14-252openalex-snapshot
Reductive evolution in Streptococcus agalactiae and the emergence of a host adapted lineage
inferredcites →https://doi.org/10.1186/gb-2014-15-3-r46openalex-snapshot
Kraken: ultrafast metagenomic sequence classification using exact alignments
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The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes
inferredcites →https://doi.org/10.1186/s13059-016-1108-8openalex-snapshot
Rapid scoring of genes in microbial pan-genome-wide association studies with Scoary
inferredcites →https://doi.org/10.1186/s13742-015-0047-8openalex-snapshot
Second-generation PLINK: rising to the challenge of larger and richer datasets
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Association of Group B Streptococcus Colonization and Bovine Exposure: A Prospective Cross-Sectional Cohort Study
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FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
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progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement
inferredcites →https://doi.org/10.1371/journal.pone.0026707openalex-snapshot
CcpA Ensures Optimal Metabolic Fitness of Streptococcus pneumoniae
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Type-IVC Secretion System: A Novel Subclass of Type IV Secretion System (T4SS) Common Existing in Gram-Positive Genus Streptococcus
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Regulation of PI-2b Pilus Expression in Hypervirulent Streptococcus agalactiae ST-17 BM110
inferredcites →https://doi.org/10.1371/journal.ppat.1000422openalex-snapshot
Dual Role for Pilus in Adherence to Epithelial Cells and Biofilm Formation in Streptococcus agalactiae
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Group B Streptococcus Late-Onset Disease: 2003–2010
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Understanding the Regulation of Group B Streptococcal Virulence Factors
inferredcites →https://doi.org/10.3201/eid2212.151447openalex-snapshot
Streptococcus agalactiae Serotype IV in Humans and Cattle, Northern Europe1
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Biofilm formation by Streptococcus agalactiae: influence of environmental conditions and implicated virulence factors
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Analysis of the type II-A CRISPR-Cas system of Streptococcus agalactiae reveals distinctive features according to genetic lineages
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Interaction of Streptococcus agalactiae and Cellular Innate Immunity in Colonization and Disease
inferredcites →https://doi.org/10.3389/fmicb.2014.00677openalex-snapshot
Functional validation of putative toxin-antitoxin genes from the Gram-positive pathogen Streptococcus pneumoniae: phd-doc is the fourth bona-fide operon
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Group B Streptococcal Colonization, Molecular Characteristics, and Epidemiology
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A Perspective on the Potential Zoonotic Role of Streptococcus agalactiae: Searching for a Missing Link in Alternative Transmission Routes

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inferred← citeshttps://doi.org/10.1101/2021.01.12.426470openalex-snapshot
Comparative analysis of whole genome sequences of Leptospira spp. from RefSeq database provide interspecific divergence and repertoire of virulence factors
inferred← citeshttps://doi.org/10.70675/9b3ab669z1d6az4018z9ad6z0acc51104205openalex-snapshot
Rôle physiologique des polyamines et caractérisation génétique et fonctionnelle de leurs transporteurs chez Streptococcus agalactiae
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