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Epistatic Networks Associated with Parent-of-Origin Effects on Metabolic Traits

https://doi.org/10.1101/579748
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Genomic imprinting and Wilms' tumor
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Evidence for parent of origin effect in late‐onset Alzheimer disease
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Further evidence of a maternal parent‐of‐origin effect on chromosome 10 in late‐onset Alzheimer's disease
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Physiological functions of imprinted genes
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Asynchronous DNA replication between 15q11.2q12 homologs: cytogenetic evidence for maternal imprinting and delayed replication
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Calculation in five loops of a multiloop diagram of special form
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The receptor CD44 is associated with systemic insulin resistance and proinflammatory macrophages in human adipose tissue
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A framework for detecting and characterizing genetic background-dependent imprinting effects
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The importance of context to the genetic architecture of diabetes-related traits is revealed in a genome-wide scan of a LG/J × SM/J murine model
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Ectopic expression of Neuronatin potentiates adipogenesis through enhanced phosphorylation of cAMP-response element-binding protein in 3T3-L1 cells
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Adipose extracellular matrix remodelling in obesity and insulin resistance
inferredcites →https://doi.org/10.1016/j.cell.2013.11.043openalex-snapshot
The Architecture of Parent-of-Origin Effects in Mice
inferredcites →https://doi.org/10.1016/j.cell.2013.12.012openalex-snapshot
What We Talk About When We Talk About Fat
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Zac1 Regulates an Imprinted Gene Network Critically Involved in the Control of Embryonic Growth
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The Wilms tumor protein WT1 stimulates transcription of the gene encoding insulin-like growth factor binding protein 5 (IGFBP5)
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The role of imprinted genes in humans
inferredcites →https://doi.org/10.1016/j.mce.2010.01.033openalex-snapshot
ZAC1 target genes and pituitary tumorigenesis
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Slipping while sleeping? Trinucleotide repeat expansions in germ cells
inferredcites →https://doi.org/10.1016/j.redox.2017.04.012openalex-snapshot
Sex matters: The effects of biological sex on adipose tissue biology and energy metabolism
inferredcites →https://doi.org/10.1016/j.tem.2015.05.006openalex-snapshot
The extracellular matrix and insulin resistance
inferredcites →https://doi.org/10.1016/j.tig.2005.06.008openalex-snapshot
A census of mammalian imprinting
inferredcites →https://doi.org/10.1016/j.ygeno.2006.07.005openalex-snapshot
The human HYMAI/PLAGL1 differentially methylated region acts as an imprint control region in mice
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The mouse Zac1 locus: basis for imprinting and comparison with human ZAC
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The interplay between nutrients and the adipose tissue
inferredcites →https://doi.org/10.1038/nature08625openalex-snapshot
Parental origin of sequence variants associated with complex diseases
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Biological, clinical and population relevance of 95 loci for blood lipids
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Distinct physiological and behavioural functions for parental alleles of imprinted Grb10
inferredcites →https://doi.org/10.1038/nature10726openalex-snapshot
Topoisomerase inhibitors unsilence the dormant allele of Ube3a in neurons
inferredcites →https://doi.org/10.1038/ncb2922openalex-snapshot
Visceral and subcutaneous fat have different origins and evidence supports a mesothelial source
inferredcites →https://doi.org/10.1038/ncomms9951openalex-snapshot
Soluble LR11/SorLA represses thermogenesis in adipose tissue and correlates with BMI in humans
inferredcites →https://doi.org/10.1038/ng.3274openalex-snapshot
Genetic conflict reflected in tissue-specific maps of genomic imprinting in human and mouse
inferredcites →https://doi.org/10.1038/ng.493openalex-snapshot
The imprinted DLK1-MEG3 gene region on chromosome 14q32.2 alters susceptibility to type 1 diabetes
inferredcites →https://doi.org/10.1038/ng.609openalex-snapshot
Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis
inferredcites →https://doi.org/10.1038/ng.833openalex-snapshot
Identification of an imprinted master trans regulator at the KLF14 locus related to multiple metabolic phenotypes
inferredcites →https://doi.org/10.1038/ng1699openalex-snapshot
Deletion of Peg10, an imprinted gene acquired from a retrotransposon, causes early embryonic lethality
inferredcites →https://doi.org/10.1038/nrg3543openalex-snapshot
Genomic imprinting and parent-of-origin effects on complex traits
inferredcites →https://doi.org/10.1038/oby.2003.189openalex-snapshot
Diet, Obesity, and Hyperglycemia in LG/J and SM/J Mice
inferredcites →https://doi.org/10.1038/oby.2010.141openalex-snapshot
Diet‐Dependent Genetic and Genomic Imprinting Effects on Obesity in Mice
inferredcites →https://doi.org/10.1038/s12276-018-0066-5openalex-snapshot
Implications of publicly available genomic data resources in searching for therapeutic targets of obesity and type 2 diabetes
inferredcites →https://doi.org/10.1038/s41467-019-09301-yopenalex-snapshot
Parent of origin genetic effects on methylation in humans are common and influence complex trait variation
inferredcites →https://doi.org/10.1038/s41588-018-0154-4openalex-snapshot
Using an atlas of gene regulation across 44 human tissues to inform complex disease- and trait-associated variation
inferredcites →https://doi.org/10.1038/s41598-017-07497-xopenalex-snapshot
Ndrg1 promotes adipocyte differentiation and sustains their function
inferredcites →https://doi.org/10.1038/s42003-018-0267-4openalex-snapshot
Parent-of-origin effects on quantitative phenotypes in a large Hutterite pedigree
inferredcites →https://doi.org/10.1038/sj.ejhg.5200938openalex-snapshot
The epsilon-sarcoglycan gene (SGCE), mutated in myoclonus-dystonia syndrome, is maternally imprinted
inferredcites →https://doi.org/10.1073/pnas.041398998openalex-snapshot
Targeted disruption of the Kcnq1 gene produces a mouse model of Jervell and Lange– Nielsen Syndrome
inferredcites →https://doi.org/10.1073/pnas.95.14.8181openalex-snapshot
Mutations in the Δ7-sterol reductase gene in patients with the Smith–Lemli–Opitz syndrome
inferredcites →https://doi.org/10.1074/mcp.m116.065524openalex-snapshot
Extended Multiplexing of Tandem Mass Tags (TMT) Labeling Reveals Age and High Fat Diet Specific Proteome Changes in Mouse Epididymal Adipose Tissue
inferredcites →https://doi.org/10.1086/302039openalex-snapshot
Imprinted Expression of SNRPN in Human Preimplantation Embryos
inferredcites →https://doi.org/10.1093/bioinformatics/btp616openalex-snapshot
edgeR : a Bioconductor package for differential expression analysis of digital gene expression data
inferredcites →https://doi.org/10.1093/bioinformatics/btp696openalex-snapshot
pegas: an R package for population genetics with an integrated–modular approach
inferredcites →https://doi.org/10.1093/bioinformatics/bts635openalex-snapshot
STAR: ultrafast universal RNA-seq aligner
inferredcites →https://doi.org/10.1093/hmg/ddr099openalex-snapshot
Maternal germline-specific effect of DNA ligase I on CTG/CAG instability
inferredcites →https://doi.org/10.1093/jb/mvw094openalex-snapshot
Regulation and physiological functions of mammalian phospholipase C
inferredcites →https://doi.org/10.1093/nar/29.1.275openalex-snapshot
The imprinted gene and parent-of-origin effect database
inferredcites →https://doi.org/10.1093/nar/gki475openalex-snapshot
WebGestalt: an integrated system for exploring gene sets in various biological contexts
inferredcites →https://doi.org/10.1097/00005792-199803000-00005openalex-snapshot
Prader-Willi and Angelman Syndromes: Disorders of Genomic Imprinting
inferredcites →https://doi.org/10.1101/gr.175919.114openalex-snapshot
A systems-level approach to parental genomic imprinting: the imprinted gene network includes extracellular matrix genes and regulates cell cycle exit and differentiation
inferredcites →https://doi.org/10.1101/gr.3303505openalex-snapshot
Genome-wide prediction of imprinted murine genes
inferredcites →https://doi.org/10.1128/mcb.22.22.8015-8025.2002openalex-snapshot
Early B-Cell Factor (O/E-1) Is a Promoter of Adipogenesis and Involved in Control of Genes Important for Terminal Adipocyte Differentiation
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Epigenetic mutations of the imprinted IGF2-H19 domain in Silver–Russell syndrome (SRS): results from a large cohort of patients with SRS and SRS-like phenotypes
inferredcites →https://doi.org/10.1136/jmg.30.2.101openalex-snapshot
Imprinting in Albright's hereditary osteodystrophy.
inferredcites →https://doi.org/10.1146/annurev-neuro-061010-113708openalex-snapshot
New Perspectives on Genomic Imprinting, an Essential and Multifaceted Mode of Epigenetic Control in the Developing and Adult Brain
inferredcites →https://doi.org/10.1158/0008-5472.can-05-1480openalex-snapshot
An Imprinted Locus Epistatically Influences Nstr1 and Nstr2 to Control Resistance to Nerve Sheath Tumors in a Neurofibromatosis Type 1 Mouse Model
inferredcites →https://doi.org/10.1186/s12864-015-1592-3openalex-snapshot
Using whole-genome sequences of the LG/J and SM/J inbred mouse strains to prioritize quantitative trait genes and nucleotides
inferredcites →https://doi.org/10.1186/s12915-014-0099-8openalex-snapshot
Antagonistic roles in fetal development and adult physiology for the oppositely imprinted Grb10 and Dlk1genes
inferredcites →https://doi.org/10.1186/s12986-019-0339-6openalex-snapshot
Dietary iron interacts with genetic background to influence glucose homeostasis
inferredcites →https://doi.org/10.1186/s13059-015-0672-7openalex-snapshot
Allele-specific binding of ZFP57 in the epigenetic regulation of imprinted and non-imprinted monoallelic expression
inferredcites →https://doi.org/10.1186/s13062-014-0032-7openalex-snapshot
Once upon a time the cell membranes: 175 years of cell boundary research
inferredcites →https://doi.org/10.1194/jlr.m006957openalex-snapshot
Genetic, epigenetic, and gene-by-diet interaction effects underlie variation in serum lipids in a LG/J×SM/J murine model
inferredcites →https://doi.org/10.1194/jlr.m084947openalex-snapshot
Metabolic importance of adipose tissue monoacylglycerol acyltransferase 1 in mice and humans
inferredcites →https://doi.org/10.1194/jlr.r700005-jlr200openalex-snapshot
Thematic review series: Adipocyte Biology. Adipose tissue function and plasticity orchestrate nutritional adaptation
inferredcites →https://doi.org/10.1210/jc.2015-2914openalex-snapshot
Histologic and Molecular Profile of Pediatric Insulinomas: Evidence of a Paternal Parent-of-Origin Effect
inferredcites →https://doi.org/10.1242/jcs.023820openalex-snapshot
The extracellular matrix at a glance
inferredcites →https://doi.org/10.12703/p6-75openalex-snapshot
Known unknowns for allele-specific expression and genomic imprinting effects
inferredcites →https://doi.org/10.1371/journal.pgen.0030065openalex-snapshot
Identification of the Imprinted KLF14 Transcription Factor Undergoing Human-Specific Accelerated Evolution
inferredcites →https://doi.org/10.1371/journal.pgen.1002256openalex-snapshot
Genetic Effects at Pleiotropic Loci Are Context-Dependent with Consequences for the Maintenance of Genetic Variation in Populations
inferredcites →https://doi.org/10.1371/journal.pone.0085477openalex-snapshot
Paternal Allele Influences High Fat Diet-Induced Obesity
inferredcites →https://doi.org/10.1371/journal.pone.0089680openalex-snapshot
A Selected Core Microbiome Drives the Early Stages of Three Popular Italian Cheese Manufactures
inferredcites →https://doi.org/10.1534/genetics.107.080697openalex-snapshot
Maternal Effects as the Cause of Parent-of-Origin Effects That Mimic Genomic Imprinting
inferredcites →https://doi.org/10.18637/jss.v032.i10openalex-snapshot
The VGAM Package for Categorical Data Analysis
inferredcites →https://doi.org/10.3177/jnsv.56.335openalex-snapshot
Thiamine Prevents Obesity and Obesity-Associated Metabolic Disorders in OLETF Rats
inferredcites →https://doi.org/10.3390/nu10101437openalex-snapshot
Ironing out the Details: Untangling Dietary Iron and Genetic Background in Diabetes
inferredcites →https://doi.org/10.4161/21623945.2014.985009openalex-snapshot
Wt1, the mesothelium and the origins and heterogeneity of visceral fat progenitors
inferredcites →https://doi.org/10.4161/adip.19752openalex-snapshot
Peri-adipocyte ECM remodeling in obesity and adipose tissue fibrosis
inferredcites →https://doi.org/10.4161/adip.24075openalex-snapshot
Sex differences in adipose tissue
inferredcites →https://doi.org/10.7554/elife.38080openalex-snapshot
Dlk1-Dio3 locus-derived lncRNAs perpetuate postmitotic motor neuron cell fate and subtype identity
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