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An ATAC-seq atlas of chromatin accessibility in mouse tissues
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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The Role of Chromatin during Transcription
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Epigenomic Analysis of Multilineage Differentiation of Human Embryonic Stem Cells
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The International Human Epigenome Consortium: A Blueprint for Scientific Collaboration and Discovery
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Understanding Tissue-Specific Gene Regulation
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Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
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Optimal housing temperatures for mice to mimic the thermal environment of humans: An experimental study
inferredcites →https://doi.org/10.1016/j.tcb.2017.10.008openalex-snapshot
Epigenome in Early Mammalian Development: Inheritance, Reprogramming and Establishment
inferredcites →https://doi.org/10.1016/s1097-2765(00)00025-3openalex-snapshot
Regulation of Skeletal Myogenesis by Association of the MEF2 Transcription Factor with Class II Histone Deacetylases
inferredcites →https://doi.org/10.1038/35057062openalex-snapshot
Initial sequencing and analysis of the human genome
inferredcites →https://doi.org/10.1038/nature08262openalex-snapshot
Initiation of myoblast to brown fat switch by a PRDM16–C/EBP-β transcriptional complex
inferredcites →https://doi.org/10.1038/nature11243openalex-snapshot
A map of the cis-regulatory sequences in the mouse genome
inferredcites →https://doi.org/10.1038/nature11247openalex-snapshot
An integrated encyclopedia of DNA elements in the human genome
inferredcites →https://doi.org/10.1038/nature12749openalex-snapshot
Chromatin dynamics during cellular reprogramming
inferredcites →https://doi.org/10.1038/nature13992openalex-snapshot
A comparative encyclopedia of DNA elements in the mouse genome
inferredcites →https://doi.org/10.1038/nature14248openalex-snapshot
Integrative analysis of 111 reference human epigenomes
inferredcites →https://doi.org/10.1038/nature14590openalex-snapshot
Single-cell chromatin accessibility reveals principles of regulatory variation
inferredcites →https://doi.org/10.1038/ncomms15089openalex-snapshot
A mouse tissue transcription factor atlas
inferredcites →https://doi.org/10.1038/nmeth.2688openalex-snapshot
Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
inferredcites →https://doi.org/10.1038/nmeth.4396openalex-snapshot
An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues
inferredcites →https://doi.org/10.1038/nrg.2018.4openalex-snapshot
Integrative omics for health and disease
inferredcites →https://doi.org/10.1038/nrg3788openalex-snapshot
Identifying and mitigating bias in next-generation sequencing methods for chromatin biology
inferredcites →https://doi.org/10.1038/nrm.2016.8openalex-snapshot
A decade of transcription factor-mediated reprogramming to pluripotency
inferredcites →https://doi.org/10.1038/s41467-018-05887-xopenalex-snapshot
High-throughput chromatin accessibility profiling at single-cell resolution
inferredcites →https://doi.org/10.1038/s41467-018-07771-0openalex-snapshot
A rapid and robust method for single cell chromatin accessibility profiling
inferredcites →https://doi.org/10.1038/s41580-018-0008-zopenalex-snapshot
Dynamics of the epigenetic landscape during the maternal-to-zygotic transition
inferredcites →https://doi.org/10.1038/sdata.2016.109openalex-snapshot
An atlas of transcriptional, chromatin accessibility, and surface marker changes in human mesoderm development
inferredcites →https://doi.org/10.1038/sdata.2017.185openalex-snapshot
An RNA-Seq atlas of gene expression in mouse and rat normal tissues
inferredcites →https://doi.org/10.1073/pnas.1701495114openalex-snapshot
Neurog2 and Ascl1 together regulate a postmitotic derepression circuit to govern laminar fate specification in the murine neocortex
inferredcites →https://doi.org/10.1073/pnas.88.9.3807openalex-snapshot
The different tissue transcription patterns of genes for HNF-1, C/EBP, HNF-3, and HNF-4, protein factors that govern liver-specific transcription.
inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot
BEDTools: a flexible suite of utilities for comparing genomic features
inferredcites →https://doi.org/10.1093/gigascience/giw015openalex-snapshot
Estimating the total number of phosphoproteins and phosphorylation sites in eukaryotic proteomes
inferredcites →https://doi.org/10.1093/gigascience/gix024openalex-snapshot
A reference human genome dataset of the BGISEQ-500 sequencer
inferredcites →https://doi.org/10.1093/gigascience/gix120openalex-snapshot
SOAPnuke: a MapReduce acceleration-supported software for integrated quality control and preprocessing of high-throughput sequencing data
inferredcites →https://doi.org/10.1093/gigascience/giy117openalex-snapshot
Single-cell RNA-seq reveals dynamic transcriptome profiling in human early neural differentiation
inferredcites →https://doi.org/10.1101/gr.6654808openalex-snapshot
Genome-wide mapping and analysis of active promoters in mouse embryonic stem cells and adult organs
inferredcites →https://doi.org/10.1126/science.1058040openalex-snapshot
The Sequence of the Human Genome
inferredcites →https://doi.org/10.1126/science.aab1601openalex-snapshot
Multiplex single-cell profiling of chromatin accessibility by combinatorial cellular indexing
inferredcites →https://doi.org/10.1128/mcb.16.1.437openalex-snapshot
Quantitative Discrimination of MEF2 Sites
inferredcites →https://doi.org/10.1186/gb-2005-6-4-r33openalex-snapshot
Promoter features related to tissue specificity as measured by Shannon entropy
inferredcites →https://doi.org/10.1186/gb-2008-9-9-r137openalex-snapshot
Model-based Analysis of ChIP-Seq (MACS)
inferredcites →https://doi.org/10.1186/s13059-019-1654-yopenalex-snapshot
Reproducible inference of transcription factor footprints in ATAC-seq and DNase-seq datasets using protocol-specific bias modeling
inferredcites →https://doi.org/10.1214/11-aoas466openalex-snapshot
Measuring reproducibility of high-throughput experiments
inferredcites →https://doi.org/10.6084/m9.figshare.c.4436264openalex-snapshot
An ATAC-seq atlas of chromatin accessibility in mouse tissues
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.2139/ssrn.4755772openalex-extracted
Cross-Validation of Conserved Osteoblast-Specific Enhancers Illuminates Bone Diseases and Early Skeletal Evolution
inferred← citeshttps://doi.org/10.1007/s11427-024-2935-7openalex-snapshot
Evolutionary repeatability of chromatin accessibility in the hippocampus between echolocating bats and soft-furred tree mice
inferred← citeshttps://doi.org/10.1016/j.jmb.2020.07.023openalex-snapshot
Visualization and Sequencing of Accessible Chromatin Reveals Cell Cycle and Post-HDAC inhibitor Treatment Dynamics
inferred← citeshttps://doi.org/10.1038/s41467-021-26153-7openalex-snapshot
Pig genome functional annotation enhances the biological interpretation of complex traits and human disease
inferred← citeshttps://doi.org/10.1038/s41467-021-26567-3openalex-snapshot
HNF4A defines tissue-specific circadian rhythms by beaconing BMAL1::CLOCK chromatin binding and shaping the rhythmic chromatin landscape
inferred← citeshttps://doi.org/10.1038/s41556-022-00996-8openalex-snapshot
The HASTER lncRNA promoter is a cis-acting transcriptional stabilizer of HNF1A
inferred← citeshttps://doi.org/10.1038/s41569-021-00597-2openalex-snapshot
Genomic enhancers in cardiac development and disease
inferred← citeshttps://doi.org/10.1038/s41586-022-05688-9openalex-snapshot
Dissecting cell identity via network inference and in silico gene perturbation
inferred← citeshttps://doi.org/10.1038/s41588-024-01709-7openalex-snapshot
A spatiotemporal atlas of mouse liver homeostasis and regeneration
inferred← citeshttps://doi.org/10.1038/s41598-022-09869-4openalex-snapshot
Optimized assay for transposase-accessible chromatin by sequencing (ATAC-seq) library preparation from adult Drosophila melanogaster neurons
inferred← citeshttps://doi.org/10.1038/s44161-025-00618-0openalex-snapshot
Mapping the transcriptional and epigenetic landscape of organotypic endothelial diversity in the developing and adult mouse
inferred← citeshttps://doi.org/10.1093/bib/bbac541openalex-snapshot
Learning single-cell chromatin accessibility profiles using meta-analytic marker genes
inferred← citeshttps://doi.org/10.1101/2021.06.28.450167openalex-snapshot
Analysis at single-cell resolution identifies a stable mammalian tRNA-mRNA interface and increased translation efficiency in neurons
inferred← citeshttps://doi.org/10.1101/2021.09.06.459068openalex-snapshot
Chromatin accessibility combined with enhancer clusters activation mediates heterogeneous response to dexamethasone in myeloma cells
inferred← citeshttps://doi.org/10.1111/gtc.13082openalex-snapshot
Visualization of the landscape of the read alignment shape of ATAC ‐seq data using Hellinger distance metric
inferred← citeshttps://doi.org/10.1186/s12864-022-08698-zopenalex-snapshot
Genome-scale metabolic network model of Eriocheir sinensis icrab4665 and nutritional requirement analysis
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